Jatropha Genome Database

JcCA0029581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029581.10 - phase: 1 /TE/partial
         (240 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG...    64   6e-11
IMGA|Medtr3g058900.1 Zinc finger, CCHC-type chr03_pseudomolecule...    57   1e-08

>IMGA|Medtr8g074430.1 integrase, related
           chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
           EGN_Mt090430 20090702
          Length = 272

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 13  PIFVGENYQLWAVKMKAYLQAYDLREHVETEKEIPPLPSNLT--MVQIKNHSE------- 63
           P F G+ Y +W  +M+ ++Q  D       E   P  P+++     + K+ +E       
Sbjct: 19  PFFDGKKYYIWKHRMQIFVQGTDFDAWKAIEHG-PFFPTHIVNGFTKPKSKTEWTDDDKK 77

Query: 64  EXXXXXXXXXCLHSSVSDIIFTSIMTCETTKEIWDSLKNEYQGNEQTKLMQVLNLKREFE 123
           +          +  ++ +  F+++M CET +E+W++L+N ++G  + K+ ++  L  E+E
Sbjct: 78  KVHPDSRAKHLISCALCNDEFSNVMYCETAREMWNTLQNIHEGTGEVKMARIGYLTGEYE 137

Query: 124 MQKMKTSGGVKXYVNNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFESKISSL 178
              MK    +         +VN +   G++ P   +V K+L  L +K+  K+ ++
Sbjct: 138 RFCMKPGENIHDMQMRFYDVVNHLASLGKKIPNEDLVSKVLRCLSKKWRHKVRAI 192


>IMGA|Medtr3g058900.1 Zinc finger, CCHC-type
           chr03_pseudomolecule_IMGAG_V3 13082612-13083121 H
           EGN_Mt090430 20090702
          Length = 169

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 127 MKTSGGVKXYVNNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFESKISSLEDTKNLSE 186
           MK    +K Y +++++I  ++++ GE   ++ V+EKIL +LP +F+  + ++E+TK+L+E
Sbjct: 1   MKKEDKIKDYFSSVLTITKQMKICGETLFDKSVMEKILRTLPSQFDHLVITIEETKDLNE 60

Query: 187 ISVGELTNALQAVEQRRAFR-EDNTIEAALVAK 218
             + EL  AL+A E +   R E+   E +L+A+
Sbjct: 61  AKIEELQGALEAHEMKVTSRKEEKDEEQSLLAR 93