Jatropha Genome Database
- JcCA0041501.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0041501.20 - phase: 1 /TE
(1334 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 157 3e-38
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 146 8e-35
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 142 9e-34
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 130 5e-30
IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse transc... 113 7e-25
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 108 2e-23
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 97 4e-20
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 85 3e-16
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 83 8e-16
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 70 6e-12
IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcrip... 69 1e-11
IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse transc... 65 2e-10
IMGA|Medtr6g070680.1 RNA-directed DNA polymerase (Reverse transc... 64 4e-10
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 62 2e-09
IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse transc... 57 5e-08
IMGA|Medtr2g116920.1 Enzymatic polyprotein, putative chr02_pseud... 55 2e-07
IMGA|Medtr6g065010.1 reverse transcriptase, putative chr06_pseud... 55 2e-07
IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 ... 54 4e-07
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch... 52 2e-06
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcriptase)
AC234026.1 2154-4412 H EGN_Mt090430 20090702
Length = 705
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 154/296 (52%), Gaps = 13/296 (4%)
Query: 1034 PIQMSPELIDHCKKE-----IQDLENKKLISKSRSPWSCAAFYVNKNAEIERGIPRLVIN 1088
PI + P H +KE + +L +I S S +S V K + R + ++
Sbjct: 152 PINVRPYKYPHHQKEEIEKQVAELLAAGVIRPSMSAYSSPVILVKKKDKSWR----MCVD 207
Query: 1089 YKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYKTAFTVPFG 1148
Y+ LN A +YP+P +LL +LY A IFSK D+KSGY QI++H ND +KTAF G
Sbjct: 208 YRALNKARIPDKYPIPVVDELLDELYGATIFSKIDLKSGYHQIRVHENDIHKTAFRTHNG 267
Query: 1149 QYEWNVMPFGLKNAPSEFQRIMNDIFNPY-SEFCIVYIDDVLVFSRTLEEHFKHLKTFCM 1207
YE+ VMPFGL NAP+ FQ MNDIF P+ +F +V+ DD+L++S+ L EH HL
Sbjct: 268 HYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILIYSKDLAEHQSHLNQVLT 327
Query: 1208 VIEMNGLALSKTKMDLFKTKVRFLGHYIE-QGLIQPIERAMVFGSKFPDELTNKTQLQRF 1266
++ N + +K +V +LGH I +G+ E+ ++P E N ++ F
Sbjct: 328 ILFSNCFVANLSKCKFGCVEVDYLGHVISGKGVAVDPEKIRCI-LEWP-EPKNVKGVRGF 385
Query: 1267 LGCLNYVIDFYPNLNCMIKPLHDRLKKNTGPWTAQHTQLVKKIKSLVKEIPYLYIP 1322
LG Y F + + KPL + KK+ W+ + ++K ++ L +P
Sbjct: 386 LGLTGYYRKFVKDYGKIAKPLTELTKKDGFSWSPTAAEAFNRLKHIMTSPLVLVLP 441
