Jatropha Genome Database
- JcCA0040611.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0040611.10 - phase: 2 /TE/partial
(175 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 145 9e-36
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 139 9e-34
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 137 4e-33
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 131 2e-31
IMGA|Medtr7g123950.1 Retrotransposon gag protein chr07_pseudomol... 124 2e-29
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 124 4e-29
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 122 9e-29
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 122 1e-28
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 120 3e-28
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 120 5e-28
IMGA|Medtr3g019580.1 Retrotransposon gag protein chr03_pseudomol... 118 2e-27
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 114 2e-26
IMGA|Medtr7g126870.1 hypothetical protein chr07_pseudomolecule_I... 111 2e-25
IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related chr0... 111 2e-25
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 105 2e-23
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 104 2e-23
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 104 2e-23
IMGA|Medtr7g045780.1 Retrotransposon gag protein chr07_pseudomol... 102 1e-22
IMGA|Medtr6g069740.1 Zinc finger, C4-type chr06_pseudomolecule_I... 92 1e-19
IMGA|Medtr5g032700.1 Polynucleotidyl transferase, Ribonuclease H... 89 1e-18
IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG... 86 1e-17
IMGA|Medtr3g080970.1 Retrotransposon gag protein chr03_pseudomol... 86 1e-17
IMGA|Medtr5g076530.1 Polynucleotidyl transferase, Ribonuclease H... 77 5e-15
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 75 2e-14
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 63 7e-11
IMGA|Medtr3g040850.1 Retrotransposon gag protein chr03_pseudomol... 58 3e-09
IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H... 57 7e-09
IMGA|Medtr1g137300.1 TIR-NBS-LRR type disease resistance protein... 53 6e-08
IMGA|Medtr7g029520.1 Integrase, catalytic region, putative chr07... 52 1e-07
IMGA|Medtr6g036540.1 Zinc finger, CCHC-type chr06_pseudomolecule... 49 1e-06
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 145 bits (367), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 99/148 (66%)
Query: 27 LFPPPK*KSALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPS 86
F P VLVS T NYH+W+RAMK AL+SKNK+ F++G++ PS DS Y
Sbjct: 31 FFLHPSENPGAVLVSTPLTDHNYHNWSRAMKRALSSKNKIRFINGTLPKPSYLDSTYDLW 90
Query: 87 QRRNTMVISWLTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQ 146
R + MV+SW+TR+L P I QS + I+ A +WKDL+DRF++G+ R+ DL +++ +Q
Sbjct: 91 DRCDNMVLSWITRTLSPHIFQSTICIESAFELWKDLEDRFSKGNFFRVSDLLRDLHSTQQ 150
Query: 147 GELSVTDYFTQLKIL*DELMNFRPIPSC 174
G+ S++ YFT +KIL DEL + RP PSC
Sbjct: 151 GDRSLSKYFTNMKILWDELEDLRPTPSC 178
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 22 ESIQSLFPPPK*KSALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDS 81
+S+ F S+ V V+P TG NYHSW+ M+ ALA KNK FVDGSI P D
Sbjct: 14 QSLDPYFVHSSENSSTVSVTPQLTGENYHSWSMKMRRALAMKNKYKFVDGSIPIPD-EDD 72
Query: 82 MYHPS-QRRNTMVISWLTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEE 140
