Jatropha Genome Database
- JcCA0036251.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0036251.20 - phase: 2 /TE/pseudo/partial
(1336 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 192 9e-49
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 189 1e-47
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 177 3e-44
IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse transc... 163 6e-40
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 142 9e-34
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 112 2e-24
IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse transc... 109 7e-24
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 97 5e-20
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 96 1e-19
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 90 8e-18
IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 ... 90 9e-18
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 83 9e-16
IMGA|Medtr3g076160.1 gag-pol polyprotein, related chr03_pseudomo... 60 5e-09
IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse transcrip... 57 5e-08
IMGA|Medtr7g040700.1 hypothetical protein chr07_pseudomolecule_I... 57 6e-08
IMGA|Medtr5g048410.1 hypothetical protein chr05_pseudomolecule_I... 55 2e-07
IMGA|Medtr3g059230.1 gag-pol polyprotein, putative chr03_pseudom... 53 8e-07
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 192 bits (488), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 101/120 (84%)
Query: 1206 VHYPEWLANIVPVLKKDGRIRVCVDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCYSIMD 1265
V YPEW+ANIVPV KKDG++R+CVD+RDLNKASPKD+FPLPHIDVL+D+ A +S MD
Sbjct: 3 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 62
Query: 1266 GFSGYNQILMALVDKHKTAFTTDFGTFCYKVMPFGLKNAGATYQRMATILFHDMIHRGLE 1325
GFSGYNQI M+ D+ KT+F T +GTFCYKVMPFGL NAGATYQR T LFHDMIH+ +E
Sbjct: 63 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 122
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 100/120 (83%)
Query: 1206 VHYPEWLANIVPVLKKDGRIRVCVDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCYSIMD 1265
V YPEW+ANIVPV KKDG++R+CVD+RDLNKASPKD+FPLPHIDVL+D+ A +S MD
Sbjct: 3 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 62
Query: 1266 GFSGYNQILMALVDKHKTAFTTDFGTFCYKVMPFGLKNAGATYQRMATILFHDMIHRGLE 1325
GFSGYNQI M+ D+ KT+F T +GTFCYKVM FGL NAGATYQR T LFHDMIH+ +E
Sbjct: 63 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVE 122
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 1200 AGFLEVVH-YPEWLANIVPVLKKDGRIRVCVDYRDLNKASPKDDFPLPHIDVLIDSAAGM 1258
+GFL V + +ANIVPV KKDG++R+ VD+RDLNKASPKD+FPLPHIDVL+D+ A
Sbjct: 128 SGFLRFVAPSSDSVANIVPVPKKDGKVRMSVDFRDLNKASPKDNFPLPHIDVLVDNTAQS 187
Query: 1259 GCYSIMDGFSGYNQILMALVDKHKTAFTTDFGTFCYKVMPFGLKNAGATYQRMATILFHD 1318