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
9673679-9667953 H EGN_Mt090430 20090702
Length = 1435
Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 130/253 (51%), Gaps = 6/253 (2%)
Query: 1084 RLVINYKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYKTAF 1143
R +Y+ LN +P+P +LL +L+ A FSK D+ SGY QI + DR+KTAF
Sbjct: 635 RFCTDYRALNAITVKDSFPIPTVDELLDELFGAAYFSKLDLLSGYHQILVKSEDRHKTAF 694
Query: 1144 TVPFGQYEWNVMPFGLKNAPSEFQRIMNDIF-NPYSEFCIVYIDDVLVFSRTLEEHFKHL 1202
G YEW VMPFGL NAP+ FQ +MN +F N +V+ DD+LV+S T H HL
Sbjct: 695 RTHQGLYEWLVMPFGLSNAPASFQNLMNKVFCNLLRRSVLVFFDDILVYSPTWHAHLAHL 754
Query: 1203 KTFCMVIEMNGLALSKTKMDLFKTKVRFLGHYIE-QGLIQPIERA-MVFGSKFPDELTNK 1260
+ +++ + L +K T++ +LGH + QG+ + V P TN
Sbjct: 755 EEVLQLLQTHSLFAKISKCCFGMTQIDYLGHTVSGQGVAMDCSKVKAVLDWPTP---TNL 811
Query: 1261 TQLQRFLGCLNYVIDFYPNLNCMIKPLHDRLKKNTGPWTAQHTQLVKKIKSLVKEIPYLY 1320
QL+ FLG Y F + PL D LKK++ WT +++K + + P L
Sbjct: 812 KQLRGFLGLTGYYRRFIQGYAAVASPLTDLLKKDSFKWTENAQLAFERLKQSLTKAPVLS 871
Query: 1321 IPHPTAFKIVETD 1333
+P + ++ETD
Sbjct: 872 LPDFSKSFVLETD 884
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 1034 PIQMSPELIDHCKKE-----IQDLENKKLISKSRSPWSCAAFYVNKNAEIERGIPRLVIN 1088
P+ + P H +KE I D+ + +I S SP+S V K + G R ++
Sbjct: 572 PVNVKPYRYPHSQKEAMTTIIHDMLHDGIIVPSTSPYSSPVLLVRK----KDGSWRFCVD 627
Query: 1089 YKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYKTAFTVPFG 1148
Y+ LN R+P+P +L +L A++FSK D++SGY QI++ P D +KT F G
Sbjct: 628 YRALNAVTICDRFPIPTIDELFDELGSASLFSKTDLRSGYHQIRVVPEDTHKTTFRTFDG 687
Query: 1149 QYEWNVMPFGLKNAPSEFQRIMNDIFNPYSEFCIVYIDDVLVFSRTLEEHFKHLKTFCMV 1208
YE+ VMPFGL NAPS FQ MND PY + R+L++H HL+ +
Sbjct: 688 HYEFLVMPFGLSNAPSTFQSAMNDFLRPY------------LRRRSLDDHLIHLRLILDL 735
Query: 1209 IEMNGLALSKTKMDLFKTKVRFLGHYIEQGLIQPIERAM--VFGSKFPDELTNKTQLQRF 1266
+ + +K + +LGH I +QP E + + P LT L+ F
Sbjct: 736 LASHHFVAKMSKCVFAVDTIDYLGHIISHKGVQPDEDKIQAILSWPTPRSLTT---LRGF 792
Query: 1267 LGCLNYVIDFYPNLNCMIKPLHDRLKKNTGPWTAQHTQLVKKIKSLVKEIPYLYIPHPTA 1326
LG +++ F + + PL D L+ A K+K + P L +P+ +
Sbjct: 793 LGLISFYRRFVRHYATLAAPLTDLLRSTKFTLNATAEAAFSKLKEQITTTPVLILPNFSK 852
Query: 1327 FKIVETD 1333
+VETD
Sbjct: 853 LFVVETD 859
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 20/280 (7%)
Query: 1054 NKKLISKSRSPWSCAAFYVNKNAEIERGIPRLVINYKPLNTALKWIRYPLPNKKDLLKQL 1113
+ LI SR P+S V K G R ++Y+ LN A+K R+PLP +LL L
Sbjct: 3 SSGLIQPSRGPFSSHVLLVKKKV----GSWRCCVDYRALN-AIK-DRFPLPTIDELLDDL 56
Query: 1114 YQANIFSKFDMKSGYWQIQIHPNDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDI 1173
+A+ FSK D++ G+ QI++ P D KTAF G YE VMPFGL NAPS F+ MN++
Sbjct: 57 GKASWFSKLDLQQGFHQIRMAPEDIPKTAFRTHHGHYECKVMPFGLCNAPSTFKSTMNNL 116