+ P+ +R N +V +W+ S+ PSIA S+++I+ A ++W DL+DRF +GD IR+ L +E
Sbjct: 73 LNRPAWERCNNLVHTWIINSISPSIAHSVVFIEHAIDMWNDLKDRFMRGDRIRVAQLHQE 132
Query: 141 IYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSC 174
I +QG+ +TDYFT+L+ L +EL +RP+P C
Sbjct: 133 IANLKQGDHKITDYFTELRGLWEELDQYRPMPQC 166
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 94/137 (68%)
Query: 38 VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
V ++P + SNYHSWAR+M+ AL +KNK FVDGSI P+ D + R N +V SW+
Sbjct: 41 VAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAWNRCNMLVHSWI 100
Query: 98 TRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQ 157
S+ SIAQSI++++ A ++W +L++RF+QGD IRI +LQ EI+ +Q SVT++FT
Sbjct: 101 MNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEFFTA 160
Query: 158 LKIL*DELMNFRPIPSC 174
LK+L +EL + P P C
Sbjct: 161 LKVLWEELEAYLPTPVC 177
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 93/137 (67%)
Query: 38 VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
++VSP GSNY +W R+MK +L +KNKLGF++GSI P + D +R N +V SW+
Sbjct: 25 LIVSPKLDGSNYLAWNRSMKRSLGTKNKLGFINGSIEQPDLDDLNRSAWERCNFLVQSWI 84
Query: 98 TRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQ 157
S+ SIAQ++++ D A +W+DL +RF++ D IRI +L+ I +QG SV +YFT+
Sbjct: 85 INSVSDSIAQTVVFYDTAYEVWQDLHERFSKADRIRIANLRSSINNLKQGAKSVLEYFTE 144
Query: 158 LKIL*DELMNFRPIPSC 174
LK L +EL + RPIPSC
Sbjct: 145 LKSLWEELSSHRPIPSC 161
>IMGA|Medtr7g123950.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 29015812-29013196 E
EGN_Mt090430 20090702
Length = 302
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 93/139 (66%)
Query: 36 ALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVIS 95
+ LV+ G NY W+R+M ++L++KNKLG +DG++ +PS D +R N +V++
Sbjct: 44 GISLVNQPLNGGNYGEWSRSMLLSLSAKNKLGLIDGTVKAPSADDPKLPLWKRCNDLVLT 103
Query: 96 WLTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYF 155
W+ S+ P IA+S+++ D A +W DL DRF+QGD RI+ +++EI RQG L ++DY+
Sbjct: 104 WILHSIEPDIARSVIFSDTAAAVWSDLHDRFSQGDESRIYQIRQEISECRQGSLLISDYY 163
Query: 156 TQLKIL*DELMNFRPIPSC 174
T+LK L DEL +++ +C
Sbjct: 164 TKLKSLWDELGSYQEPITC 182
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 94/149 (63%)
Query: 26 SLFPPPK*KSALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHP 85
+LF P ++V+P G+NY +W+R+M+ AL +K KLGF++G I P D
Sbjct: 17 ALFVHPSEGLHSLVVTPKFNGTNYLAWSRSMQRALGAKCKLGFINGEIPVPDADDLNRTA 76
Query: 86 SQRRNTMVISWLTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFR 145
+R N +V SW+ SL SIAQ++++ D A+ +W+DL +RF++ D IRI L+ I + +
Sbjct: 77 WERCNHLVQSWILNSLSESIAQTVVFCDSASEVWQDLHERFSKTDRIRIATLRSSINILK 136
Query: 146 QGELSVTDYFTQLKIL*DELMNFRPIPSC 174
QG SV DYFT+LK L +E + PIP+C
Sbjct: 137 QGTKSVLDYFTELKGLWEEFSSHLPIPNC 165
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 122 bits (306), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 91/137 (66%)
Query: 38 VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
VL+SP GSNY +W+R+M A +KNKL F+DGS+ P D + +R N +V SW+
Sbjct: 24 VLISPPLDGSNYLAWSRSMIRAFGAKNKLKFIDGSMEIPDEDDLNRNAWERCNHLVQSWI 83
Query: 98 TRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQ 157
S+ P IAQ++++ + A + W DL++RF++ D+IRI L+ +I +QG SV +YFT+
Sbjct: 84 INSVSPQIAQTLVFHENAIDAWSDLKERFSKADIIRIASLRSKINNMKQGFKSVLEYFTE 143
