Jatropha Genome Database
- JcCA0044231.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0044231.30 - phase: 0 /TE/partial
(1012 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse transc... 208 1e-53
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 177 2e-44
IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse transc... 168 1e-41
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc... 159 5e-39
IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse transc... 157 3e-38
IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse transc... 147 2e-35
IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse transc... 147 2e-35
IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse transc... 143 5e-34
IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse transc... 140 2e-33
IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse transcri... 130 4e-30
IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse transc... 127 2e-29
IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse transcri... 123 4e-28
IMGA|Medtr6g061920.1 RNA-directed DNA polymerase (Reverse transc... 101 2e-21
IMGA|Medtr4g159480.1 Endonuclease/exonuclease/phosphatase chr04_... 94 2e-19
IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse transc... 84 5e-16
IMGA|AC233676_33.1 RNA-directed DNA polymerase (reverse transcri... 83 8e-16
IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse transc... 79 1e-14
IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse transc... 79 1e-14
IMGA|Medtr6g070340.1 Endonuclease/exonuclease/phosphatase, putat... 69 8e-12
IMGA|Medtr3g162890.1 RNA-directed DNA polymerase (reverse transc... 69 1e-11
IMGA|Medtr3g039900.1 RNA-directed DNA polymerase (Reverse transc... 67 5e-11
IMGA|CU179634_33.1 RNA-directed DNA polymerase (Reverse transcri... 66 7e-11
IMGA|Medtr8g087490.1 RNA-directed DNA polymerase, putative chr08... 62 2e-09
IMGA|Medtr5g009520.1 RNA-directed DNA polymerase (reverse transc... 60 4e-09
IMGA|Medtr5g030050.1 RNA-directed DNA polymerase (Reverse transc... 60 5e-09
IMGA|Medtr4g013050.1 hypothetical protein chr04_pseudomolecule_I... 60 6e-09
IMGA|Medtr4g012970.1 hypothetical protein chr04_pseudomolecule_I... 60 6e-09
IMGA|Medtr1g089700.1 reverse transcriptase, putative; 16838-2026... 60 8e-09
IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse transc... 59 1e-08
IMGA|Medtr3g024790.1 RNA-directed DNA polymerase (Reverse transc... 59 2e-08
IMGA|AC233668_7.1 RNA-directed DNA polymerase (Reverse transcrip... 59 2e-08
IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse transc... 56 1e-07
IMGA|AC233668_29.1 RNA-directed DNA polymerase (reverse transcri... 55 1e-07
IMGA|Medtr8g109700.1 RNA-directed DNA polymerase (Reverse transc... 55 2e-07
IMGA|Medtr6g043420.1 RNA-directed DNA polymerase, related chr06_... 54 4e-07
IMGA|Medtr3g024820.1 RNA-directed DNA polymerase (reverse transc... 54 5e-07
IMGA|Medtr5g013050.1 RNA-directed DNA polymerase (reverse transc... 53 6e-07
IMGA|Medtr3g138260.1 RNA-directed DNA polymerase (reverse transc... 52 1e-06
IMGA|Medtr1g009630.1 RNA-directed DNA polymerase, related chr01_... 52 2e-06
IMGA|Medtr3g076330.1 RNA-directed DNA polymerase (reverse transc... 52 2e-06
IMGA|Medtr2g042220.1 RNA-directed DNA polymerase (reverse transc... 50 6e-06
>IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
11971058-11973594 E EGN_Mt090430 20090702
Length = 628
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 182/338 (53%), Gaps = 21/338 (6%)
Query: 447 EAHLLRKLRLEEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSL 506
+ + R + EE+ W Q+S KWL DGD NT+++H R+ +I ++N DG W+ +
Sbjct: 129 QKEMSRIFQQEELMWFQRSRAKWLVDGDRNTRYYHLKTVQRRRRNKIIMLRNVDGHWVEI 188
Query: 507 QEDIGEEAVKHFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQL 566
E++ + K++ LF V + Q P L E L D EI++AV+ +
Sbjct: 189 VEEVKDMVNKYYYELFTTNVDTSEWFQTSLAFPRL-DLETLEILRHPLVDEEIRSAVFSM 247
Query: 567 DPSSAPGPDGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSV 626
P APGPDGF FY+ WSII + C +K+ + + I LIPKV++P
Sbjct: 248 TPWKAPGPDGFPAGFYQKSWSIIGKNTCDFIKKLWCSPEQLAEINSTNICLIPKVQDPQF 307
Query: 627 FDQFRPICLTN--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEI 684
+QFRPI L N +K+ ++++ NR+ + ++SP Q F+ GRSIH I++A EMIH
Sbjct: 308 VNQFRPISLCNTVYKILSKVIVNRLKNCVAEIVSPFQTGFIPGRSIHENIVVAQEMIHCG 367
Query: 685 GRKARENNIAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGV 744
