Jatropha Genome Database

JcCA0028741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028741.20 - phase: 0 /TE/pseudo/partial
         (638 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g022790.1 Putative AC9 transposase, chr07_pseudomolec...    66   5e-11
IMGA|AC235671_8.1 HAT dimerisation AC235671.2 34285-36383 E EGN_...    65   1e-10
IMGA|Medtr4g140840.1 HAT dimerisation chr04_pseudomolecule_IMGAG...    64   2e-10
IMGA|Medtr4g140830.1 HAT dimerisation chr04_pseudomolecule_IMGAG...    61   1e-09
IMGA|Medtr5g012620.1 Zinc finger, BED-type predicted; Zinc finge...    61   2e-09
IMGA|Medtr4g140790.1 HAT dimerisation chr04_pseudomolecule_IMGAG...    60   4e-09
IMGA|Medtr4g140860.1 HAT dimerisation chr04_pseudomolecule_IMGAG...    59   7e-09
IMGA|Medtr8g015840.1 Zinc finger, BED-type predicted chr08_pseud...    58   2e-08
IMGA|AC235022_13.1 Zinc finger, BED-type predicted; HAT dimerisa...    57   3e-08
IMGA|Medtr2g126790.1 Zinc finger, BED-type predicted; HAT dimeri...    57   3e-08
IMGA|AC235022_16.1 Zinc finger, BED-type predicted AC235022.1 10...    55   1e-07

>IMGA|Medtr7g022790.1 Putative AC9 transposase,
           chr07_pseudomolecule_IMGAG_V3 5793191-5792242 H
           EGN_Mt090430 20090702
          Length = 298

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 7/150 (4%)

Query: 52  NLSLFKYSEKIQKEELAKMISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTII 111
           NLS  KY  + Q+E +A  + M    FS  E+ GF  +  K  N S + + R T+K   +
Sbjct: 13  NLSA-KYDHERQREAIAHWVMMHEHPFSIVEEEGFL-FMMKCSNFSYEEISRKTLKNECV 70

Query: 112 SLYNKGKKELELLFSQLKIRVSIC--YDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGF 169
           ++Y   +K+L+   S L+I   IC   D+W    Q   YM +T H+ID DW +QKR++GF
Sbjct: 71  AVYESERKKLK---STLRIVNKICLTTDLWKSQNQKIEYMVLTGHFIDADWVLQKRVLGF 127

Query: 170 RVFDDKYTANNIYRVIVSILDEYRLTKKNF 199
                     +I   I   L E+ +  K F
Sbjct: 128 VHVPPPRHGVDIADAIFKCLKEWGIENKIF 157


>IMGA|AC235671_8.1 HAT dimerisation AC235671.2 34285-36383 E
           EGN_Mt090430 20090702
          Length = 580

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 3/132 (2%)

Query: 68  AKMISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQ 127
           A  I    L F F E  G   Y  + LNP+    PRN I+  +  LY K K +L+   + 
Sbjct: 24  ASTILAHDLPFHFFELEGMRKY-SEFLNPNIPIPPRNVIEAYVSHLYTKEKPKLKQQLTT 82

Query: 128 LKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVS 187
           +  R+S+ +D+W  +    +Y+ +T H++D +WK+  ++I FR+     T+  I   +V 
Sbjct: 83  IPNRISLSFDLWESN-TTETYICLTAHFVDANWKLNSKVINFRLVYPP-TSGEICERMVE 140

Query: 188 ILDEYRLTKKNF 199
           +L+++ + KK F
Sbjct: 141 LLNDWGIEKKIF 152


>IMGA|Medtr4g140840.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
           34632644-34634683 E EGN_Mt090430 20090702
          Length = 575

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 68  AKMISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQ 127
           A MI      F F E+ G +N+  K LNP+A   P N IK  +  LY K K +L+   + 
Sbjct: 31  ASMILSNDFPFDFFEREGMSNF-MKVLNPNAVMPPINVIKAYVSDLYTKAKLKLKQDLAT 89

Query: 128 LKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVS 187
           +  R+S+  D+W +     +Y+ +T H+ D +WK++ +++ F   D   T   +   +V 
Sbjct: 90  IPNRISLTVDLW-ESCTTETYICLTAHFADANWKLKSKVLTFCTVD--PTGAEMCERMVE 146

Query: 188 ILDEYRLTKKNF 199
            L ++ + KK F
Sbjct: 147 FLSDWGIEKKIF 158


>IMGA|Medtr4g140830.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
           34628699-34631682 H EGN_Mt090430 20090702
          Length = 575