+S MDGFSGYNQI M+ D+ KT+F T +GTFCYKVMPFGL NAGATYQR T LFHD
Sbjct: 188 KVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHD 247
Query: 1319 MIHRGLE 1325
MIH+ +E
Sbjct: 248 MIHKEVE 254
>IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
44106402-44105385 H EGN_Mt090430 20090702
Length = 308
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 115/186 (61%), Gaps = 1/186 (0%)
Query: 1117 EDP-KIIEIGSEFKPELRQDLQECIKRNSEVFAWSYADMPGIDRSIAEHFIPTDPNMKPV 1175
+DP K +IG + +R L C+K+N ++FAWS ADMP ID S+A H + DP + V
Sbjct: 123 DDPSKNFKIGKDLPELIRAQLVACLKQNPDLFAWSRADMPVIDPSVACHQLTVDPGISVV 182
Query: 1176 KQKRRQVRPEWQDKIKAEVQKQLDAGFLEVVHYPEWLANIVPVLKKDGRIRVCVDYRDLN 1235
Q+RR+ PE + V+ L+ F+ Y WL+N+V V K +G+ R+ VDY DLN
Sbjct: 183 AQRRRKQSPEKSVAAEKTVKDFLEEKFILEAKYTTWLSNVVLVKKSNGKWRMSVDYTDLN 242
Query: 1236 KASPKDDFPLPHIDVLIDSAAGMGCYSIMDGFSGYNQILMALVDKHKTAFTTDFGTFCYK 1295
+ PKD +PLP+ID L+D+++G S MD + GYNQI M DK KT F T+ G + Y
Sbjct: 243 RVCPKDAYPLPNIDKLVDNSSGFKLLSFMDAYFGYNQIPMVEGDKMKTTFMTESGNYYYN 302
Query: 1296 VMPFGL 1301
VMPFGL
Sbjct: 303 VMPFGL 308
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 95/149 (63%), Gaps = 7/149 (4%)
Query: 1177 QKRRQVRPEWQDKIKAEVQKQLDAGFLEVVHYPEWLANIVPVLKKDGRIRVCVDYRDLNK 1236
++RR+V E EV+K +DA F+ + YP WLAN V V K++G+ R+CVDY DLN
Sbjct: 3 EERRKVVDE-------EVKKLVDARFISEIKYPTWLANTVLVKKENGKWRMCVDYTDLNM 55
Query: 1237 ASPKDDFPLPHIDVLIDSAAGMGCYSIMDGFSGYNQILMALVDKHKTAFTTDFGTFCYKV 1296
PK +PLP+ID LID+A+G S MD +SGYNQI M +D KTAF T+ + Y+V
Sbjct: 56 VCPKYPYPLPNIDHLIDNASGFKTLSFMDAYSGYNQIRMDPLDAPKTAFMTNTKNYHYEV 115
Query: 1297 MPFGLKNAGATYQRMATILFHDMIHRGLE 1325
M FGLKNAGAT+QR F I R E
Sbjct: 116 MYFGLKNAGATFQRSMDTAFSQQIGRNRE 144
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
9673679-9667953 H EGN_Mt090430 20090702
Length = 1435
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 12/238 (5%)
Query: 1089 CHVHGIDYTTRIFDINAL-HNFAFNLSTIEDPKIIEIGSEFKPE-LRQDLQECIKRNSEV 1146
H H I R+ A+ F +L + P ++ S PE L L + + + S V
Sbjct: 506 AHFHHIK---RLASTKAIAETFYLHLLDAQPPNLM---STVIPENLDPALHDLLSKYSSV 559
Query: 1147 FAWSYADMPGIDRSIAEHFIPTDPNMKPVKQKRRQVRPEWQDKIKAEVQKQLDAGFLEVV 1206
F S A +P + +H IP + PVK K + + +I+ V + L G ++
Sbjct: 560 FQ-SPAGLPPCRQQ--DHAIPLLTDSNPVKVKPYRYAHSQKTQIEKMVLEMLQQGIIQPS 616
Query: 1207 HYPEWLANIVPVLKKDGRIRVCVDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCYSIMDG 1266
P + ++ V KKDG R C DYR LN + KD FP+P +D L+D G +S +D
Sbjct: 617 SSPF-SSPVLLVKKKDGSWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAAYFSKLDL 675
Query: 1267 FSGYNQILMALVDKHKTAFTTDFGTFCYKVMPFGLKNAGATYQRMATILFHDMIHRGL 1324
SGY+QIL+ D+HKTAF T G + + VMPFGL NA A++Q + +F +++ R +
Sbjct: 676 LSGYHQILVKSEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQNLMNKVFCNLLRRSV 733
>IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13291757-13291422 H EGN_Mt090430 20090702
Length = 111
Score = 109 bits (273), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/99 (49%), Positives = 65/99 (65%)
Query: 1227 VCVDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCYSIMDGFSGYNQILMALVDKHKTAFT 1286
+C DY +LNK PKD +PLP ID L+ + + S MD +SGYN+I M L D+ KTAF
Sbjct: 1 MCTDYTNLNKVCPKDAYPLPSIDQLVHNTSRYDLLSFMDAYSGYNKIRMHLEDEEKTAFM 60
Query: 1287 TDFGTFCYKVMPFGLKNAGATYQRMATILFHDMIHRGLE 1325
TD +CYK MPFGL+N GAT+QR+ +F I + +E
Sbjct: 61 TDKANYCYKGMPFGLRNTGATFQRLVDKVFKSEIGKTIE 99
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcriptase)
AC234026.1 2154-4412 H EGN_Mt090430 20090702
Length = 705
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Query: 1171 NMKPVKQKRRQVRPEWQDKIKAEVQKQLDAGFLEVVHYPEWLANIVPVL---KKDGRIRV 1227
N++P K Q +++I+ +V + L AG + P A PV+ KKD R+
Sbjct: 154 NVRPYKYPHHQ-----KEEIEKQVAELLAAGVIR----PSMSAYSSPVILVKKKDKSWRM 204
Query: 1228 CVDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCYSIMDGFSGYNQILMALVDKHKTAFTT 1287
CVDYR LNKA D +P+P +D L+D G +S +D SGY+QI + D HKTAF T
Sbjct: 205 CVDYRALNKARIPDKYPIPVVDELLDELYGATIFSKIDLKSGYHQIRVHENDIHKTAFRT 264
Query: 1288 DFGTFCYKVMPFGLKNAGATYQRMATILFHDMIHR 1322
G + Y VMPFGL NA AT+Q +F + +
Sbjct: 265 HNGHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRK 299
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Query: 1163 EHFIPTDPNMKPVKQKRRQVRPEWQDKIKAEVQKQLDAGFLEVVHYPEWLANIVPVLKKD 1222
+H IP PN PV K + ++ + + L G + P + + ++ V KKD
Sbjct: 561 DHHIPLLPNTPPVNVKPYRYPHSQKEAMTTIIHDMLHDGIIVPSTSP-YSSPVLLVRKKD 619
Query: 1223 GRIRVCVDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCYSIMDGFSGYNQILMALVDKHK 1282
G R CVDYR LN + D FP+P ID L D +S D SGY+QI + D HK
Sbjct: 620 GSWRFCVDYRALNAVTICDRFPIPTIDELFDELGSASLFSKTDLRSGYHQIRVVPEDTHK 679
Query: 1283 TAFTTDFGTFCYKVMPFGLKNAGATYQ 1309
T F T G + + VMPFGL NA +T+Q
Sbjct: 680 TTFRTFDGHYEFLVMPFGLSNAPSTFQ 706
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 89.7 bits (221), Expect = 8e-18, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 60/97 (61%)
Query: 1229 VDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCYSIMDGFSGYNQILMALVDKHKTAFTTD 1288
V+Y DL++ PKD +PL +ID L+D+++G +S MD FS YNQI + D+ KT F +
Sbjct: 3 VEYSDLSRVCPKDTYPLINIDKLVDNSSGYKLFSFMDFFSMYNQIPLDPKDEDKTTFMVE 62
Query: 1289 FGTFCYKVMPFGLKNAGATYQRMATILFHDMIHRGLE 1325
G Y VM F LKN G TYQRM +F D I L+
Sbjct: 63 AGNHFYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLK 99
>IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 H
EGN_Mt090430 20090702
Length = 72
Score = 89.7 bits (221), Expect = 9e-18, Method: Composition-based stats.