R + +D +SW+F+ L G ++ +I+ +++ R +V +NG
Sbjct: 368 SR--------------QTYDNLSWNFIHMTLLEVGLPMEMINVIMHSVTTVRTNVRWNGN 413
Query: 745 NYGFFAPSRGVKQGDPLSPYLFILVSECFSRGLKHLVS 782
FF P +G++QGDP+SPYLF++ C + L HL+S
Sbjct: 414 RADFFTPKKGLRQGDPISPYLFVI---CMDK-LSHLIS 447
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 167/327 (51%), Gaps = 39/327 (11%)
Query: 457 EEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVK 516
E+ +WKQ++ + W++DGD N KFFH ++ +I+
Sbjct: 187 EDTFWKQRAKIFWMKDGDMNAKFFHAAATSRKQKNKITK--------------------- 225
Query: 517 HFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDG 576
LF E +C + E N L A TD E ++A++Q+ APGPDG
Sbjct: 226 ----LFNDEDAVAEC----------LNEEDNQFLIAPFTDEEFRDAIFQMQSDKAPGPDG 271
Query: 577 FDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPICLT 636
+ FY+ W++ +V + + + +P + I+LIPK ++P RPI L
Sbjct: 272 LNPTFYKRFWTLCGEEVVAACRRWLHEGNLPTALGDTNIVLIPKCDHPRTMRDLRPISLC 331
Query: 637 N--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEIGRK--ARENN 692
N +K+ + LANR+ +LD IS +Q+ F+ GR+I IL+A E+IH + K +
Sbjct: 332 NVVYKILAKTLANRLQRVLDKCISVEQSGFVAGRTITDNILIALEIIHYLKCKTWGIKGE 391
Query: 693 IAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGFFAPS 752
A+K+DI+K +DRV W++L +++ + GF+ + + +++ V N G P
Sbjct: 392 AALKIDISKTYDRVDWNYLFSIMEKMGFNPIWIKWMRMSVTMVSYHVLVNDDRVGPIYPG 451
Query: 753 RGVKQGDPLSPYLFILVSECFSRGLKH 779
RG++QGDPLSPYLFIL +E S +K
Sbjct: 452 RGLRQGDPLSPYLFILCAEGMSTLIKQ 478
>IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
13465118-13466957 H EGN_Mt090430 20090702
Length = 509
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 158/343 (46%), Gaps = 68/343 (19%)
Query: 460 YWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVKHFS 519
+WK+KS +GD NT + H K+ +S +K+ D + +E+ E +
Sbjct: 74 FWKEKSKTVRFLEGDRNTAYLHRQAKIREAQSYLSMLKHGDEILNRYEENELPERI---- 129
Query: 520 SLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDGFDG 579
+P L+T E N L + + EIK A++ L+ S+PGPDGF G
Sbjct: 130 ------------------IPHLVTLEDNNMLSVVPSAEEIKRAIFGLNGDSSPGPDGFSG 171
Query: 580 RFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPICLTN-- 637
FY W II DV + + FFL I + + +ILIPKV D FRPI L N
Sbjct: 172 HFYHCFWHIIGGDVVKSTQHFFLNNYIMPNLNSNLLILIPKVIGADTLDNFRPIALANFQ 231
Query: 638 FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEIGRKARENNIAIKL 697
FK+ T+IL +R+ + +IS Q F+ GRSI I++A+E+
Sbjct: 232 FKIITKILGDRLGIIAAKIISTHQRGFIPGRSIQECIMVASEVF---------------- 275
Query: 698 DIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQ 757
W II L + RLS+ NG + GFF +RGV+Q
Sbjct: 276 --------CDW-------------------IITILHSARLSININGKSVGFFKCTRGVRQ 308
Query: 758 GDPLSPYLFILVSECFSRGLKHLVSFGKIQPYKLARN-YSPCY 799
GDPLSP LF + E SRG++ LV G++ + R+ Y P +
Sbjct: 309 GDPLSPILFCIAEEVLSRGIEELVVRGRMTQIRATRSLYIPSH 351
>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
15868030-15871357 E EGN_Mt090430 20090702
Length = 845
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 67/344 (19%)
Query: 457 EEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVK 516
E+ YW+Q++ W DGD NTKFFH +K RI+ + N +GV ++ ++ + + A +
Sbjct: 65 EDKYWRQRAKTHWYRDGDLNTKFFHASATSRKKVNRINFLDNDEGVRIADEQGMSQVAKE 124
Query: 517 HFSSLFQGEVMQQDCSQ--IIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGP 574
+F +LF ++ + ++ ++ + +++ + N+ L A E K+A++ + P PGP
Sbjct: 125 YFETLF----LESNSTRAPVVNIIEKVVSGDDNIMLTAPFQAEEFKDAMFSMHPDKCPGP 180
Query: 575 DGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPIC 634
DGF NP F Q PI
Sbjct: 181 DGF---------------------------------------------NPGFFQQLWPIA 195
Query: 635 LTN--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIH--EIGRKARE 690
L N +K+ ++LANR+ +L IS Q++F+ RSI ++A E++H ++G++ R+
Sbjct: 196 LCNVLYKLVAKVLANRLKKILHKCISESQSAFVPERSILDNAMIAIEVVHHMKVGKRVRD 255
Query: 691 NNIAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGFFA 750
N+A+KLDI+KA+DR+ W +L+ V+ + GF V I+ + SV N
Sbjct: 256 KNVALKLDISKAYDRIDWLYLKEVMLKMGFDSKWVQQIMMCVETVDYSVIVNN------- 308
Query: 751 PSRGVKQGDPLSPYLFILVSECFSRGLKHLVSFGKIQPYKLARN 794
+ GDPLSPYLFIL E S ++ G + + N
Sbjct: 309 -----ELGDPLSPYLFILCDEGLSALIRKAERSGDLHGVSICTN 347
>IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13555953-13554878 H EGN_Mt090430 20090702
Length = 318
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 172/333 (51%), Gaps = 21/333 (6%)
Query: 463 QKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVKHFSSLF 522