Query: 158 LKIL*DELMNFRPIPSC 174
+K L +EL + RP+P C
Sbjct: 144 MKTLWEELNSHRPMPHC 160
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 90/137 (65%)
Query: 38 VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
V V+P TG NY +W R+MK AL +KNK F+DGS+ P + D +R N +++SW+
Sbjct: 30 VTVTPLLTGPNYLAWNRSMKRALGTKNKFVFIDGSVPIPPMDDLNRTAWERCNNLILSWI 89
Query: 98 TRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQ 157
S+ P IAQ+I++ + A ++W +LQ+RF++ D IR+ L+ I +QG+ SV DYFT
Sbjct: 90 INSVSPQIAQTIVFHEYAIDVWIELQERFSKVDRIRVASLRSSINNLKQGDKSVLDYFTS 149
Query: 158 LKIL*DELMNFRPIPSC 174
+K L +EL + RP+P C
Sbjct: 150 IKSLWEELNSHRPMPMC 166
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 89/135 (65%)
Query: 40 VSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTR 99
++P GSNY +W+R ++ +L +KNKLGF++GSI P D +R N +V SWL
Sbjct: 28 ITPKFNGSNYIAWSRTVERSLGTKNKLGFINGSIPMPDEDDLNRTAWERCNHLVQSWLIN 87
Query: 100 SL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLK 159
S+ SIAQ+I++ D A +W DL++RF++ D IRI +L+ I +QG V DYFT++K
Sbjct: 88 SVSESIAQTIVFCDSALEVWLDLKERFSKIDRIRIANLRSNINNLKQGSKFVLDYFTEIK 147
Query: 160 IL*DELMNFRPIPSC 174
L +EL + RPIP+C
Sbjct: 148 SLWEELSSHRPIPNC 162
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 90/135 (66%)
Query: 40 VSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTR 99
++P TGSNY +W+R ++ +L +KNKLGF++GSI P D +R N +V SWL
Sbjct: 27 ITPKLTGSNYIAWSRTVERSLGTKNKLGFINGSIPMPDEDDLNRAAWERCNHLVQSWLIN 86
Query: 100 SL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLK 159
S+ SIA ++++ D A +W DL++RF++ D IRI +L+ I +QG +V DYFT++K
Sbjct: 87 SVSDSIAPTVVFCDTALEVWLDLKERFSKIDRIRIANLRSSINNLKQGAKTVLDYFTEMK 146
Query: 160 IL*DELMNFRPIPSC 174
L +EL + RPIP+C
Sbjct: 147 SLWEELSSHRPIPNC 161
>IMGA|Medtr3g019580.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 4112343-4111299 H
EGN_Mt090430 20090702
Length = 334
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 80/119 (67%)
Query: 56 MKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKA 115
M+ ALA KNK FVDGSI P D +R N +V +W+ S+ PSIAQS+++I+ A
Sbjct: 3 MRRALAMKNKFKFVDGSIEVPDEHDLNRAAWERCNNLVHTWIINSISPSIAQSVVFIENA 62
Query: 116 TNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSC 174
++W DL+DRF +GD IR+ LQ+EI +QG VT+YFT+L+ L +EL +RP+P C
Sbjct: 63 MDMWNDLKDRFMRGDRIRVAQLQQEISNLKQGSKKVTEYFTELRGLWEELDQYRPMPHC 121
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 87/137 (63%)
Query: 38 VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
VLV+P G+NY +W+R+M A KNKL FVDG + P D +R N ++ SW+
Sbjct: 24 VLVTPLLDGTNYLAWSRSMIRAFVVKNKLKFVDGYMEIPDEDDLNRSAWERCNHLIQSWI 83
Query: 98 TRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQ 157
S+ P IAQ++++ + A + W DL++RF++ D IRI L+ +I +QG SV +YFT+
Sbjct: 84 INSVSPPIAQTLVFHENAVDGWSDLKERFSKADKIRIASLRSKINNMKQGSKSVLEYFTE 143
Query: 158 LKIL*DELMNFRPIPSC 174
+K L +EL + RP+P C
Sbjct: 144 MKTLWEELNSHRPMPHC 160
>IMGA|Medtr7g126870.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 29583401-29584363 H
EGN_Mt090430 20090702
Length = 302
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 85/136 (62%), Gaps = 18/136 (13%)
Query: 38 VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
VLV+P +G+NYHSW+R+M++AL SK+KL F++G++ P D R +M++SWL
Sbjct: 41 VLVTPLLSGNNYHSWSRSMQVALRSKHKLHFINGTLPRPCDDDHDSIAWDRCKSMIMSWL 100