Query: 1174 FNPYSEFCIVYIDDVLVFSRTLEEHFKHLKTFCMVIEMNGLALSKTKMDLFKTKVRFLGH 1233
F P+ + +H HL+ + L ++K + ++ +LGH
Sbjct: 117 FQPF-------------LRKFAADHLTHLQLILTKLLEAQFFLKQSKCLFGQRQLEYLGH 163
Query: 1234 YIEQGLIQPIERAMVFGSKFPDELTNKTQLQRFLGCLNYVIDFYPNLNCMIKPLHDRLKK 1293
I Q IQ + ++P T+ T L+RFLG + F + PL + LKK
Sbjct: 164 IISQKGIQADPSKLQAMVEWPQP-TSTTLLRRFLGLTGFYRKFIKGYASIAAPLTNLLKK 222
Query: 1294 NTGPWTAQHTQLVKKIKSLVKEIPYLYIPHPTAFKIVETD 1333
++ W+ + + +K + E P L +P T +ETD
Sbjct: 223 DSFIWSPEAEHSFQTLKKAMTEAPTLAVPDFTLPFDLETD 262
>IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
21895306-21893422 E EGN_Mt090430 20090702
Length = 306
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 1159 LKNAPSEFQRIMNDIFNPYSEFCIVYIDDVLVFS-RTLEEHFKHLKTFCMVIEMNGLALS 1217
+K +P FQR M+ I + +FC++YIDD+LVFS + L++HFK ++ +G+ LS
Sbjct: 1 MKQSPGIFQRRMDTILKEFKDFCLIYIDDILVFSNKDLDDHFKKVELVLNKCFEHGVVLS 60
Query: 1218 KTKMDLFKTKVRFLGHYIEQGLIQPIERAMVFGSKFPDELTNKTQLQRFLGCLNYVI--D 1275
K K + + K+ +LG IE+G + + KFP +L +K +LQRFLG L Y+
Sbjct: 61 KKKAVVAQNKINYLGLEIEKGKFLMQKHVLEKLQKFPTKLKDKKELQRFLGLLTYISYEG 120
Query: 1276 FYPNLNCMIKPLHDRLKKNT-GPWTAQHTQLVKKIKSLVKEIPYLYIPHPTAFKIVETD 1333
F NL K L +LKK++ WT L+ K+K+L +++P LY P I+ETD
Sbjct: 121 FIKNLAAESKLLQQKLKKDSIWSWTEDDEVLITKLKNLCQDLPELYHPSDDDLIIIETD 179
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 3/244 (1%)
Query: 1081 GIPRLVINYKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYK 1140
G R+ ++++ LN A +PLP+ L+ Q+ +FS D SGY QI++ P DR K
Sbjct: 152 GKVRMSVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 211
Query: 1141 TAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPYSEFCI-VYIDDVLVFSRTLEEHF 1199
T+F P+G + + VMPFGL NA + +QR M +F+ + VY+DD++V S E+H
Sbjct: 212 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHV 271
Query: 1200 KHLKTFCMVIEMNGLALSKTKMDLFKTKVRFLGHYIEQGLIQPIERAMVFGSKFPDELTN 1259
++L + L L+ K + LG + Q I+ + + P T
Sbjct: 272 EYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTE 331
Query: 1260 KTQLQRFLGCLNYVIDFYPNLNCMIKPLHDRLKKNTG-PWTAQHTQLVKKIKSLVKEIPY 1318
K Q++ FLG LNY+ F ++ P+ L+KN W + + IK+ + E P
Sbjct: 332 K-QVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPI 390
Query: 1319 LYIP 1322
L P
Sbjct: 391 LVPP 394
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 2/201 (0%)
Query: 1081 GIPRLVINYKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYK 1140
G R+ ++++ LN A +PLP+ L+ Q+ +FS D SGY QI++ P DR K
Sbjct: 20 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 79
Query: 1141 TAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPYSEFCI-VYIDDVLVFSRTLEEHF 1199
T+F P+G + + VMPFGL NA + +QR M +F+ + VY+DD++V S E+H