QKS + WL+ GD+NTKFFH+ + R+ I S+ +++G + E I HFSS F
Sbjct: 4 QKSRLLWLKKGDANTKFFHSIMSSRRRANSIFSL-SANGTIVEGVEGIRGLVFNHFSSHF 62
Query: 523 QGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDGFDGRFY 582
+ ++ + + + +++ L + E+K AVW D +PGPDG + F
Sbjct: 63 KSVAAERPSIENLNF--NILNLGQCGELTKPFSIDEVKQAVWDCDSFKSPGPDGVNMGFV 120
Query: 583 RDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPICLTN--FKV 640
+D W ++ D+ + +F + + + I LIPK+E P + FRPI + +K+
Sbjct: 121 KDFWPELRDDIMHFLSDFHRNGKLSKGINNTFIALIPKIECPQRLNDFRPISMVGSLYKI 180
Query: 641 CTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEIGRKARENNIAIKLDIA 700
+++L+NR+ ++ L IL+ANE++ + ++ +++ + K+D
Sbjct: 181 LSKVLSNRLRRVIQIL---------------DGILIANEIVKD-AKRLKKDLLLFKVDFE 224
Query: 701 KAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQGDP 760
KAFD ++WS+LEAV+ + + I+ +S SV NG F RG++QGDP
Sbjct: 225 KAFDSINWSYLEAVMKKMNYPTLWRKWIMECVSTASTSVLVNGSPTDEFKLERGLRQGDP 284
Query: 761 LSPYLFILVSECFSRGLKHLVSFGKIQPYKLAR 793
SP+LF++ +E + +K L+ G YKL +
Sbjct: 285 FSPFLFLIAAEGLNVMMKALIEAGLFSGYKLGQ 317
>IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
34193929-34195112 H EGN_Mt090430 20090702
Length = 373
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 146/281 (51%), Gaps = 7/281 (2%)
Query: 517 HFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDG 576
+F LF+ + +D +I + +I+ E N L E K A++ + PGPDG
Sbjct: 8 YFDELFRAKQSTRD--PVINVINKVISEEDNHQLTTPFLIEEFKEAMFSMQAEKCPGPDG 65
Query: 577 FDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPICLT 636
F+ FY+ W + D+ + +P S + I LIPK +RPI L
Sbjct: 66 FNPGFYQHFWQLCSPDIFRECCSWLESGQLPASLNSTNIALIPKGSEQRTMKDWRPIALC 125
Query: 637 N--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIH--EIGRKARENN 692
+ +KV +++LANR+ +L I Q++F+ GR I ++A E++H + K ++ N
Sbjct: 126 DVFYKVVSKVLANRLKKILHKCILDNQSAFVPGRPILDNAMVAIEVVHYMKSKTKGKKGN 185
Query: 693 IAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYG-FFAP 751
+A+KLDI+KA+DR+ W +L+ V+ + GF V I+ + SV N G P
Sbjct: 186 VALKLDISKAYDRIDWLYLKEVMIKMGFCHRWVNWIMMCIETVDYSVLVNQKLVGPPIIP 245
Query: 752 SRGVKQGDPLSPYLFILVSECFSRGLKHLVSFGKIQPYKLA 792
RG++QGDPLSPYLFIL E S ++ + G++ K++
Sbjct: 246 GRGLQQGDPLSPYLFILCVEGLSALIRQAEARGELHGAKVS 286
>IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
29296065-29298854 H EGN_Mt090430 20090702
Length = 693
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 133/245 (54%), Gaps = 5/245 (2%)
Query: 563 VWQLDPSSAPGPDGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVE 622
++ + P GPDGF+ F++ WS+ D+ S + P S + I LIPK
Sbjct: 1 MYSMHPDKCLGPDGFNPGFFQKFWSVCNSDIFSECCSWLNNNQFPPSLNSTNIALIPKGN 60
Query: 623 NPSVFDQFRPICLTN--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEM 680
+RPI L N +K+ ++LANR+ +L +S Q++F+ GRSI ++A E+
Sbjct: 61 EQHNMKDWRPIALCNVLYKLVAKVLANRLKNILHKCVSDNQSAFVPGRSILDNAMIAIEV 120
Query: 681 IH--EIGRKARENNIAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLS 738
IH +I ++ R+ N+A+KLDI+KA+DR+ W +L+ V+ + G++ + I+ + + S
Sbjct: 121 IHHMKISKRLRDKNVALKLDISKAYDRIDWLYLKEVVIKIGYANRWIRWIMMCVESVDYS 180
Query: 739 VXFNGVNYGFFAPSRGVKQGDPLSPYLFILVSECFSRGLKHLVSFGKIQPYKLARNYSPC 798
V N + G P G++QGDPLSPYLFIL +E S + G I + N SP
Sbjct: 181 VIVNNESVGPIFPGEGLRQGDPLSPYLFILCAEGLSALIHQAERRGDIHGISICTN-SPI 239
Query: 799 YSFKL 803
S L
Sbjct: 240 ISHLL 244
>IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
5513052-5515983 E EGN_Mt090430 20090702
Length = 591
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 138/277 (49%), Gaps = 39/277 (14%)
Query: 545 EHNLALGAISTDSEIKNAVWQLDPSSAPGPDGFDGRFYRDCWSIIQWDVCSTVKEFFLGL 604
+ N L + T E++ A++Q+ P +P PDGF+ FY+ W + D+ V +
Sbjct: 2 DDNTMLTSPVTKEELRRALFQMHPDKSPSPDGFNPAFYQRFWHVCGDDIFQAVVSWLDRG 61
Query: 605 PIPQSFSCAQIILIPKVENPSVFDQFRPICLTN--FKVCTRILANRIAPLLDFLISPKQA 662
P + + I LI K E+P RPI L N +K+ +++LANR+ LD +S +Q+
Sbjct: 62 YFPTNLTKTNICLILKCEDPDNMKDLRPISLCNVLYKMVSKLLANRLKRCLDKCVSEEQS 121
Query: 663 SFMKGRSIHSQILLANEMIHEIGRKAR--ENNIAIKLDIAKAFDRVSWSFLEAVLFRFGF 720
+F++GRSI L+ E+IH + RK + +A+K+DI KA+D+V W FL VL R GF
Sbjct: 122 AFVEGRSILDNALITTEIIHSMKRKTKGWRGELALKIDINKAYDKVGWGFLRGVLMRMGF 181
Query: 721 SQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVSECFSRGLKHL 780
++ + ++ GDPLSPYLFILV E S +
Sbjct: 182 NEKWIQWMMMC--------------------------GDPLSPYLFILVDEGLSTLIHKA 215
Query: 781 VSFGKIQPYKLARNYSPCYS--------FKLCRXSID 809
V+ G I ++ R +P S F CR ++D
Sbjct: 216 VNRGDIHGIQVCRG-APVVSHLLFADDYFLFCRANVD 251
>IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
1329629-1330366 H EGN_Mt090430 20090702
Length = 245
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 7/207 (3%)
Query: 570 SAPGPDGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQ 629
+APGPDG FY W ++ + V P F+ I LIPK NPS
Sbjct: 5 AAPGPDGLPALFYHHYWDVLGTEAALDVLNNNAD---PSPFNSTNICLIPKKNNPSHPSD 61
Query: 630 FRPICLTNFKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEIGR-KA 688
F PI L K+ T+ +ANR+ P+L +IS Q++F+ GR I L++ E+ H + +
Sbjct: 62 FWPIAL---KIITKTIANRLKPILGEVISGNQSAFLPGRLISDNTLMSYEIFHYLSNTSS 118
Query: 689 RENNIAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGF 748
++ + +K +AKA+D+V W+FLEA + + GF V I+ ++ S+ +G N
Sbjct: 119 KKGYMGMKTVMAKAYDKVEWTFLEATMLKMGFPHQFVSTIMRCVTTVTFSILIDGSNSKE 178
Query: 749 FAPSRGVKQGDPLSPYLFILVSECFSR 775
F P RG++QGDPLSPYLFI+ + FS
Sbjct: 179 FQPQRGLRQGDPLSPYLFIICVDVFSE 205
>IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC235669.1 69436-68759 H EGN_Mt090430
20090702
Length = 225
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 111/208 (53%), Gaps = 3/208 (1%)
Query: 549 ALGAISTDSEIKNAVWQLDPSSAPGPDGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQ 608
+L + E+ + V+ + APGPDGF F++ W I D+ V F I
Sbjct: 11 SLTTLILKDEVGSTVFSMKSYKAPGPDGFQPIFFKHFWERIGDDIRRLVHTTFNMGSINA 70
Query: 609 SFSCAQIILIPKVENPSVFDQFRPICLTN--FKVCTRILANRIAPLLDFLISPKQASFMK 666
S + I LIPK NP FRPI N FK+ T+ L +R+ PLL +ISP Q+SF+
Sbjct: 71 SIAKTLIFLIPKKSNPQRLKNFRPISFCNVIFKLITKFLVSRLRPLLVDMISPLQSSFIP 130
Query: 667 GRSIHSQILLANEMIHEIGRK-ARENNIAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIV 725
GR I +LA E++H I A++ I K+D KA+DR +W FLE L FGF +
Sbjct: 131 GRGITDNAILAQEVVHFIHHSHAKKGCIVSKIDHEKAYDRHNWDFLELTLHGFGFPSTTI 190
Query: 726 XLIIANLSATRLSVXFNGVNYGFFAPSR 753
L ++ + ++ LSV +NGV F PSR
Sbjct: 191 SLNMSCVRSSNLSVLWNGVKTDHFTPSR 218
>IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
40247310-40247920 H EGN_Mt090430 20090702
Length = 187
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 4/172 (2%)
Query: 627 FDQFRPICLTN--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEI 684
RPI L N +K+ ++L NR+ LD + +Q++F K RSI L+A E+IH +
Sbjct: 1 MKDLRPISLCNVLYKMVLKLLTNRLKRCLDKCVLEEQSTFFKSRSILDNALIATEIIHSM 60
Query: 685 GRKAR--ENNIAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFN 742
RK + +A+K+DI+KA+DRV W FL VL R GFS+ + ++ +S+ SV N
Sbjct: 61 KRKTKGWRGELALKIDISKAYDRVDWGFLRGVLMRMGFSEKWIQWMMMCVSSVTYSVLTN 120
Query: 743 GVNYGFFAPSRGVKQGDPLSPYLFILVSECFSRGLKHLVSFGKIQPYKLARN 794
G P RG++QGDPLSPYLFILV+E S + +V+ G I ++ R
Sbjct: 121 FDRVGPIVPGRGLRQGDPLSPYLFILVAEGLSTLIHKIVNSGDIHGVQVCRG 172
>IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse
transcriptase); Endonuclease/exonuclease/phosphatase
AC233655.2 202219-200303 H EGN_Mt090430 20090702
Length = 567
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 141/325 (43%), Gaps = 56/325 (17%)
Query: 457 EEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVK 516
EE +WKQ++ WL DGD N+KFFH ++ +I+ + D ++ QEDI +++
Sbjct: 269 EETFWKQRAKSFWLRDGDMNSKFFHAAATSRKQRNKITKLMKDDNTKVTTQEDICTLSLE 328
Query: 517 HFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDG 576
+FS+LF + +++ + I E N L D E ++ V+Q+ APG DG
Sbjct: 329 YFSNLFAPTPC--NTHPVLQAVAPCINAEDNNLLTTPFRDDEFRDVVFQMHSDKAPGSDG 386
Query: 577 FDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPICLT 636
+ FY+ ++ +V K++ +P + I+LIPK E+P RPI L
Sbjct: 387 LNPAFYKRFSALCGGEVIKACKQWLNLGYLPTALGETNIVLIPKCEHPRTMKDLRPISLC 446
Query: 637 N--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEIGRKARENNIA 694
N +K+ + LANR+ LD
Sbjct: 447 NVVYKMLAKALANRLQRALD---------------------------------------- 466
Query: 695 IKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRG 754
+ +L ++L + GF+ + + ++ + + N G P RG
Sbjct: 467 ------------KFEYLFSILEKMGFNSVWINWMHMCVTNVKYHILVNDEIVGPVIPGRG 514
Query: 755 VKQGDPLSPYLFILVSECFSRGLKH 779
++QGDPLSPYLFIL + + +K
Sbjct: 515 LRQGDPLSPYLFILCAGGMTSLIKQ 539
>IMGA|Medtr6g061920.1 RNA-directed DNA polymerase (Reverse
transcriptase); Deoxyribonuclease I
chr06_pseudomolecule_IMGAG_V3 11215607-11213885 H
EGN_Mt090430 20090702
Length = 405
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 28/262 (10%)
Query: 459 IYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVKHF 518
I W QKS + WL + D+N+KFFH + R+ + I+ DG + HF
Sbjct: 141 IQW-QKSRLNWLREDDANSKFFHGIMSARRRGNALLFIE-VDGTRFEGVTNFRGAVFNHF 198
