Jatropha Genome Database

JcCA0029051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029051.30 + phase: 0 /partial
         (354 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g079590.1 hypothetical protein chr03_pseudomolecule_I...    65   5e-11
IMGA|Medtr5g010390.1 AT-rich interaction region; Transcription f...    51   7e-07
IMGA|Medtr4g165650.1 SNF2-related; Chromo; Helicase, C-terminal;...    50   2e-06

>IMGA|Medtr3g079590.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 18480668-18479489 E
           EGN_Mt090430 20090702
          Length = 145

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 36/38 (94%), Gaps = 2/38 (5%)

Query: 213 YYKKVVYDGGEFEVGDDVYVKRREDASSDDEDPEVEEC 250
           YYKKVVYDGGEFEVG+DVYVK REDA+S +EDPE+EEC
Sbjct: 49  YYKKVVYDGGEFEVGNDVYVK-REDATS-EEDPELEEC 84


>IMGA|Medtr5g010390.1 AT-rich interaction region; Transcription
           factor jumonji, jmjC; Transcription factor jumonji,
           JmjN; Zinc finger, C5HC2-type; Zinc finger,
           FYVE/PHD-type; chr05_pseudomolecule_IMGAG_V3
           2537448-2547205 E EGN_Mt090430 20090702
          Length = 886

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 226 VGDDVYVK--RREDASSDDE--DPEVEECRVCFKAGKAVMLECDDCLGGFHLKCLKPPLK 281
           V DD+ +K  + +D    DE  D   E+C+        VML CD C  G+H+ CL PPLK
Sbjct: 220 VVDDMKIKDLKVKDRKVKDESRDQICEQCKSGLHG--EVMLLCDRCDKGWHIYCLSPPLK 277

Query: 282 EVPEGDWICGFC 293
           ++P G+W C  C
Sbjct: 278 QIPLGNWYCFNC 289


>IMGA|Medtr4g165650.1 SNF2-related; Chromo; Helicase, C-terminal;
           Zinc finger, FYVE/PHD-type; ; ;
           chr04_pseudomolecule_IMGAG_V3 41778652-41770478 E
           EGN_Mt090430 20090702
          Length = 1372

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 249 ECRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFC 293
           EC +C   G   +L CD C   +HL+CL PPLK +P G W C  C
Sbjct: 37  ECVICDLGGN--LLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 79