Identities = 41/71 (57%), Positives = 52/71 (73%)
Query: 1237 ASPKDDFPLPHIDVLIDSAAGMGCYSIMDGFSGYNQILMALVDKHKTAFTTDFGTFCYKV 1296
A KD +PLP+ID L+D+++G +S MD +S YNQILMA DK KTAF T+ G + Y V
Sbjct: 2 ACRKDAYPLPNIDKLVDNSSGYKLFSFMDTYSRYNQILMAEGDKKKTAFMTESGNYYYNV 61
Query: 1297 MPFGLKNAGAT 1307
MPFGL+N GAT
Sbjct: 62 MPFGLRNMGAT 72
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 1213 ANIVPVLKKDGRIRVCVDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCYSIMDGFSGYNQ 1272
++++ V KK G R CVDYR LN + KD FPLP ID L+D +S +D G++Q
Sbjct: 16 SHVLLVKKKVGSWRCCVDYRALN--AIKDRFPLPTIDELLDDLGKASWFSKLDLQQGFHQ 73
Query: 1273 ILMALVDKHKTAFTTDFGTFCYKVMPFGLKNAGATYQRMATILFHDMIHR 1322
I MA D KTAF T G + KVMPFGL NA +T++ LF + +
Sbjct: 74 IRMAPEDIPKTAFRTHHGHYECKVMPFGLCNAPSTFKSTMNNLFQPFLRK 123
>IMGA|Medtr3g076160.1 gag-pol polyprotein, related
chr03_pseudomolecule_IMGAG_V3 17551397-17550407 H
EGN_Mt090430 20090702
Length = 220
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 1121 IIEIGSEFKPELRQDLQECIKRNSEVFAWSYADMPGIDRSIAEHFIPTDPNMKPVKQKRR 1180
+ +IG+ P + DL EC++ N+E+FA S M GID S+A H + +P KP+ QKRR
Sbjct: 147 MFKIGANLTPTVENDLIECLRANAELFACSSEKMLGIDPSVACHKLNVNPEAKPMSQKRR 206
Query: 1181 QVRPE 1185
PE
Sbjct: 207 HQSPE 211
>IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein AC233082.3 19216-16757 H
EGN_Mt090430 20090702
Length = 819
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 1163 EHFIPTDPNMKPVKQKRRQVRPEWQDKIKAEVQKQLDAGFLEVVHYPEWLANIVPVLKKD 1222
+H IP PN P+ K + +D + ++ L G + P + + ++ V KKD
Sbjct: 720 DHHIPLLPNTPPINVKPYRYPHSQKDAMTTLIRDMLQNGTIMPSTSP-FSSPVLLVRKKD 778
Query: 1223 GRIRVCVDYRDLNKASPKDDFPLPHIDVLIDSAAGMGCY 1261
G R CVDYR LN + KD FP+P ID L+D +
Sbjct: 779 GTWRFCVDYRALNAVTVKDRFPIPTIDELLDELGAATIF 817
>IMGA|Medtr7g040700.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 10057424-10057978 H
EGN_Mt090430 20090702
Length = 184
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 686 VMVDNGSALCVCSLKMLSKFKIEESELEPSNMVVKAYDNTMRNAKGTFKAKISTGTVESW 745
V+VD G + + L K +++L P N+ + Y+ R++ G + ++ TV
Sbjct: 90 VLVDRGVGVNLMPQSFLKKIGKFDTDLNPHNIALLNYEGKARHSLGALQVNLTVVTVTMP 149
Query: 746 VDVIVLDILANYALLLGRPWLHPLGAIPSTLHRKV 780
V+ AN+ LLLG+ W+H +G PS++H+++
Sbjct: 150 TLFKVVPSKANFNLLLGKEWIHGIGGFPSSMHQRI 184
>IMGA|Medtr5g048410.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 20435366-20437381 H
EGN_Mt090430 20090702
Length = 468
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 686 VMVDNGSALCVCSLKMLSKFKIEESELEPSNMVVKAYDNTMRNAKGTFKAKISTGTVESW 745
V VD + + + S +L + +++L+ N+V+ Y+ + G + ++ G V
Sbjct: 357 VFVDGSATVNLMSQSLLKRIGKCDADLKHHNIVLSNYEGKTGFSLGALQVSLTVGFVTRP 416
Query: 746 VDVIVLDILANYALLLGRPWLHPLGAIPSTLHRKVKIPWGTD 787
IV+ AN+ LLLGR +H +G IPS++H+KV I W D
Sbjct: 417 TLFIVVPSKANFNLLLGRECIHGIGVIPSSMHQKV-IIWRDD 457
>IMGA|Medtr3g059230.1 gag-pol polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 13292042-13291812 H
EGN_Mt090430 20090702
Length = 76
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 1132 LRQDLQECIKRNSEVFAWSYADMPGIDRSIAEHFIPTDPNMKPVKQKRRQVRPEWQDKIK 1191
+ ++++ +++N +VFAWS DMPGID + H + DP + V+Q++R++ E Q ++
Sbjct: 1 MEEEMKCTLRKNLDVFAWSDKDMPGIDPNFICHRLAIDPMARVVQQRKRKMGMEKQKAVQ 60
Query: 1192 AEVQKQLDAGFLEVV 1206
E K ++A F+ V
Sbjct: 61 EETHKLVEAKFIREV 75