Query: 519 SSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDGFD 578
++ + + + + + + E +L + + EIK+AVW D +PG +G
Sbjct: 199 QHHYKSIYITRPSADDMAF--KTMYVEDGGSLTGLFLEGEIKHAVWSCDSYKSPGANGIS 256
Query: 579 GRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPICLTNF 638
F +D W +++ D+ +F + + + I LIPKV
Sbjct: 257 LNFIKDFWGLLKGDMIRFFNDFHRHDRLSKGINSTFIALIPKV----------------- 299
Query: 639 KVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEIGRKARENNIAIKLD 698
L NR+ ++ +ISP Q +F+ G I +L+ANE++ + ++ +++ + K+D
Sbjct: 300 ------LVNRLQNIIGSVISPSQTTFVSGCQILDGLLIANELVDDACKR-KQDLLLFKVD 352
Query: 699 IAKAFDRVSWSFLEAVLFRFGF 720
KAFD V W +L +L R F
Sbjct: 353 FEKAFDSVDWKYLHTMLRRMNF 374
>IMGA|Medtr4g159480.1 Endonuclease/exonuclease/phosphatase
chr04_pseudomolecule_IMGAG_V3 40245955-40247247 H
EGN_Mt090430 20090702
Length = 395
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 451 LRKLRLEEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDI 510
LR ++EE +WKQ+ + WL++GD NTKFFH K +++S ++ DG+ + QED+
Sbjct: 244 LRASQMEEAFWKQRVKMHWLKEGDINTKFFHTSAIARGKVKKVSKLRTDDGITDTTQEDM 303
Query: 511 GEEAVKHFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSS 570
A +F LF + +++ + ++ + N+ L + T E++ A++Q+ P
Sbjct: 304 CNVAQSYFEQLFSANAGVHE--PVLDLMNKCVSIDDNIILTSPITKQELRQALFQMQPDK 361
Query: 571 APGPDGFDGRFYRDCWSIIQWDVCSTV 597
+PGP+GF+ FY+ W + D+ V
Sbjct: 362 SPGPNGFNQAFYQRFWYVCGDDIFQAV 388
>IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
26299553-26300277 H EGN_Mt090430 20090702
Length = 207
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 20/134 (14%)
Query: 660 KQASFMKGRSIHSQILLANEMIHEIGRKAR--ENNIAIKLDIAKAFDRVSWSFLEAVLFR 717
+Q++F++ SI L+A E+IH + RK +A+K+DI+KA+DRV +L VL R
Sbjct: 20 EQSAFVEDHSILDNTLIATEIIHSVKRKTNGWRGELALKIDISKAYDRVDGGYLRGVLMR 79
Query: 718 FGFSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVSECFSRGL 777
GF ++ N G P RG++Q DPLSPYLFILV+E S +
Sbjct: 80 MGF-------MLMNFD-----------RVGPIVPGRGLRQADPLSPYLFILVAEGLSTLI 121
Query: 778 KHLVSFGKIQPYKL 791
V+ G I ++
Sbjct: 122 HKAVNRGGIHGVQV 135
>IMGA|AC233676_33.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233676.2 127681-128151 H
EGN_Mt090430 20090702
Length = 156
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Query: 559 IKNAVWQLDPSSAPGPDGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILI 618
+ VW D P PDG + F +D W +Q D + EF + + + I LI
Sbjct: 19 VMQVVWDCDRYKIPRPDGINLSFIKDFWPKLQDDFMRFISEFHRNGKLSRGINNTFIALI 78
Query: 619 PKVENPSVFDQFRPICLTN--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILL 676
PKVE+ + FRPI + +KV ++++ NR+ + +IS Q++F+ GR I +IL+
Sbjct: 79 PKVESSQRLNDFRPISMVESLYKVISKVITNRLCQDMPGIISEMQSAFIHGRQILDEILI 138
Query: 677 ANEMIHEIGRKARE 690
ANE++ E R ++
Sbjct: 139 ANELVEEAKRLKKD 152
>IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13557404-13554904 H EGN_Mt090430 20090702
Length = 447
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 662 ASFMKGRSIHSQILLANEMIH--EIGRKARENNIAIKLDIAKAFDRVSWSFLEAVLFRFG 719
+ F+ GR I ++A E+I+ +I ++ R+ N+ +KLDI+KA+DR+ W +L+ ++ + G
Sbjct: 70 SDFIPGRLILDNAMIAIEVIYHMKISKRMRDKNVTLKLDISKAYDRIDWLYLKQIMVKMG 129
Query: 720 FSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVS--ECFSRGL 777
F + I+ + V N + G P RG +QGDPLS YLFIL + E + +
Sbjct: 130 FVTHWIRWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQGDPLSLYLFILCAKDEREANVM 189
Query: 778 KHLVS 782
KH++
Sbjct: 190 KHILE 194
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 457 EEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVK 516
E+ YW+Q++ + W DGD NTKFFH + +K I S++N V ++ + + + A
Sbjct: 8 EDKYWRQRAKIHWYRDGDLNTKFFHVFATSHKKVNHIISLENDARVHVTNEHGLCQVAKD 67
Query: 517 HFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSA 571
+ S G ++ + IE + + IS KN +LD S A
Sbjct: 68 NPSDFIPGRLILDNAMIAIEVIYHM----------KISKRMRDKNVTLKLDISKA 112
>IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13373662-13371162 H EGN_Mt090430 20090702
Length = 447
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 662 ASFMKGRSIHSQILLANEMIH--EIGRKARENNIAIKLDIAKAFDRVSWSFLEAVLFRFG 719
+ F+ GR I ++A E+I+ +I ++ R+ N+ +KLDI+KA+DR+ W +L+ ++ + G
Sbjct: 70 SDFIPGRLILDNAMIAIEVIYHMKISKRMRDKNVTLKLDISKAYDRIDWLYLKQIMVKMG 129
Query: 720 FSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVS--ECFSRGL 777
F + I+ + V N + G P RG +QGDPLS YLFIL + E + +
Sbjct: 130 FVTHWIRWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQGDPLSLYLFILCAKDEREANVM 189
Query: 778 KHLVS 782
KH++
