Jatropha Genome Database

JcCA0044211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0044211.20 - phase: 0 /pseudo/partial
         (99 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g005800.1 Glycerol kinase chr04_pseudomolecule_IMGAG_...    85   1e-17

>IMGA|Medtr4g005800.1 Glycerol kinase chr04_pseudomolecule_IMGAG_V3
           457045-453054 E EGN_Mt090430 20090702
          Length = 519

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 56/82 (68%)

Query: 18  QADLLGNAVVRPADIETTXXXXXXXXXXXIGVWKEEEIFATGEKVKTATTFHPNLHEQQR 77
           QADLL  +V+RPADIETT           +G+WKE+ +F + + +K A+ F P + E+ R
Sbjct: 438 QADLLATSVIRPADIETTALGAAYAAGLAVGIWKEDFVFDSKDLLKNASVFRPLMVEEIR 497

Query: 78  KKKVESWCKAVEKSFGLADLSI 99
           KKKV+SW KAV +SF LADLS+
Sbjct: 498 KKKVDSWGKAVSRSFDLADLSL 519