Query: 98 TRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQ 157
+ + P I+QSILW+D A IW +L++RF QGE S++ Y+T+
Sbjct: 101 SNYVDPEISQSILWMDTALEIWNELKERFY------------------QGESSISSYYTK 142
Query: 158 LKIL*DELMNFRPIPS 173
+K L EL NFRPIP+
Sbjct: 143 MKKLWQELDNFRPIPT 158
>IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related
chr05_pseudomolecule_IMGAG_V3 33221869-33220686 H
EGN_Mt090430 20090702
Length = 369
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 39 LVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLT 98
LV+ G NY +W+R+MK AL +K KLGF+DG+IT P + + Y +R ++MV +W+
Sbjct: 55 LVAAVLNGENYRTWSRSMKTALQAKLKLGFIDGTITKPGMKTTNYVNWERADSMVTAWII 114
Query: 99 RSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQ-GELSVTDYFTQ 157
+ P + SI A +IW DL++RFAQ + RI L + + ++ ELSVT ++TQ
Sbjct: 115 NATDPVLHSSISHASTARDIWLDLEERFAQTNTPRIHQLWRNLCLMQEDDELSVTAFYTQ 174
Query: 158 LKIL*DELMNFRPIPSC 174
K L DEL +P+P C
Sbjct: 175 FKSLLDELSELQPLPEC 191
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 78/115 (67%)
Query: 61 ASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKATNIWK 120
A+KNKL F++G++ P D ++ +R N +V SWL S+ SIAQ+I++ D A ++W+
Sbjct: 30 AAKNKLSFINGTLPVPDTDDLNHNAWERCNHLVHSWLINSVSDSIAQTIVFHDNAFDVWE 89
Query: 121 DLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSCE 175
DL++RF++ D IRI L+ + RQG SV DYFT++K L +EL + RP+P+C
Sbjct: 90 DLKERFSKVDRIRIARLRSSLNTLRQGAKSVLDYFTEMKALWEELHSHRPLPNCH 144
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 81/119 (68%)
Query: 56 MKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKA 115
MK AL +KNKL F++G+I P D +R N ++ SW+ S+ SIAQ+I++ D A
Sbjct: 1 MKRALGAKNKLAFINGTIQQPEALDLNRAAWERCNHLIHSWIINSVSDSIAQTIVFHDYA 60
Query: 116 TNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSC 174
+++W+DL++RF++ D IRI L+ I +QG +V++YFT+++ L +EL + RP+P+C
Sbjct: 61 SDVWEDLKERFSKADRIRISTLRSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPNC 119
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 81/119 (68%)
Query: 56 MKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKA 115
MK AL +KNKL F++G+I P D +R N ++ SW+ S+ SIAQ+I++ D A
Sbjct: 1 MKRALGAKNKLAFINGTIQQPEALDLNRAAWERCNHLIHSWIINSVSDSIAQTIVFHDYA 60
Query: 116 TNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSC 174
+++W+DL++RF++ D IRI L+ I +QG +V++YFT+++ L +EL + RP+P+C
Sbjct: 61 SDVWEDLKERFSKADRIRISTLRSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPNC 119
>IMGA|Medtr7g045780.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 11034924-11036399 H
EGN_Mt090430 20090702
Length = 491
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 78/119 (65%)
Query: 56 MKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKA 115
MK AL +KNKL F++G I P D +R N ++ SW+ S+ SIAQ+I++ D A
Sbjct: 1 MKRALGAKNKLAFINGIIQQPEALDLNRAAWERCNHLIHSWIINSVSESIAQNIVFHDYA 60
Query: 116 TNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSC 174
++W+DL++RF++ D IRI L I +QG +V++YFT+++ L +EL + RP+P+C
Sbjct: 61 LDVWEDLKERFSKADRIRISTLCSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPNC 119
>IMGA|Medtr6g069740.1 Zinc finger, C4-type
chr06_pseudomolecule_IMGAG_V3 12973766-12974997 H
EGN_Mt090430 20090702
Length = 366
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 20/138 (14%)