Sbjct: 190 KHILE 194
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 457 EEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVK 516
E+ YW+Q++ + W DGD NTKFFH + +K I S++N V ++ + + + A
Sbjct: 8 EDKYWRQRAKIHWYRDGDLNTKFFHVFATSHKKVNHIISLENDARVHVTNEHGLCQVAKD 67
Query: 517 HFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSA 571
+ S G ++ + IE + + IS KN +LD S A
Sbjct: 68 NPSDFIPGRLILDNAMIAIEVIYHM----------KISKRMRDKNVTLKLDISKA 112
>IMGA|Medtr6g070340.1 Endonuclease/exonuclease/phosphatase, putative
chr06_pseudomolecule_IMGAG_V3 13241205-13239102 H
EGN_Mt090430 20090702
Length = 201
Score = 69.3 bits (168), Expect = 8e-12, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 3/169 (1%)
Query: 469 WLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVKHFSSLFQGEVMQ 528
WL+DGD+NTKFFH+ + R+ I + + +G + E+I HF + F+ ++
Sbjct: 3 WLKDGDANTKFFHDILAARRRGNSIVKL-DDNGSEVQGVENIRGVVFNHFKNHFRSVMVD 61
Query: 529 QDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDGFDGRFYRDCWSI 588
+ ++ + + ++I L + E+K VW D +P PDG + F + W
Sbjct: 62 RLGAENLNF--NMIGMFETSELVKPFSLEEVKQVVWDCDTFKSPWPDGINLGFLTEFWQE 119
Query: 589 IQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPICLTN 637
++ D+ EF + + + I LIPKVE+P F I L N
Sbjct: 120 VKDDLMRFFGEFHRKGRLSRGLNNTFIGLIPKVESPQKLSDFWSISLKN 168
>IMGA|Medtr3g162890.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
42636230-42638565 E EGN_Mt090430 20090702
Length = 167
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 454 LRLEEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEE 513
L E++ W QKS W++ + NTKFFH + R+ +++ + N DG+W ++ + E
Sbjct: 32 LAQEKMLWYQKSRENWIKFENKNTKFFHVQTVIRRRRNKVAGL-NIDGIWCINEDSLRRE 90
Query: 514 AVKHFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPG 573
A+ +F SLFQ S + P + +N +L + E+K +++ ++ APG
Sbjct: 91 ALSYFRSLFQEGGPTSPSSLHFSHFPHISIDLYN-SLCLNPSLEEVKFSLFSMNSYKAPG 149
Query: 574 PDGFDGRFYRDCWSII 589
DGF F++ W+I+
Sbjct: 150 QDGFQPIFFKTFWNIV 165
>IMGA|Medtr3g039900.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
10722310-10721876 H EGN_Mt090430 20090702
Length = 126
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 557 SEIKNAVWQLDPSSAPGPDGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQII 616
E+K VW D +PG G + F +D W Q + + EF + + + I
Sbjct: 4 EEVKQVVWNYDSYKSPGLGGINFGFIKDFWPDFQEEFTCFITEFHGNGKLSKGINITFIT 63
Query: 617 LIPKVENPSVFDQFRPICLTN--FKVCTRILANRIAPLLDFLISPKQASFMKGRSI 670
LI K++N + FRPI L + +KV +++LANR+ + + +IS Q +F+ R I
Sbjct: 64 LIRKIDNSQRVNDFRPISLVSNLYKVLSKVLANRLRCVTESVISETQLAFIHHRQI 119
>IMGA|CU179634_33.1 RNA-directed DNA polymerase (Reverse
transcriptase) CU179634.6 121572-121327 H EGN_Mt090430
20090702
Length = 81
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 696 KLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGV 755
KLDI KA+D ++W+FL ++ + GF+ + I +S + SV N GFF+ RG+
Sbjct: 3 KLDIQKAYDHLNWNFLLKLMEKMGFAFRWIKWIEHCISTVKFSVLINRETNGFFSSQRGL 62
Query: 756 KQGDPLSPYLFILVSE 771
+QGDPLSP+LFI+ E
Sbjct: 63 RQGDPLSPFLFIMGME 78
>IMGA|Medtr8g087490.1 RNA-directed DNA polymerase, putative
chr08_pseudomolecule_IMGAG_V3 18192188-18193266 H
EGN_Mt090430 20090702
Length = 144
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 588 IIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPKVENPSVFDQFRPICLTN--FKVCTRIL 645
+I+ +V ++FF +P+SFS + LIPKV++ +F PI L +K+ ++L
Sbjct: 62 LIKEEVNVLFQQFFFNASLPRSFSSYFMALIPKVDSSQSLWEFHPISLIGSLYKLIVKVL 121
Query: 646 ANRIAPLLDFLISPKQASFMKGR 668
A+R ++D +ISP Q++F+KGR
Sbjct: 122 ASRFTSVMDKIISPNQSAFLKGR 144
>IMGA|Medtr5g009520.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
2111344-2110511 H EGN_Mt090430 20090702
Length = 277
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 5/173 (2%)
Query: 448 AHLLRKLRLEEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQ 507
+HLL K E+ +W+Q++ W +GD NT+FFH RK ++S+ N+ +
Sbjct: 101 SHLLAK---EDTFWRQRAKTHWFREGDLNTRFFHAAATSRRKINCLTSLVNTPSTRIKDS 157
Query: 508 EDIGEEAVKHFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLD 567
+ +F+ +F + +++ + I+ + N L + T E ++A++ +
Sbjct: 158 LVLCSVPRDYFAEIFHKPI--NILYPVLDAINPSISEDANTNLTTLFTIDEFRDAMFSMK 215
Query: 568 PSSAPGPDGFDGRFYRDCWSIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPK 620
GP F+ FY+ W +I ++ + + + I LIPK
Sbjct: 216 LDKYLGPGRFNPDFYQYFWPLIGQEIFQESYSWLTTGTFLSTLNLTNIALIPK 268
>IMGA|Medtr5g030050.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
12585358-12584747 H EGN_Mt090430 20090702
