Jatropha Genome Database

JcCA0031791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0031791.10 - phase: 1 /TE/partial
         (361 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g076160.1 gag-pol polyprotein, related chr03_pseudomo...    50   1e-06
IMGA|Medtr3g059230.1 gag-pol polyprotein, putative chr03_pseudom...    48   1e-05

>IMGA|Medtr3g076160.1 gag-pol polyprotein, related
           chr03_pseudomolecule_IMGAG_V3 17551397-17550407 H
           EGN_Mt090430 20090702
          Length = 220

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 261 ELKEVNLETTEEPRPIF-LSANLSSKKEMEYVELLQEHRDDFALSYKEMSGLDPKVAVHN 319
           E K V L+  + P  +F + ANL+   E + +E L+ + + FA S ++M G+DP VA H 
Sbjct: 134 EFKSVQLD--DNPTTMFKIGANLTPTVENDLIECLRANAELFACSSEKMLGIDPSVACHK 191

Query: 320 LAIKPEVKPVKXAQKGFRPE 339
           L + PE KP+   ++   PE
Sbjct: 192 LNVNPEAKPMSQKRRHQSPE 211


>IMGA|Medtr3g059230.1 gag-pol polyprotein, putative
           chr03_pseudomolecule_IMGAG_V3 13292042-13291812 H
           EGN_Mt090430 20090702
          Length = 76

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%)

Query: 294 LQEHRDDFALSYKEMSGLDPKVAVHNLAIKPEVKPVKXAQKGFRPELIPQIEAKVNKLID 353
           L+++ D FA S K+M G+DP    H LAI P  + V+  ++    E    ++ + +KL++
Sbjct: 9   LRKNLDVFAWSDKDMPGIDPNFICHRLAIDPMARVVQQRKRKMGMEKQKAVQEETHKLVE 68

Query: 354 ASFIREVK 361
           A FIREVK
Sbjct: 69  AKFIREVK 76