Jatropha Genome Database

JcCA0042101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0042101.10 + phase: 0 
         (462 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g046610.1 Intron-binding protein aquarius, putative c...   649   0.0  

>IMGA|Medtr1g046610.1 Intron-binding protein aquarius, putative
           chr01_pseudomolecule_IMGAG_V3 10939663-10929558 E
           EGN_Mt090430 20090702
          Length = 1467

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/449 (73%), Positives = 378/449 (84%), Gaps = 23/449 (5%)

Query: 1   MTKVYGTGAYDFKRHRVAEYPVELQTQLSDKPVE---SKPGSTLPSSITLSEIQRDRLTK 57
           MTKVYGTG YDF+RHRVAEYP+        KPVE      G  LP++IT+SEIQRDRLTK
Sbjct: 1   MTKVYGTGTYDFRRHRVAEYPLA-----EPKPVEWSQKSGGGGLPNNITVSEIQRDRLTK 55

Query: 58  IAAENWLKTGGTESDGTKKKEFDPELVKQIYETELKVKEGR---KTVPLQRVMILEVSQY 114
           IA  NWLK  G+E    KKKEFD ELVK+IYETEL VKEG+   K VPLQRVMILEVSQY
Sbjct: 56  IAESNWLK--GSE----KKKEFDGELVKKIYETELLVKEGQGNNKPVPLQRVMILEVSQY 109

Query: 115 LENYLWPNFDPETATFEHVMSMILMINEKFRENVAAWLCFYDRKDVFKGFLERVLQLKEG 174
           LENYLW NFDPETA+FEHVMS+I+M+NEKFRENVAAW+CF+DRKDVFK FLERV++LKEG
Sbjct: 110 LENYLWVNFDPETASFEHVMSIIIMVNEKFRENVAAWVCFHDRKDVFKEFLERVIRLKEG 169

Query: 175 RELSISEKTNYLVFMINAFQSLEDEIVSETVLKLGSLQSWHCLSYGRFQMELCLNPELIK 234
           REL+I+EKTNYLVFMINAFQSLEDE+V+E VL+L  L+SW  LSYGRFQMELCLNP L+K
Sbjct: 170 RELNIAEKTNYLVFMINAFQSLEDEVVNEAVLRLADLKSWFSLSYGRFQMELCLNPGLVK 229

Query: 235 KWKRMVKREIKEAMKGGQPFDPSTSLEVKFLRNLIEEFLDVLDFQIFPQKS-SINGDGLA 293
           KWK M+K   KE +KGG+  DPST++EV FLRNLIEEFL++LD Q+F Q+  S   D L 
Sbjct: 230 KWKNMLK---KEPVKGGKHLDPSTTVEVTFLRNLIEEFLEILDSQVFYQRQLSGEDDELI 286

Query: 294 --SGFEEVDDSAVLYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSALYKHEKG 351
             +G   ++D+ VLYCERFMEFLIDLLSQL TRRYLRPLVADVAVVAKCHLSALY+HEKG
Sbjct: 287 NETGSWLINDACVLYCERFMEFLIDLLSQLATRRYLRPLVADVAVVAKCHLSALYRHEKG 346

Query: 352 KLFAQLVDLLQFYERFEINDHSGTQLTDDEVLQSHYDRFQAFQLLAFKKIPKLRELALSN 411
           KLFAQLVDLLQFYE FEINDH+G QLTD EV++SHY R Q+FQLLAFKKI KLRELAL+N
Sbjct: 347 KLFAQLVDLLQFYEGFEINDHTGVQLTDHEVVESHYSRLQSFQLLAFKKIDKLRELALTN 406

Query: 412 IGAIHKRADLSKKLSVLSPEELKDLVCAR 440
           IG+IH RA+LSKKLSVLSPEEL+DLVC +
Sbjct: 407 IGSIHTRANLSKKLSVLSPEELRDLVCCK 435