Length = 203
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 675 LLANEMIH--EIGRKARENNIAIKLDIAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANL 732
++ E++H +I +++R+ N+A+KL I K + + +L+ V+ + F+ V I+ +
Sbjct: 1 MIVIEVVHHMKISKRSRDKNVALKLYIGKGYVCIDRLYLKEVMQKLEFANRWVRWIMMCV 60
Query: 733 SATRLSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVSE 771
SV N + G RG++QGDPLSPYLFIL +E
Sbjct: 61 ETDDYSVIVNNESVGPIFLGRGLRQGDPLSPYLFILCAE 99
>IMGA|Medtr4g013050.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 2458849-2459642 H
EGN_Mt090430 20090702
Length = 155
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 21/113 (18%)
Query: 664 FMKGRSIHSQILLANEMIHEIGRKAR-ENNIA-IKLDIAKAFDRVSWSFLEAVLFRFGFS 721
F+ RSI ++ E++H + R NNIA +KLDI KA++++ W +L+ V+ + G S
Sbjct: 2 FISKRSILDNAMIPFEVVHHMKIDTRMSNNIATLKLDINKAYNQIDWVYLKKVMLKMGLS 61
Query: 722 QPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVSECFS 774
Q NL G RG+ Q DPL PYL+IL +E FS
Sbjct: 62 QS------CNL-------------VGPIILGRGLCQSDPLFPYLYILCAEGFS 95
>IMGA|Medtr4g012970.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 2420499-2421292 H
EGN_Mt090430 20090702
Length = 155
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 21/113 (18%)
Query: 664 FMKGRSIHSQILLANEMIHEIGRKAR-ENNIA-IKLDIAKAFDRVSWSFLEAVLFRFGFS 721
F+ RSI ++ E++H + R NNIA +KLDI KA++++ W +L+ V+ + G S
Sbjct: 2 FISKRSILDNAMIPFEVVHHMKIDTRMSNNIATLKLDINKAYNQIDWVYLKKVMLKMGLS 61
Query: 722 QPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVSECFS 774
Q NL G RG+ Q DPL PYL+IL +E FS
Sbjct: 62 QS------CNL-------------VGPIILGRGLCQSDPLFPYLYILCAEGFS 95
>IMGA|Medtr1g089700.1 reverse transcriptase, putative; 16838-20266,
related chr01_pseudomolecule_IMGAG_V3 17930727-17931209
H EGN_Mt090430 20090702
Length = 160
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 445 EKEAHLLRKLRLEEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWL 504
E E +L L EE++W Q++ +WL+ GD+NTKFFH +K I SI + +G
Sbjct: 18 EIETNLNDVLLQEEVWWAQRAKTQWLKYGDNNTKFFHFKASQRKKKNYIYSITDKNGREW 77
Query: 505 SLQEDIGEEAVKHFSSLFQGEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVW 564
+ I + +F+ +F + ++ + + + T+ L A T E++ +
Sbjct: 78 NDDIHIHDIFTNYFADIFSTS-HPTEVHNNLDVISNRVPTDRQAELSADFTIEEVEATMK 136
Query: 565 QLDPSSAPGPDG 576
+ +SAPG DG
Sbjct: 137 SMKATSAPGLDG 148
>IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
13863857-13863375 E EGN_Mt090430 20090702
Length = 116
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 699 IAKAFDRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVKQG 758
++KA+DR++W +L V+ R GF I+ + + + V N + G P G+++G
Sbjct: 1 MSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSGLRKG 60
Query: 759 DPLSPYLFILVSECFSRGLKHLVS 782
DPLSPYLFIL ++ GL L+
Sbjct: 61 DPLSPYLFILCAQ----GLTSLID 80
>IMGA|Medtr3g024790.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
6317912-6319402 H EGN_Mt090430 20090702
Length = 456
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 737 LSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVSECFSRGLKHLVSFGKIQPYKLARN 794
+S+ NG G+F +RGV+QGDPLSP LF E SRG+ LV GK++ K +R+
Sbjct: 1 MSISINGSQRGYFKCARGVRQGDPLSPLLFCSAEEVLSRGILKLVDDGKVELIKASRD 58
>IMGA|AC233668_7.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233668.2 19636-19893 H EGN_Mt090430
20090702
Length = 85
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 628 DQFRPICLTN--FKVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIH--E 683
+ +R I L N +K+ ++LANR+ +L IS Q++F RSI +++ E IH +
Sbjct: 2 NDWRLIALWNVLYKLVAKVLANRLKKILHKCISEYQSAFASERSILDNAMISIEAIHHMK 61
Query: 684 IGRKARENNIAIKLDIAKAFDRV 706
+ +K R+ N+A+KLDI+K DR+
Sbjct: 62 VSKKVRDKNVALKLDISKVCDRI 84
>IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr01_pseudomolecule_IMGAG_V3 1684225-1680716 E
EGN_Mt090430 20090702
Length = 659
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 732 LSATRLSVXFNGVNYGFFAPSRGVKQGDPLSPYLFILVSECFSRGLKHLVSFGKIQPYKL 791
++++ LS+ +NG F P RG++QGDPLSPYLF+L E S +++ V+ +P K+
Sbjct: 4 ITSSSLSLKWNGEKLDSFKPKRGLRQGDPLSPYLFVLCMEKLSLMIQNQVTNNTWRPIKI 63
Query: 792 ARNYSPCYSFKL 803
+R + P +S L
Sbjct: 64 SR-HGPSFSHLL 74
>IMGA|AC233668_29.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233668.2 112870-111301 H
EGN_Mt090430 20090702
Length = 281
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 27/146 (18%)
Query: 583 RDCWSIIQWDVC-------------STVKEFFLGLP----------IPQSFSCAQIILIP 619
R + ++Q DVC T +FF L P+ I+LIP
