Jatropha Genome Database

JcCA0040601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0040601.10 - phase: 2 /pseudo/partial
         (256 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099740.1 WD repeat domain phosphoinositide-interacti...   393   e-110
IMGA|Medtr7g130250.1 WD40-like chr07_pseudomolecule_IMGAG_V3 304...   379   e-106
IMGA|Medtr8g144620.1 AtATG18b, putative chr08_pseudomolecule_IMG...   127   7e-30
IMGA|Medtr8g144570.1 AtATG18b, putative chr08_pseudomolecule_IMG...   127   7e-30
IMGA|Medtr8g144620.2 WD40-like chr08_pseudomolecule_IMGAG_V3 349...   119   1e-27
IMGA|Medtr1g098850.1 WD40-like chr01_pseudomolecule_IMGAG_V3 200...    51   6e-07
IMGA|AC148471_18.1 Quinoprotein amine dehydrogenase, beta chain-...    47   9e-06

>IMGA|Medtr1g099740.1 WD repeat domain phosphoinositide-interacting
           protein 3, related chr01_pseudomolecule_IMGAG_V3
           20500084-20503478 E EGN_Mt090430 20090702
          Length = 385

 Score =  393 bits (1010), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/245 (78%), Positives = 217/245 (88%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           GGIG+V MLFRCNILA VGGGSDP+YP NKVMIWDDHQSRCIGELSFRSEV+ V+LRRDR
Sbjct: 76  GGIGLVHMLFRCNILAFVGGGSDPRYPANKVMIWDDHQSRCIGELSFRSEVKGVRLRRDR 135

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHYA 122
           I+VVL  KIFVYNFADLK+LHQIETIANP GLC VS  +G++V+ CPGLQKGQ+RVEHYA
Sbjct: 136 IVVVLAHKIFVYNFADLKVLHQIETIANPTGLCEVSHVSGTMVLACPGLQKGQIRVEHYA 195

Query: 123 SKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIY 182
           SKRTKFIMAHDSRIACFA+TQDG+LLATAS+KGTLVR+FNT DG+LLQEVRRGADRAEIY
Sbjct: 196 SKRTKFIMAHDSRIACFAITQDGRLLATASSKGTLVRVFNTLDGSLLQEVRRGADRAEIY 255

Query: 183 SLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPGTDKSGNTTDPNNAVTSPTSSLSFFKGV 242
           SLAFSS+AQWLAVSSDKGTVHVF+LK++ G  G D+S  T++ +    S  SSLSF +GV
Sbjct: 256 SLAFSSSAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHTTSESSPTSPSAASSLSFIRGV 315

Query: 243 LP*VF 247
           LP  F
Sbjct: 316 LPRYF 320


>IMGA|Medtr7g130250.1 WD40-like chr07_pseudomolecule_IMGAG_V3
           30420425-30423418 E EGN_Mt090430 20090702
          Length = 418

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/251 (76%), Positives = 213/251 (84%), Gaps = 4/251 (1%)

Query: 1   GGGGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRR 60
           GGGGI  VEMLFRCNILALVGGGS PQYPPNKVMIWDDHQ  CIGELSFR+ VR V+LRR
Sbjct: 103 GGGGIAHVEMLFRCNILALVGGGSHPQYPPNKVMIWDDHQGTCIGELSFRAAVRGVRLRR 162

Query: 61  DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEH 120
           DRIIVV+EQKIFVYNFADLKLLHQIETIANPKGLC+VS  + SLV+ CPGL KGQ+RVEH
Sbjct: 163 DRIIVVVEQKIFVYNFADLKLLHQIETIANPKGLCSVSHVSESLVLACPGLHKGQIRVEH 222

Query: 121 YASKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAE 180
           +A K+TKFI AHDSRIA FALT DGQL+ATAS KGTL+RI++T  GTLLQEVRRGA+ AE
Sbjct: 223 FALKKTKFISAHDSRIASFALTLDGQLIATASVKGTLIRIYDTDSGTLLQEVRRGANAAE 282

Query: 181 IYSLAFSSTAQWLAVSSDKGTVHVFSLKIN-PGSPGTDKS-GNTTDPNNAVTSPTSSLSF 238
           IYSLAFSSTAQWLAVSSDKGTVHVFSLK+N  G P  + S G+++  + A+   +SS SF
Sbjct: 283 IYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSSGVPENETSQGSSSSSDAAIVPSSSSRSF 342

Query: 239 --FKGVLP*VF 247
             FKGVLP  F
Sbjct: 343 IKFKGVLPKYF 353


>IMGA|Medtr8g144620.1 AtATG18b, putative
           chr08_pseudomolecule_IMGAG_V3 34990877-34983924 E
           EGN_Mt090430 20090702
          Length = 372

 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 115/210 (54%), Gaps = 5/210 (2%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           G   +VEMLF  ++LA+VG G  P   P ++ +++      + EL+F + + ++++ R R
Sbjct: 52  GAFSIVEMLFTSSLLAIVGAGDQPSLSPRRLCLFNTTTGAPLRELNFLTSILAIRMNRKR 111

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPG-LQKGQVRVEHY 121
           +IV+L+ K +VY    L +L   +T+ N KGLCA+S    +  M  P    KG   + + 
Sbjct: 112 LIVILQDKAYVYEINSLSILDTFDTVPNIKGLCALSPCLDACYMALPASTTKGSALLYNV 171

