Jatropha Genome Database

JcCA0030161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0030161.10 + phase: 0 /partial
         (167 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g097000.1 Terpenoid synthase chr04_pseudomolecule_IMG...   291   1e-79

>IMGA|Medtr4g097000.1 Terpenoid synthase
           chr04_pseudomolecule_IMGAG_V3 20594715-20601627 E
           EGN_Mt090430 20090702
          Length = 407

 Score =  291 bits (744), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 151/163 (92%)

Query: 1   FHASELEDLAPDVLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVDKLEDL 60
           F+AS  EDLA D LSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYV KLEDL
Sbjct: 184 FYASGKEDLATDKLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVSKLEDL 243

Query: 61  KYEENSLKAVRCLNDMVTNALMHVDDCLKYMSALRDPAIFRFCVIPQIMAIGTLALCYNN 120
           KYEENS+KAV+CLNDMVTNAL+H DDCL+YMSALRD + FRFC IPQ+MAIGTLA+CYNN
Sbjct: 244 KYEENSVKAVQCLNDMVTNALLHADDCLQYMSALRDSSNFRFCAIPQVMAIGTLAMCYNN 303

Query: 121 IEVFRGVVKMRRGLTAKVIYQTKSMADVYGAFFDFSCMLKSKV 163
           I VFRGVVKMRRGLTAKVI +TK+MADVYGAFFDF+ +L+SKV
Sbjct: 304 IGVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFASVLESKV 346