Query: 37 LVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISW 96
V+V+P GSNY +W+R+M +KNKL F+DGS+ P D + +R N ++ SW
Sbjct: 23 FVVVAPPLDGSNYIAWSRSMIRDFGAKNKLKFIDGSMEIPDEDDLNRNAWERCNHLIQSW 82
Query: 97 LTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFT 156
+ S+ IAQ++++ + AT+ W DL++RFA+ ++V +YFT
Sbjct: 83 IINSISLQIAQTLVFHENATDAWSDLKERFAK--------------------VTVLEYFT 122
Query: 157 QLKIL*DELMNFRPIPSC 174
++K L +EL + RP+P C
Sbjct: 123 EIKTLWEELNSHRPMPHC 140
>IMGA|Medtr5g032700.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
13269922-13268996 E EGN_Mt090430 20090702
Length = 213
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 1/137 (0%)
Query: 38 VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
V V+ SNY +W+R+M+ AL +K KL F+DGSI P+I D +R ++ SW+
Sbjct: 29 VRVTSLLIESNYLAWSRSMQRALGAKTKLSFIDGSIRVPAIDDLTRGAWERCIHLIHSWI 88
Query: 98 TRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQ 157
S+ P I+Q+I++ + K+ + F + D IR+ L+ I +QG V DYFT+
Sbjct: 89 LNSVSPQISQTIIFHVHVIDFGKNSKKDF-KADSIRVSILRYAINNLKQGSKYVLDYFTK 147
Query: 158 LKIL*DELMNFRPIPSC 174
+K L +EL + RP P+C
Sbjct: 148 MKTLWEELNSQRPTPNC 164
>IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG_V3
33350941-33351963 H EGN_Mt090430 20090702
Length = 326
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 15/137 (10%)
Query: 39 LVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLT 98
LV+ G NY +W+R+MK AL +K KLGF+DG+IT P + + Y +R ++MV +W+
Sbjct: 47 LVAAVLNGENYRTWSRSMKTALRAKLKLGFIDGTITKPGMKTTNYVNWERADSMVTAWII 106
Query: 99 RSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQ-GELSVTDYFTQ 157
+ P + SI +IW DL++RFAQ + RI L + + ++ ELS+++
Sbjct: 107 NATDPVLHSSISHASTTRDIWLDLEERFAQTNAPRIHQLWRNLCLMQKDDELSLSE---- 162
Query: 158 LKIL*DELMNFRPIPSC 174
+P+P C
Sbjct: 163 ----------LQPLPEC 169
>IMGA|Medtr3g080970.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 19236298-19236945 H
EGN_Mt090430 20090702
Length = 200
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 31 PK*KSALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRN 90
P S V+V+P GSNY W R+M A KNK+ F+D S+ P+ D + +R N
Sbjct: 17 PSEGSNSVIVAPPLDGSNYLGWRRSMVRAFGMKNKMKFIDVSMEIPNEKDLNPNVRERCN 76
Query: 91 TMVISWLTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELS 150
++ SW+ S+ IAQ++ RF++ D IRI L+ +I +QG
Sbjct: 77 HLIQSWIINSVSTQIAQTL---------------RFSKIDRIRIATLRSKINNVKQGSKY 121
Query: 151 VTDYFTQLKIL*DELMNFRPIPSC 174
V DYFT++K L +EL + P+P C
Sbjct: 122 VLDYFTEMKTLWEELNSHHPMPHC 145
>IMGA|Medtr5g076530.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
28013549-28012814 E EGN_Mt090430 20090702
Length = 98
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 56 MKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKA 115
M+ ALA KNK FVDG I P D +R N +V +W+ S+ PSIAQS++ I+
Sbjct: 1 MRRALAMKNKFKFVDGFIPIPDADDLNCAAYERCNNLVHTWIINSVSPSIAQSVVSIENV 60
Query: 116 TNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVT 152
++W DL+DRF + IR+ LQ+E +QG ++
Sbjct: 61 VDMWNDLKDRFMRCGRIRVAQLQQENANLKQGNRKIS 97
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 38 VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
V ++P + SNYHSWAR+M+ AL +KNK FVDGSI P+ D + R N +V SW+
Sbjct: 41 VAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAWNRCNMLVHSWI 100
Query: 98 TRSL*PSIAQSILWIDKATNI 118
