Jatropha Genome Database

JcCA0042831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0042831.10 - phase: 0 /pseudo
         (342 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g097490.1 3-oxo-5-alpha-steroid 4-dehydrogenase, C-te...   285   2e-77
IMGA|Medtr4g097340.1 3-oxo-5-alpha-steroid 4-dehydrogenase, C-te...   229   1e-60

>IMGA|Medtr4g097490.1 3-oxo-5-alpha-steroid 4-dehydrogenase,
           C-terminal chr04_pseudomolecule_IMGAG_V3
           20880756-20877526 E EGN_Mt090430 20090702
          Length = 332

 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/335 (49%), Positives = 210/335 (62%), Gaps = 16/335 (4%)

Query: 1   MDIRLDWLLRAAWISATLPILIASFPSSRLNSFHQLLLGFSRRGKTMQPSSHFTVPQRFF 60
           M   L  LLR +WI+ATLPI+I S P   LN   Q+LLGF++RGKT   S  FTVPQRFF
Sbjct: 1   MKTLLVSLLRLSWIAATLPIIIVSIPIPNLNFLRQILLGFAKRGKTSSSSQKFTVPQRFF 60

Query: 61  LHFYLVGVALTTFLLIIIWGYAYKLASLDSGSLDYSTAASQLVGGSQIYSLHVSHFPTLA 120
           LHFY+V    TTFLL+  W YAY++A L +  L YST    L GG  I   H S    L 
Sbjct: 61  LHFYVVSSIWTTFLLVATWIYAYRMAPLVADPLSYSTLTGFLTGGLTIR--HGSD--KLR 116

Query: 121 YRHKIWISVFLLLLMEMQVLRRLYETVYVLKYSSSARMHIFGYLVGLFFYTVAPLTLCYS 180
             +  W +VFLLLLME QVLRRL+ET++V  YS SARMHI GYL GLF+Y  APL+LC  
Sbjct: 117 EGYVAWQAVFLLLLMEAQVLRRLFETIHVFNYSPSARMHIIGYLTGLFYYIGAPLSLCGD 176

Query: 181 CAFEAFNFAAYQMIEANVKNQQTVAV-DFDWWRLVKPFVKLGWCHWVGAAIFAWGWLHQL 239
           CA E F+F    + E  VK +  + V + ++  L+ P  +LGW HW+GAAIF+WGW+HQ 
Sbjct: 177 CALEVFDFLLNLVTEFIVKGKNQMPVPEIEFSLLLNPLTRLGWKHWIGAAIFSWGWIHQY 236

Query: 240 RCHAILGSLREDREQNEEYGIPRGDWFEIVSSPHYLAEMRRYDETLSRGYLYFCHVVGST 299
           RCH ILGSLRE R Q +EY IPRGDWFEIVSSPHYL+E+           +Y   VV + 
Sbjct: 237 RCHKILGSLRESR-QADEYVIPRGDWFEIVSSPHYLSEI----------VIYASFVVATG 285

Query: 300 FPGLSGLMRFHFVTSSTVFRCRDLELIFA*KYADF 334
              L+  + F FV ++  F   +    +  K+ D+
Sbjct: 286 GSNLTIWLLFAFVVANLAFAAVETHSWYRRKFEDY 320


>IMGA|Medtr4g097340.1 3-oxo-5-alpha-steroid 4-dehydrogenase,
           C-terminal chr04_pseudomolecule_IMGAG_V3
           20806327-20809560 E EGN_Mt090430 20090702
          Length = 280

 Score =  229 bits (585), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/334 (44%), Positives = 181/334 (54%), Gaps = 66/334 (19%)

Query: 1   MDIRLDWLLRAAWISATLPILIASFPSSRLNSFHQLLLGFSRRGKTMQPSSHFTVPQRFF 60
           M   L  LLR +WI+ATLPI+I S P   LN   Q+LLGF++RGKT   S  FTVPQRFF
Sbjct: 1   MKTLLVSLLRLSWIAATLPIIIVSIPIPNLNFLRQILLGFAKRGKTSSSSQKFTVPQRFF 60

Query: 61  LHFYLVGVALTTFLLIIIWGYAYKLASLDSGSLDYSTAASQLVGGSQIYSLHVSHFPTLA 120
           LHFY+V    TTFLL+  W YAY++A L +  L YST    L GG  I   H S    L 
Sbjct: 61  LHFYVVSSIWTTFLLVATWIYAYRMAPLVADPLSYSTLTGFLTGGLTIR--HGSD--KLR 116

Query: 121 YRHKIWISVFLLLLMEMQVLRRLYETVYVLKYSSSARMHIFGYLVGLFFYTVAPLTLCYS 180
             +  W +VFLLLLME QVLRRL+ET++V  YS SARMHI GYL GL             
Sbjct: 117 EGYVAWQAVFLLLLMEAQVLRRLFETIHVFNYSPSARMHIIGYLTGLL------------ 164

Query: 181 CAFEAFNFAAYQMIEANVKNQQTVAVDFDWWRLVKPFVKLGWCHWVGAAIFAWGWLHQLR 240
                                                  LGW HW+GAAIF+WGW+HQ R
Sbjct: 165 ---------------------------------------LGWKHWIGAAIFSWGWIHQYR 185

Query: 241 CHAILGSLREDREQNEEYGIPRGDWFEIVSSPHYLAEMRRYDETLSRGYLYFCHVVGSTF 300
           CH ILGSLRE R Q +EY IPRGDWFEIVSSPHYL+E+           +Y   VV +  
Sbjct: 186 CHKILGSLRESR-QADEYVIPRGDWFEIVSSPHYLSEI----------VIYASFVVATGG 234

Query: 301 PGLSGLMRFHFVTSSTVFRCRDLELIFA*KYADF 334
             L+  + F FV ++  F   +    +  K+ D+
Sbjct: 235 SNLTIWLLFAFVVANLAFAAVETHSWYRRKFEDY 268