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%)

Query: 68  AKMISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQ 127
           A MI    L F+F E      Y +  LNP+A   P N I+  +  LY K K +L+   + 
Sbjct: 19  ASMILAHDLPFNFLELEVMRKYTE-FLNPNAVIPPTNVIEAYVSHLYTKEKLKLKQELAS 77

Query: 128 LKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVS 187
           +  R+S+ +D+W  +    +Y+ +T H++D +WK+  +++ FR+      A  I   ++ 
Sbjct: 78  IPNRISLTFDLWESN-TTETYICLTAHFVDANWKLNSKVLNFRLVYPPIAA-EISERMIE 135

Query: 188 ILDEYRLTKKNF 199
           +L+++ + KK F
Sbjct: 136 LLNDWGIEKKIF 147


>IMGA|Medtr5g012620.1 Zinc finger, BED-type predicted; Zinc finger,
           C2H2-type chr05_pseudomolecule_IMGAG_V3 3672857-3679359
           E EGN_Mt090430 20090702
          Length = 408

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 2/143 (1%)

Query: 57  KYSEKIQKEELAKMISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNK 116
           KY  + Q+E  A  + M    FS  E+ GF  +  K  N S +++ R T+K   +++Y  
Sbjct: 199 KYDHERQREATAHWVMMHEHPFSIVEEEGFL-FMMKCSNFSYEKISRKTLKNDCVAVYES 257

Query: 117 GKKELELLFSQLKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKY 176
            +K+L+     +  ++ +  D+W    Q   YM +T H+ID DW +QKR++ F       
Sbjct: 258 ERKKLKSTLRTIN-KICLTTDLWKSQNQKIEYMVLTGHFIDADWVLQKRVLSFVHVPPPR 316

Query: 177 TANNIYRVIVSILDEYRLTKKNF 199
              +I   I   + E+ +  K F
Sbjct: 317 RGVDIADAIFKCIKEWGIENKIF 339


>IMGA|Medtr4g140790.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
           34617776-34619868 E EGN_Mt090430 20090702
          Length = 577

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 68  AKMISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQ 127
           A MI      F F E+ G  N+  K LNP+    P + I+  +  LY K K +L+   + 
Sbjct: 46  ASMILSNDFPFEFFEREGMRNF-MKVLNPNIVLPPVDVIEAYVSDLYMKEKLKLKQELAT 104

Query: 128 LKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVS 187
           +  R+S+ +D+W  +    +Y+ +T H++D DWK+  +++ F V     T   +   +V 
Sbjct: 105 IPNRISLTFDLWESN-TAETYICLTAHFVDADWKLNSKVLNFCVV--LPTVAEMCERMVE 161

Query: 188 ILDEYRLTKKNF 199
            L ++ + KK F
Sbjct: 162 FLSDWGIEKKIF 173


>IMGA|Medtr4g140860.1 HAT dimerisation chr04_pseudomolecule_IMGAG_V3
           34637604-34639452 H EGN_Mt090430 20090702
          Length = 446

 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 70  MISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLK 129
           MI    L F F E  G   Y +  LN +A   P N I+  +  LY K K +L+   + + 
Sbjct: 1   MILALDLPFDFLEHEGMRRYTE-TLNRNAVIPPTNVIEAYVTHLYMKEKSKLKQQLATIP 59

Query: 130 IRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGF-RVFDDKYTANNIYRVIVSI 188
            RVS+ +D+W     M  Y+ +T H++D +WK+  +++ F  V+ D  T   +   ++ +
Sbjct: 60  NRVSLTFDLWESCTTM-PYICLTAHFVDANWKVNSKVLNFCSVYPD--TGGEMCERMIEL 116

Query: 189 LDEYRLTKKNF 199
           L+++ + KK F
Sbjct: 117 LNDWGIEKKIF 127


>IMGA|Medtr8g015840.1 Zinc finger, BED-type predicted
           chr08_pseudomolecule_IMGAG_V3 2886085-2884782 H
           EGN_Mt090430 20090702
          Length = 389

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 8/152 (5%)

Query: 19  AGGYGSFXKHLETKHPTKIGVDRSQQQISGNASNLSLFKYSEKIQKEELAKM-ISMEHLS 77
            GG  S  KH E       G  RS      +     + K+ ++  +  L KM I+ME + 
Sbjct: 69  GGGTTSMGKHTERCD----GYKRSMMSEDEHMDFPLVPKFDQEAIRRALVKMFINME-IP 123

