Jatropha Genome Database

JcCA0036251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0036251.10 + phase: 1 /pseudo/partial
         (168 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g112530.1 TB2/DP1 and HVA22 related protein chr08_pse...   147   2e-36
IMGA|Medtr5g040510.1 TB2/DP1 and HVA22 related protein chr05_pse...   117   3e-27
IMGA|Medtr4g121370.1 TB2/DP1 and HVA22 related protein chr04_pse...    63   7e-11
IMGA|Medtr5g099090.1 TB2/DP1 and HVA22 related protein chr05_pse...    62   2e-10
IMGA|Medtr4g121400.1 TB2/DP1 and HVA22 related protein; Zinc fin...    61   3e-10
IMGA|Medtr3g150830.1 TB2/DP1 and HVA22 related protein chr03_pse...    47   6e-06

>IMGA|Medtr8g112530.1 TB2/DP1 and HVA22 related protein
           chr08_pseudomolecule_IMGAG_V3 25283646-25281645 E
           EGN_Mt090430 20090702
          Length = 173

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/94 (73%), Positives = 78/94 (82%), Gaps = 3/94 (3%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           IPIW YAKLI+TCWLV+PYF+GAAYVYEH+VRP   NP QT+NIWYVPRKKDVF+K DDI
Sbjct: 75  IPIWPYAKLILTCWLVLPYFTGAAYVYEHYVRPFLANP-QTINIWYVPRKKDVFTKQDDI 133

Query: 122 LTAAERYIEENGTEAFEKLIHRVSDEALTLGFSH 155
           +TAAE+YI+ENGTEAFE LIHR        G SH
Sbjct: 134 ITAAEKYIKENGTEAFENLIHRADKSK--WGSSH 165


>IMGA|Medtr5g040510.1 TB2/DP1 and HVA22 related protein
           chr05_pseudomolecule_IMGAG_V3 17288440-17284860 E
           EGN_Mt090430 20090702
          Length = 182

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 75/95 (78%), Gaps = 9/95 (9%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPK--------QTVNIWYVPRKKD 113
           +PIW YAKLI++CWLV+P+F+GAA+VY+ ++RP ++NP+         T  +WYVPR K+
Sbjct: 72  LPIWPYAKLILSCWLVLPHFNGAAHVYKCYLRPFYMNPQLPQMPLMPGTSQMWYVPR-KN 130

Query: 114 VFSKPDDILTAAERYIEENGTEAFEKLIHRVSDEA 148
           +FSK DD+L+AAERY++ENGTEAFE+LI +   EA
Sbjct: 131 IFSKQDDVLSAAERYMQENGTEAFERLITKTDREA 165


>IMGA|Medtr4g121370.1 TB2/DP1 and HVA22 related protein
           chr04_pseudomolecule_IMGAG_V3 28440138-28442532 E
           EGN_Mt090430 20090702
          Length = 174

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 5/79 (6%)

Query: 64  IWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRK-KDVFSKPDDIL 122
           +W Y KL++   L+IP F  A+YVY + +RP+    K  +  W +    +  F + DD L
Sbjct: 72  LWPYIKLMIIFCLIIPDFGRASYVYNNLIRPM----KLQIVSWRLNNYWRKCFVEKDDFL 127

Query: 123 TAAERYIEENGTEAFEKLI 141
             AERY++ENGTEA EKLI
Sbjct: 128 MHAERYMQENGTEALEKLI 146


>IMGA|Medtr5g099090.1 TB2/DP1 and HVA22 related protein
           chr05_pseudomolecule_IMGAG_V3 39602902-39604230 F
           EGN_Mt090430 20090702
          Length = 157

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 63  PIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPR--KKDVFSKPDD 120
           PIW Y KL+   WLV+P F+GAAY+YE++ R  +V        +  P   KK +     D
Sbjct: 68  PIWPYMKLVFCIWLVLPMFNGAAYIYENYART-YVKKFGNYGSYNYPEEYKKVLHMMTFD 126

Query: 121 ILTAAERYIEENGTEAFEKLIHRVSDEA 148
              A ERYI+  G +AFE++I     EA
Sbjct: 127 ARKAVERYIDRFGPDAFERVIRAAEKEA 154


>IMGA|Medtr4g121400.1 TB2/DP1 and HVA22 related protein; Zinc
           finger, C2H2-type chr04_pseudomolecule_IMGAG_V3
           28447000-28449345 H EGN_Mt090430 20090702
          Length = 318

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 64  IWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDILT 123
           +W Y KL++  WL+IP F    YVY + +R       Q V        +D F++ D+ L 
Sbjct: 63  LWPYIKLMIVLWLIIPDFGRTTYVYNNLIRSTI---PQIVTWRLNSYWRDCFAEKDNFLL 119

Query: 124 AAERYIEENGTEAFEKLI 141
            AERY++ENGTE  +KLI
Sbjct: 120 HAERYMKENGTETLQKLI 137


>IMGA|Medtr3g150830.1 TB2/DP1 and HVA22 related protein
          chr03_pseudomolecule_IMGAG_V3 39807506-39808807 F
          EGN_Mt090430 20090702
          Length = 154

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 24/32 (75%)

Query: 62 IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVR 93
          IPIW   KL++  WLV+P F GAAY+YE FVR
Sbjct: 67 IPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 98