Sbjct: 80 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHV 139
Query: 1200 KHLKTFCMVIEMNGLALSKTKMDLFKTKVRFLGHYIEQGLIQPIERAMVFGSKFPDELTN 1259
++L + L L+ K + LG + Q I+ + + P T
Sbjct: 140 EYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFVVSQKGIEVDPDKVRAIREMPAPQTE 199
Query: 1260 KTQLQRFLGCLNYVIDFYPNL 1280
K Q++ FLG LNY+ F ++
Sbjct: 200 K-QVRGFLGRLNYISRFISHM 219
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 123/288 (42%), Gaps = 18/288 (6%)
Query: 1047 KEIQDLENKKLISKSRSP-WSCAAFYVNKNAEIERGIPRLVINYKPLNTALKWIRYPLPN 1105
+E++ L + + IS+ + P W V K E G R+ ++Y LN YPLPN
Sbjct: 11 EEVKKLVDARFISEIKYPTWLANTVLVKK----ENGKWRMCVDYTDLNMVCPKYPYPLPN 66
Query: 1106 KKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYKTAFTVPFGQYEWNVMPFGLKNAPSE 1165
L+ S D SGY QI++ P D KTAF Y + VM FGLKNA +
Sbjct: 67 IDHLIDNASGFKTLSFMDAYSGYNQIRMDPLDAPKTAFMTNTKNYHYEVMYFGLKNAGAT 126
Query: 1166 FQRIMNDIFN-PYSEFCIVYIDDVLVFSRTLEEHFKHLKTFCMVIEMNGLALSKTKMDLF 1224
FQR M+ F+ VYIDD++ ++ H L+ + + L+ TK
Sbjct: 127 FQRSMDTAFSQQIGRNREVYIDDLVAKTKEGLSHTDDLEEILGQVRKYRIRLNPTKCSFG 186
Query: 1225 KTKVRFLGHYIEQ-GLIQPIERA-MVFGSKFPDELTNKTQLQRFLG----CLNYVIDFYP 1278
+FLG + + G+ ++ + + P + QL L CL+ D
Sbjct: 187 VQVGKFLGFLLTRWGIEANTDKCQAIINMRSPSNVKEVQQLTGRLAALSRCLSCAGDKAF 246
Query: 1279 NLNCMIKPLHDRLKKNTGPWTAQHTQLVKKIKSLVKEIPYLYIPHPTA 1326
+ IK KK WTA+ ++IK + +P L P+ A
Sbjct: 247 SFFASIK------KKEKFEWTAECEDAFQQIKMFLSSLPLLQRPNKNA 288
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 83.2 bits (204), Expect = 8e-16, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 1081 GIPRLVINYKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYK 1140
G R+ ++++ LN A +PLP+ L+ Q+ +FS D SGY QI++ P DR K
Sbjct: 20 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 79
Query: 1141 TAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPYSEFCI-VYIDDVLVFSRTLEEHF 1199
T+F P+G + + VM FGL NA + +QR M +F+ + VY+DD++V S E+H
Sbjct: 80 TSFITPWGTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHV 139
Query: 1200 KHL 1202
++L
Sbjct: 140 EYL 142
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase, Ribonuclease
H fold AC229695.5 96798-94993 H EGN_Mt090430 20090702
Length = 555
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Query: 1170 MNDIFNPY-SEFCIVYIDDVLVFSRTLEEHFKHLKTFCMVIEMNGLALSKTKMDLFKTKV 1228
MN++ PY +F +V+ DD+LV+S+ +E H HL +++ + L + K + ++
Sbjct: 1 MNEVLRPYLRKFALVFFDDILVYSKDVEHHKHHLGAVLALLKEHQLVANYKKCTFGQHQL 60
Query: 1229 RFLGHYIEQGLIQPIERAMVFGSKFPDELTNKTQLQRFLGCLNYVIDFYPNLNCMIKPLH 1288
+LGH I + ++ + +P K+ L+ FLG Y F N + KPL
Sbjct: 61 EYLGHIISAQGVAADQKKVDVMLTWPRPKDLKS-LRGFLGLTGYYRRFVRNYGSIAKPLT 119
Query: 1289 DRLKKNTGPWTAQHTQLVKKIKSLVKEIPYLYIPHPTAFKIVETD 1333