Sbjct: 132 RTTYLLVQEDVCWRQRAKVNLLKDGDTNSKFFHALTRKLWNLRTSEFPEKLVETNIVLIP 191
Query: 620 KVENPSVFDQFRPICLTNF--KVCTRILANRIAPLLDFLISPKQASFMKGRSIHSQILLA 677
K +NP PI L F K+ +++L NR+ LL IS + +F++ SI +L+A
Sbjct: 192 KKDNPETTWDLHPISLGKFLYKIISKVLGNRLERLLPKCISQEHLTFVENISILDNVLVA 251
Query: 678 NEMIHEI--GRKARENNIAIKLDIAK 701
++++H + K ++ A K+D +K
Sbjct: 252 SKILHHMKCKSKGKKGEAASKIDTSK 277
>IMGA|Medtr8g109700.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
24673361-24673122 H EGN_Mt090430 20090702
Length = 79
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 653 LDFLISPKQASFMKGRSIHSQILLANEMIHEIGRKARENNIAIKLDIAKAFDRVSWSFLE 712
+D LIS Q++F+KGR + ++ N++I ++ RK ++ + K+D KA+D VSWSFL+
Sbjct: 1 MDKLISSNQSAFIKGRQLVDGVVTVNKII-DVARKTKKECLIFKVDFEKAYDSVSWSFLD 59
Query: 713 AVLFRFGFS 721
++ G S
Sbjct: 60 YMMRILGVS 68
>IMGA|Medtr6g043420.1 RNA-directed DNA polymerase, related
chr06_pseudomolecule_IMGAG_V3 9021386-9021694 H
EGN_Mt090430 20090702
Length = 102
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 445 EKEAH--LLRKLRLEEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGV 502
EKEAH + +E +WK+K+H+ W +GD NTK+FH K+ + I++++N + V
Sbjct: 30 EKEAHKKFEEAMDRQETFWKEKAHLNWHMEGDRNTKYFHRISKIKISSKTITTLQNGEQV 89
Query: 503 WLSLQEDIGEEAV 515
L+ Q I E +
Sbjct: 90 -LTEQAHISEHII 101
>IMGA|Medtr3g024820.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
6346550-6346888 H EGN_Mt090430 20090702
Length = 112
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 644 ILANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEIGRKARENNIAIKLDIAKAF 703
+L R+A ++ +IS Q++F+K R + ++ NE+I ++ RK+++ + K+D KA+
Sbjct: 1 MLVGRLAKVIHCVISANQSTFIKVRQLVDGVVAVNEII-DLSRKSKKECLTFKVDFEKAY 59
Query: 704 DRVSWSFLEAVLFRFGFSQPIVXLIIANLSATRLSVXFNGVNYGFFAPSRGVK 756
D VSW FL+ ++ + F I + + LSV NG RG+K
Sbjct: 60 DLVSWIFLDYMMRKLSFGVIWRCWIRDRIFSGSLSVLVNGSPMEEINIQRGLK 112
>IMGA|Medtr5g013050.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
3891819-3892634 H EGN_Mt090430 20090702
Length = 213
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 646 ANRIAPLLDFLISPKQASFMKGRSIHSQILLANEMIHEI--GRKARENNIAIKLDIAKAF 703
+NR+ PL+ IS + +F+ RSI + L A E++H + K + ++ +KLDI K F
Sbjct: 11 SNRLRPLIRKYISLEHTTFVTSRSIMNNALSAFEILHFMCCKHKGKIGDVVLKLDIPKTF 70
Query: 704 DRVSWSFLEAVLFRFGF 720
D V+WS+L+ V+ F
Sbjct: 71 DTVNWSYLQDVVIIMDF 87
>IMGA|Medtr3g138260.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
35326334-35325873 H EGN_Mt090430 20090702
Length = 153
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 454 LRLEEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEE 513
L+ EE++W Q++ V WL+ GD NTK+FH+ ++ IS+I++ G + I
Sbjct: 64 LKQEELWWAQRAKVHWLKHGDLNTKYFHHKASQRKRKNYISNIQDQSGNFWQDSNKIHSI 123
Query: 514 AVKHFSSLF 522
HF ++F
Sbjct: 124 FSNHFQNIF 132
>IMGA|Medtr1g009630.1 RNA-directed DNA polymerase, related
chr01_pseudomolecule_IMGAG_V3 1363994-1362753 E
EGN_Mt090430 20090702
Length = 180
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 467 VKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVKHFSSLFQGEV 526
+ W DGD NTK FH L K +S ++++ V ++ HFS LFQ V
Sbjct: 1 MHWYRDGDLNTKCFHASALLREKL-ILSYFEDANEVRAQMKYISSMWPKIHFSGLFQ--V 57
Query: 527 MQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDGFDGRFYRDCW 586
+ +I +I+ + N L E K ++ L PG GF+ FY+ W
Sbjct: 58 TDSVRASVINATNQVISEDENTYLVVPFCVEEFKEEMFSLLADKCPGSKGFNLGFYQHFW 117
Query: 587 SIIQWDVCSTVKEFFLGLPIPQSFSCAQIILIPK 620
I +D+ + I S + + L PK
Sbjct: 118 QICSFDIFWEYCYWLTNFQISASLNSTNMTLTPK 151
>IMGA|Medtr3g076330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
17637941-17639415 E EGN_Mt090430 20090702
Length = 123
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 464 KSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWLSLQEDIGEEAVKHFSSLFQ 523
+S +WL +GD+N+KFFH + R F I S+ D V + E + HF+ F+
Sbjct: 14 QSRSQWLREGDANSKFFHFIMFSRRHFNTICSVLVED-VRIEGVEPVRNAIFTHFAQHFK 72
Query: 524 GEVMQQDCSQIIEYLPSLITTEHNLALGAISTDSEIKNAVWQLDPSSAPGPDG 576
+ + + + + +T L + S D E+K A+W D +PGPDG
Sbjct: 73 SQNVVRPSISNLRFRVLSVTAGGGL-IKPFSVD-EVKEAIWDCDSYKSPGPDG 123
>IMGA|Medtr2g042220.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
11787087-11787525 H EGN_Mt090430 20090702
Length = 131
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 454 LRLEEIYWKQKSHVKWLEDGDSNTKFFHNYVKLSRKFQRISSIKNSDGVWL 504
L+ EE+ W Q+S KWL DGD NT+++H R+ + ++NS+G W+
Sbjct: 35 LKTEELMWFQRSRAKWLADGDRNTRYYHLKTVNRRRRNNVVMLRNSEGEWI 85