Jatropha Genome Database

JcCA0029141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029141.10 - phase: 0 /partial
         (635 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g032130.1 Starch synthase catalytic region chr05_pseu...   248   8e-66
IMGA|Medtr6g012910.1 Glycosyl transferase, group 1 chr06_pseudom...    56   5e-08

>IMGA|Medtr5g032130.1 Starch synthase catalytic region
           chr05_pseudomolecule_IMGAG_V3 12928209-12924338 E
           EGN_Mt090430 20090702
          Length = 430

 Score =  248 bits (632), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 200/373 (53%), Gaps = 19/373 (5%)

Query: 246 LVLQQNQELRKKVDKLEESLEEANVYKLSSEKLQQSNELMQQKIKLLEERLQRSDEEIGS 305
           L + +N+++ K +    ++++  N+++L  E  Q    L  Q++  +EE L +  +E   
Sbjct: 45  LEVNKNEDISKSLSDDGQNVKHDNIWQLFREAQQNILYLNNQRLGAIEE-LNKIKKE--- 100

Query: 306 YVQVYQESVQEFQDTLNTLKEQSKKKALDQPVDDMPWEFWSRLLLMIDGWVLEEKLSKEN 365
                ++S+ +    L  +K++S  K              S LLL ID  VL   +S   
Sbjct: 101 -----KQSILDKIKKLEAVKQESADKL----------SICSELLLRIDSMVLGNVISLAE 145

Query: 366 AKLLRDMVWKRDRRVCDAYLECREKNDREAVSTFLKLTSSPASSGLHVIHIAAEMAPVAK 425
           A   R +V      V D +     K D E V      +     +G H+IHI  EM P+  
Sbjct: 146 ASDFRSLVLHHKVSVADVFNVISHKRDSELVGELRHFSDQSKKNGFHIIHICTEMTPLVS 205

Query: 426 XXXXXXXXXXXXKALQKRGHLVEIILPKYDCMQYDGIGNLRALDVVVESYFDGKLYKNKI 485
                       +ALQ++GHL E+ILPKY C+  D +  LR ++V V SYF+G+L+ N+I
Sbjct: 206 RGSVASYVTGIARALQRKGHLAEVILPKYACLDLDEVQGLREVNVEVYSYFNGQLHGNRI 265

Query: 486 WVGTIEGLPVYFIEPHHPNKFFWRGQFYGEHDDFKRFSFFSRAALELLLQAGKKPDIIHC 545
           W G + G+ V  IEP   + FF R   YG  DDF+RFS+F RA+L+ +++ GK+PDI+H 
Sbjct: 266 WTGVVYGVGVTLIEPLDHSSFFSREMIYGYPDDFERFSYFCRASLDYIVKCGKQPDILHL 325

Query: 546 HDWQTAFVAPLYWDIYAPKGLNSARICFTCHNFEYQGTAPASELVSCGLDVQELNRPDRM 605
           H+W+TA VAPL+WD++  KGL   RI  T HNF  QGT    +L  CGLD   L+ PDR+
Sbjct: 326 HNWETAIVAPLFWDVFVNKGLGGTRILLTIHNFNSQGTEQPDKLALCGLDPSSLHCPDRL 385

Query: 606 QDNSAHDRINPVK 618
           QDN+    +N +K
Sbjct: 386 QDNTNTQLVNILK 398


>IMGA|Medtr6g012910.1 Glycosyl transferase, group 1
           chr06_pseudomolecule_IMGAG_V3 2547326-2554167 E
           EGN_Mt090430 20090702
          Length = 758

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 97/239 (40%), Gaps = 26/239 (10%)

Query: 411 LHVIHIAAEMAPVAKXXXXXXXXXXXXKALQKRGHLVEIILPKYDCMQYDGIGNL-RALD 469
           +++I +AAE AP +K            KAL +RGH V ++ P Y        GN   A D
Sbjct: 267 MNIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY--------GNYAEAQD 318

Query: 470 VVVESYFD--GKLYKNKIWVGTIEGLPVYFIEPHHPNKFFWRGQFYGEH--DDFKRFSFF 525
           + V   +   G+  +   +   I+G+   FI+   P         YG +  D  +R + F
Sbjct: 319 IGVRKRYKVAGQDMEVTYFQTYIDGVDFVFID--SPIFQHLESNIYGGNRVDILRRMALF 376

Query: 526 SRAALELLLQA-------GKKPDIIHCHDWQTAFVAPLYWD-IYAPKGL-NSARICFTCH 576
            +AA+E+           G    +   +DW TA + P+Y    Y   GL N  R     H
Sbjct: 377 CKAAVEVPWHVPCGGVCYGDGNLVFIANDWHTALL-PVYLKAYYRDHGLMNYTRSVLVIH 435

Query: 577 NFEYQGTAPASELVSCGLDVQELNRPDRMQDNSAHDRINPVKGAVVFSNIVTTVSPTYA 635
           N  +QG  P  +     L    ++   RM D    +  N     +  ++ + TVS  YA
Sbjct: 436 NIAHQGRGPLDDFNIVDLPGNYIDL-FRMYDPVGGEHFNIFAAGLKTADRIVTVSHGYA 493