LKK+ W + +K + E+P L +P+ + ++ETD
Sbjct: 120 HLLKKDNFLWNEEAQLSFDTLKKAMAELPILSVPNFSIPFVIETD 164
>IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcriptase)
AC233082.3 16661-16311 H EGN_Mt090430 20090702
Length = 116
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 1155 MPFGLKNAPSEFQRIMNDIFNPY-SEFCIVYIDDVLVFSRTLEEHFKHLKTFCMVIEMNG 1213
MPFGL NAPS FQ MND+ PY F +V+ DD+L++S + +H HL+ ++ N
Sbjct: 1 MPFGLSNAPSSFQSAMNDMLRPYLRRFVLVFFDDILIYSTNMADHLIHLRLILDLLVTNQ 60
Query: 1214 LALSKTKMDLFKTKVRFLGHYIE-QGLIQPIERAMVFGSKFPDELTNKTQLQRFLG 1268
+K V +LGH I QG+ E+ + +P + T L+ FLG
Sbjct: 61 FVAKLSKCVFAVETVHYLGHVISAQGVKADPEKVTAI-TDWPKP-HSLTALRGFLG 114
>IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13291757-13291422 H EGN_Mt090430 20090702
Length = 111
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 1085 LVINYKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYKTAFT 1144
+ +Y LN YPLP+ L+ + ++ S D SGY +I++H D KTAF
Sbjct: 1 MCTDYTNLNKVCPKDAYPLPSIDQLVHNTSRYDLLSFMDAYSGYNKIRMHLEDEEKTAFM 60
Query: 1145 VPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPYSEFCI-VYIDDVLVFS 1192
Y + MPFGL+N + FQR+++ +F I VY+DD++V S
Sbjct: 61 TDKANYCYKGMPFGLRNTGATFQRLVDKVFKSEIGKTIEVYVDDMVVKS 109
>IMGA|Medtr6g070680.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr06_pseudomolecule_IMGAG_V3
13406591-13406911 H EGN_Mt090430 20090702
Length = 106
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 1159 LKNAPSEFQRIMNDIFNPYSEFCIVYIDDVLVFS-RTLEEHFKHLKTFCMVIEMNGLALS 1217
+K + FQR M+ I + +FC++YIDD+LVFS + L+++FK ++ +G+ LS
Sbjct: 1 MKQSQGIFQRRMDTILKEFKDFCLIYIDDILVFSNKDLDDYFKKVELVLNKCVEHGVVLS 60
Query: 1218 KTKMDLFKTKVRFLGHYIEQGLIQPIERAMVFGSKFPDELTNKTQL 1263
K K + + K+ +LG IE+G I + + FP +L +K +L
Sbjct: 61 KKKAVVAQNKINYLGLEIEKGKILMQKHVLEKLQNFPTQLKDKKEL 106
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 2/157 (1%)
Query: 1085 LVINYKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYKTAFT 1144
+ + Y L+ YPL N L+ +FS D S Y QI + P D KT F
Sbjct: 1 MSVEYSDLSRVCPKDTYPLINIDKLVDNSSGYKLFSFMDFFSMYNQIPLDPKDEDKTTFM 60
Query: 1145 VPFGQYEWNVMPFGLKNAPSEFQRIMNDIF-NPYSEFCIVYIDDVLVFSRTLEEHFKHLK 1203
V G + + VM F LKN +QR+MN++F + + V +DD++V R +H HL
Sbjct: 61 VEAGNHFYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKVCMDDMIVKYREELDHMSHLN 120
Query: 1204 TFCMVIEMNGLALSKTKMDLFKTKVRFLGHYI-EQGL 1239
+ + + + +F+G Y+ E+G+
Sbjct: 121 VVFIKVRKYNMHSNLENCTFGVKAAKFMGLYLTEKGI 157
>IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
44106402-44105385 H EGN_Mt090430 20090702
Length = 308
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 14/189 (7%)
Query: 981 DXDIQIRIGK-LKAFMENRLCA---DHPNAF-WNRKQHIVDLP----YEKDFDEKSITTK 1031