S+ SIAQSI+++ A ++
Sbjct: 101 MNSVEDSIAQSIVFLKNAIDL 121
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 21/114 (18%)
Query: 61 ASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKATNIWK 120
+KNKL FVDGSI P + D +R N+++ SW+ SL
Sbjct: 29 CAKNKLSFVDGSILIPPLDDLNRSVWERCNSLIHSWILNSL------------------- 69
Query: 121 DLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSC 174
Q+RF++ D +RI L I +QG V +YFT+LK L +EL + P+P C
Sbjct: 70 --QERFSKVDRVRISSLCTTINNLKQGTKFVLEYFTELKSLWEELNSHCPMPMC 121
>IMGA|Medtr3g040850.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 11245103-11243742 H
EGN_Mt090430 20090702
Length = 190
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 51/79 (64%)
Query: 90 NTMVISWLTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGEL 149
N ++ +W+ + S A SIL+ID +++W++L++R ++ D IR++ L+ +I +QG
Sbjct: 10 NNVIHTWIMNYVSDSTAHSILYIDIVSDVWRELKERLSKTDRIRVWKLKTKINNLKQGTN 69
Query: 150 SVTDYFTQLKIL*DELMNF 168
SV DY+ +L+ L + +N
Sbjct: 70 SVNDYYAELRSLWEVFLNL 88
>IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr03_pseudomolecule_IMGAG_V3
16240238-16240810 H EGN_Mt090430 20090702
Length = 147
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 43/119 (36%)
Query: 56 MKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKA 115
M+ ALA KNK F DGSI P D +
Sbjct: 3 MRRALAMKNKFKFFDGSIPIPVEDDLL--------------------------------- 29
Query: 116 TNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSC 174
F +GD IR+ +LQEEI +QG VT++FT L+ L +EL +RP+P C
Sbjct: 30 ----------FMRGDRIRVAELQEEIANLKQGSKKVTEFFTNLRGLWEELDQYRPMPQC 78
>IMGA|Medtr1g137300.1 TIR-NBS-LRR type disease resistance protein,
related chr01_pseudomolecule_IMGAG_V3 30413365-30412803
H EGN_Mt090430 20090702
Length = 152
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 34/129 (26%)
Query: 46 GSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSI 105
G NY + ++AM L SKNK F+DG+I P TD ++ +R N V+S + ++ I
Sbjct: 3 GPNYATQSKAMIGVLESKNKFVFLDGTIKKPDSTDPLFPTWKRCNDFVLSGVRATISSLI 62
Query: 106 AQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DEL 165
+SI I A+ +W++ T+LK L DEL
Sbjct: 63 QESIEDITDASVLWQE----------------------------------TKLKNLLDEL 88
Query: 166 MNFRPIPSC 174
FRPI C
Sbjct: 89 ALFRPISRC 97
>IMGA|Medtr7g029520.1 Integrase, catalytic region, putative
chr07_pseudomolecule_IMGAG_V3 7424834-7425131 H
EGN_Mt090430 20090702
Length = 74
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 22 ESIQSLFPPPK*KSALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSP 76
+S+ F P S+ V V+P G NYH+W+ M+ ALA KNK FVDG+I P
Sbjct: 12 QSLDPYFVHPSKNSSTVSVTPQLNGDNYHAWSMKMRRALAMKNKFKFVDGTIPIP 66
>IMGA|Medtr6g036540.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 8117470-8116658 H
EGN_Mt090430 20090702
Length = 270
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 46 GSNYHSWARAMKMALASKNKLGFVDGSITSPSIT-DSMYHPSQRRNTMVISWLTRSL*PS 104
GSNY+ W AM L + +V G P+I+ +N +I+W ++ PS
Sbjct: 16 GSNYNQWPEAMCGFLKGRRLWRYVTGDKKCPTISLAEKLEEWDSKNHQIITWCRKTSTPS 75
Query: 105 IAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFR-QGELSVTDYFTQLKIL*D 163
I + A +W L+ R+ D+ + L +++ + Q V ++ Q++I+ +
Sbjct: 76 IHLQFGRFENAKEVWDYLKQRYTISDLSHQYQLLKDLSNLKQQSGQPVYEFLAQMEIIWN 135
Query: 164 ELMNFRP 170
+L + P
Sbjct: 136 QLASCEP 142