Query: 78  FSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLKIRVSICYD 137
           F   E   F+ +   A +P  K + R T+ R ++ L++  + +L++L ++   RV +  D
Sbjct: 124 FRKVEHESFHEFMSLA-SPRFKLISRTTLARDVLKLWDTERLQLKILLAEHCQRVCLTTD 182

Query: 138 VWSDHWQMHSYMGITCHWIDDDWKIQKRIIGF 169
           +W+   +M SYM +T H+ID++W++ K+I+ F
Sbjct: 183 MWTSCQKM-SYMCVTAHFIDNNWRLHKKILNF 213


>IMGA|AC235022_13.1 Zinc finger, BED-type predicted; HAT
           dimerisation AC235022.1 87203-82116 E EGN_Mt090430
           20090702
          Length = 1025

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 12/138 (8%)

Query: 41  RSQQQISGNASNLSLFKY----------SEKIQKEELAKMISMEHLSFSFGEKVGFNNYC 90
           RS+   +GNA+N    +Y           +   + E+A+MI M        E  GF  + 
Sbjct: 450 RSRGSGAGNANNTPKRRYRTAGTPYIIIDQDRCRHEIARMIIMHDYPLHMVEHPGFVAFV 509

Query: 91  QKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLKIRVSICYDVWSDHWQMHSYMG 150
           Q  L P    V  NTI+   ++ Y   K+ L   F +L  RV +  D+W+   Q   Y+ 
Sbjct: 510 QN-LQPQFNMVTFNTIQGDCVATYLTEKQCLTKYFDELPGRVGLTLDMWTSS-QSVGYVF 567

Query: 151 ITCHWIDDDWKIQKRIIG 168
           IT H++D DWK+Q+R++ 
Sbjct: 568 ITGHFVDSDWKLQRRLLN 585


>IMGA|Medtr2g126790.1 Zinc finger, BED-type predicted; HAT
           dimerisation chr02_pseudomolecule_IMGAG_V3
           30782400-30785624 E EGN_Mt090430 20090702
          Length = 696

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 5/191 (2%)

Query: 10  CGKSYKFKQA-GGYGSFXKHLETKHPTKIGVDRSQQQISGNASNLSLFKYSEKIQKEELA 68
           C K+ + K +  G     K    K  +K GVD+ ++Q        S+  YS++   +++A
Sbjct: 94  CSKNPQAKHSKTGVDPHKKRARAKS-SKTGVDQHKRQDRVKPYFTSI-SYSQERCNDKIA 151

Query: 69  KMISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQL 128
           KMI +        E  GFN++  +AL P    +  NT++   I++Y + K+ L  L  ++
Sbjct: 152 KMIILHDYPLHIVEHKGFNDFA-RALQPQFNPLSLNTVQGDCIAIYLREKQNLLNLVDRI 210

Query: 129 KIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVSI 188
             RV++  D+W+ + Q   Y+ +  H+ID DW     I+            ++ + IV+ 
Sbjct: 211 PGRVNLTLDLWTSN-QTTGYVFLRGHFIDGDWNFHHPILNVFAVPYPDLDGSLNQTIVTC 269

Query: 189 LDEYRLTKKNF 199
           L  + L  + F
Sbjct: 270 LKSWHLKGRLF 280


>IMGA|AC235022_16.1 Zinc finger, BED-type predicted AC235022.1
           101864-97385 E EGN_Mt090430 20090702
          Length = 974

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 12/138 (8%)

Query: 41  RSQQQISGNASNLSLFKY----------SEKIQKEELAKMISMEHLSFSFGEKVGFNNYC 90
           RS+   + NASN    +Y           +   + E+A+MI M        E  GF  + 
Sbjct: 532 RSRGSGASNASNTPKRRYRTASTPYIIFDQDRCRHEIARMIIMHDYPLHMVEHPGFVAFV 591

Query: 91  QKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLKIRVSICYDVWSDHWQMHSYMG 150
            + L P    V  NTI+   ++ Y   K+ L   F +L  R  +  D+W+   Q   Y+ 
Sbjct: 592 -RNLQPQFNMVTFNTIQGDCVATYLTEKQNLSKYFDELPGRFGLTLDMWTSS-QSVGYVF 649

Query: 151 ITCHWIDDDWKIQKRIIG 168
           IT H++D DWK+QKRI+ 
Sbjct: 650 ITGHFVDSDWKLQKRILN 667