Query: 122 ASKRTKF-IMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAE 180
                   I AH S +A    + +G  +ATAS +GTLVR+   +D T     RRG+  + 
Sbjct: 172 MDCNLHCEIEAHRSPLAAMVFSSNGMYIATASEQGTLVRVHLVSDATKSYSFRRGSYSST 231

Query: 181 IYSLAFSSTAQW---LAVSSDKGTVHVFSL 207
           I+SL+F  + Q    LA +S  G++H+F+L
Sbjct: 232 IFSLSFGPSKQLPDILAATSSSGSIHLFTL 261


>IMGA|Medtr8g144570.1 AtATG18b, putative
           chr08_pseudomolecule_IMGAG_V3 34953278-34960231 E
           EGN_Mt090430 20090702
          Length = 372

 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 115/210 (54%), Gaps = 5/210 (2%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           G   +VEMLF  ++LA+VG G  P   P ++ +++      + EL+F + + ++++ R R
Sbjct: 52  GAFSIVEMLFTSSLLAIVGAGDQPSLSPRRLCLFNTTTGAPLRELNFLTSILAIRMNRKR 111

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPG-LQKGQVRVEHY 121
           +IV+L+ K +VY    L +L   +T+ N KGLCA+S    +  M  P    KG   + + 
Sbjct: 112 LIVILQDKAYVYEINSLSILDTFDTVPNIKGLCALSPCLDACYMALPASTTKGSALLYNV 171

Query: 122 ASKRTKF-IMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAE 180
                   I AH S +A    + +G  +ATAS +GTLVR+   +D T     RRG+  + 
Sbjct: 172 MDCNLHCEIEAHRSPLAAMVFSSNGMYIATASEQGTLVRVHLVSDATKSYSFRRGSYSST 231

Query: 181 IYSLAFSSTAQW---LAVSSDKGTVHVFSL 207
           I+SL+F  + Q    LA +S  G++H+F+L
Sbjct: 232 IFSLSFGPSKQLPDILAATSSSGSIHLFTL 261


>IMGA|Medtr8g144620.2 WD40-like chr08_pseudomolecule_IMGAG_V3
           34990877-34983924 E EGN_Mt090430 20090702
          Length = 314

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 5/203 (2%)

Query: 10  MLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ 69
           MLF  ++LA+VG G  P   P ++ +++      + EL+F + + ++++ R R+IV+L+ 
Sbjct: 1   MLFTSSLLAIVGAGDQPSLSPRRLCLFNTTTGAPLRELNFLTSILAIRMNRKRLIVILQD 60

Query: 70  KIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPG-LQKGQVRVEHYASKRTKF 128
           K +VY    L +L   +T+ N KGLCA+S    +  M  P    KG   + +        
Sbjct: 61  KAYVYEINSLSILDTFDTVPNIKGLCALSPCLDACYMALPASTTKGSALLYNVMDCNLHC 120

Query: 129 -IMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIYSLAFS 187
            I AH S +A    + +G  +ATAS +GTLVR+   +D T     RRG+  + I+SL+F 
Sbjct: 121 EIEAHRSPLAAMVFSSNGMYIATASEQGTLVRVHLVSDATKSYSFRRGSYSSTIFSLSFG 180

Query: 188 STAQW---LAVSSDKGTVHVFSL 207
            + Q    LA +S  G++H+F+L
Sbjct: 181 PSKQLPDILAATSSSGSIHLFTL 203


>IMGA|Medtr1g098850.1 WD40-like chr01_pseudomolecule_IMGAG_V3
           20074303-20066091 E EGN_Mt090430 20090702
          Length = 907

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 131 AHDSRIACFALTQDGQLLATASTKGTLVRIFN-----------------TADGTLLQEVR 173
           AH S I+     Q G LL TAS  G  + IF                  +     L ++ 
Sbjct: 368 AHTSPISALCFDQSGTLLVTASIHGNNINIFRIMPSYSKKGSGSQSNDWSCSHVHLYKLH 427

Query: 174 RGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSL 207
           RG   A I  + FS  +QW+AV S KGT H+F L
Sbjct: 428 RGMTSAVIQDICFSHYSQWVAVISSKGTCHIFVL 461


>IMGA|AC148471_18.1 Quinoprotein amine dehydrogenase, beta
           chain-like AC148471.15 33746-31612 H EGN_Mt090430
           20090702
          Length = 697

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 28/163 (17%)

Query: 48  SFRSEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVM 106
           SF   +R   LR   ++ VLE    +V   A             P G CAVS        
Sbjct: 208 SFDGTLRVWDLRSGGLLRVLEGHTAWVTAVA-----------VTPNGACAVS-------- 248

Query: 107 VCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATASTKGTLVRIFNTAD 165
              GL+ G +RV    + R K ++A H +R++   LT DG    +AS  GT VR+++   
Sbjct: 249 ---GLEDGNLRVWDLETGRLKGVLAGHAARVSAVELTPDGTRAVSASYDGT-VRVWDLTL 304

Query: 166 GTLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLK 208
           G  L      A    ++  A SS    L V+ D G++H   L+
Sbjct: 305 GLQLASF---ATEYALHCCAASSVGGVLIVAGDGGSMHFLRLE 344