D +IGK L + +L A +P+ F W+R V P ++ D
Sbjct: 124 DPSKNFKIGKDLPELIRAQLVACLKQNPDLFAWSRADMPVIDPSVACHQLTVDPGISVVA 183
Query: 1032 ARPIQMSPELIDHCKKEIQD-LENKKLISKSRSPWSCAAFYVNKNAEIERGIPRLVINYK 1090
R + SPE +K ++D LE K ++ + W V K+ G R+ ++Y
Sbjct: 184 QRRRKQSPEKSVAAEKTVKDFLEEKFILEAKYTTWLSNVVLVKKS----NGKWRMSVDYT 239
Query: 1091 PLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYKTAFTVPFGQY 1150
LN YPLPN L+ + S D GY QI + D+ KT F G Y
Sbjct: 240 DLNRVCPKDAYPLPNIDKLVDNSSGFKLLSFMDAYFGYNQIPMVEGDKMKTTFMTESGNY 299
Query: 1151 EWNVMPFGL 1159
+NVMPFGL
Sbjct: 300 YYNVMPFGL 308
>IMGA|Medtr2g116920.1 Enzymatic polyprotein, putative
chr02_pseudomolecule_IMGAG_V3 27381410-27382276 H
EGN_Mt090430 20090702
Length = 288
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 1207 MVIEMNGLALSKTKMDLFKTKVRFLGHYI-EQGLIQPIERAMVFGSKFPDELTNKTQLQR 1265
+ ++ G+ +SK K + + ++ +LG + E G + F +E +++ Q+QR
Sbjct: 4 LRVKEKGIVISKKKSKICQKEIEYLGLILKENGELSLAPHTQEKIQAFSNEFSDRKQIQR 63
Query: 1266 FLGCLNYVID--FYPNLNCMIKPLHDRLKKNTGPWTAQHTQLVKKIKSLVKEIPYLYIPH 1323
FLGCLNY+ + F+ +L K L ++ + PW+ T K ++ +P LY P
Sbjct: 64 FLGCLNYIANEGFFKDLAKERKHLQKKISEKI-PWSWTKTD---SDKEKIQVLPELYNPT 119
Query: 1324 PTAFKIVETD 1333
F IVETD
Sbjct: 120 IKDFLIVETD 129
>IMGA|Medtr6g065010.1 reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12073349-12073158 H
EGN_Mt090430 20090702
Length = 63
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 1155 MPFGLKNAPSEFQRIMNDIFNPYSE-FCIVYIDDVLVFSRTLEEHFKHL 1202
MPFGL NAPS FQ IMN IF+P+ F IV+ D +L++ T +H HL
Sbjct: 1 MPFGLCNAPSIFQAIMNQIFSPHLRCFVIVFFDAILIYIHTFHDHLIHL 49
>IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 H
EGN_Mt090430 20090702
Length = 72
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 34/61 (55%)
Query: 1101 YPLPNKKDLLKQLYQANIFSKFDMKSGYWQIQIHPNDRYKTAFTVPFGQYEWNVMPFGLK 1160
YPLPN L+ +FS D S Y QI + D+ KTAF G Y +NVMPFGL+
Sbjct: 8 YPLPNIDKLVDNSSGYKLFSFMDTYSRYNQILMAEGDKKKTAFMTESGNYYYNVMPFGLR 67
Query: 1161 N 1161
N
Sbjct: 68 N 68
>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
EGN_Mt090430 20090702
Length = 460
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 1016 DLPYEKDFDEKS--ITTKARP----IQMSPELIDHCKKEIQDLENKKLISKSRSPWSCAA 1069
DLP +D K I + P +MS + + +++I+DL K I +S S
Sbjct: 25 DLPSMRDIQHKIDLIPCSSLPNLPHYRMSSKENEIVREQIEDLLRKGFIRESMSSCDVPV 84
Query: 1070 FYVNKNA-EIERGIPRLVINYKPLNTALKWIRYPLPNKKDLLKQLYQANIFSKFDMKSGY 1128
V K + + + VIN +K+ ++P+P +D+L + +
Sbjct: 85 LLVPKKGNQWRKCVESRVIN----KITIKY-QFPIPRLEDMLDE---------------F 124
Query: 1129 WQIQIHPNDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDI 1173
++I P D +T F G YE VMPF L NAPS F R+MN +
Sbjct: 125 QNLRIRPGDERQTYFKSKDGLYESLVMPFRLSNAPSTFMRLMNQV 169