Jatropha Genome Database

JcCA0029471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029471.10 + phase: 1 /partial
         (110 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g143290.1 Protein of unknown function DUF266, plant c...   144   1e-35
IMGA|Medtr4g143460.1 Protein of unknown function DUF266, plant c...   105   4e-24
IMGA|Medtr8g129570.1 Protein of unknown function DUF266, plant c...    49   5e-07
IMGA|Medtr2g042340.1 Protein of unknown function DUF266, plant c...    45   8e-06

>IMGA|Medtr4g143290.1 Protein of unknown function DUF266, plant
           chr04_pseudomolecule_IMGAG_V3 35844707-35850449 E
           EGN_Mt090430 20090702
          Length = 363

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 75/93 (80%)

Query: 12  QEGLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETE 71
           Q+ LE E+TRR            +D ERRGWHPVTYKFSDATP LIK IK+IDNIYYETE
Sbjct: 264 QKDLEKELTRRSVTHTAWDISNSRDRERRGWHPVTYKFSDATPMLIKFIKEIDNIYYETE 323

Query: 72  YRKEWCSSKGKPSTCFLFARKFTRPAALRLLNM 104
           YR+EWC+SKGKPSTCFLFARKFTR AALRLLNM
Sbjct: 324 YRREWCTSKGKPSTCFLFARKFTRTAALRLLNM 356


>IMGA|Medtr4g143460.1 Protein of unknown function DUF266, plant
           chr04_pseudomolecule_IMGAG_V3 35920661-35925111 E
           EGN_Mt090430 20090702
          Length = 279

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 60/93 (64%), Gaps = 17/93 (18%)

Query: 12  QEGLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETE 71
           Q+ LE E+TRR            +D ERRGWHP                 +IDNIYYETE
Sbjct: 197 QKDLEKELTRRSVTHTAWDISNSRDRERRGWHP-----------------EIDNIYYETE 239

Query: 72  YRKEWCSSKGKPSTCFLFARKFTRPAALRLLNM 104
           YR+EWC+SKGKPSTCFLFARKFTR AALRLLNM
Sbjct: 240 YRREWCTSKGKPSTCFLFARKFTRTAALRLLNM 272


>IMGA|Medtr8g129570.1 Protein of unknown function DUF266, plant
           chr08_pseudomolecule_IMGAG_V3 30674694-30667744 E
           EGN_Mt090430 20090702
          Length = 396

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 36  DPERRGWHPVTYKFSDATPTLIKNIKDID-NIYYETEYRKE---W-CSSKGKPSTCFLFA 90
           D   R WHP +Y+  D T  L+KNI  +D +++  ++ +KE   W C   G    C+LFA
Sbjct: 314 DWSERKWHPKSYRDHDVTYELLKNITSVDVSVHVTSDEKKEVQSWPCLWNGIQKPCYLFA 373

Query: 91  RKFTRPAALRLLNM 104
           RKFT     +LL++
Sbjct: 374 RKFTPETLDKLLHL 387


>IMGA|Medtr2g042340.1 Protein of unknown function DUF266, plant
           chr02_pseudomolecule_IMGAG_V3 11854409-11848974 E
           EGN_Mt090430 20090702
          Length = 393

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 36  DPERRGWHPVTYKFSDATPTLIKNIKDID-NIYYETEYRKE---W-CSSKGKPSTCFLFA 90
           D   + WHP +Y+  D T  L+KNI  ID +++  ++ +KE   W C   G    C+LFA
Sbjct: 313 DWSEQKWHPKSYRAQDITYELLKNITSIDESVHVTSDEKKEVQIWPCLWNGIQKPCYLFA 372

Query: 91  RKFTRPAALRLLNM 104
           RKF+      LL +
Sbjct: 373 RKFSPDTEDNLLKL 386