Jatropha Genome Database

JcCA0028741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028741.10 - phase: 0 
         (193 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g121150.1 Chorismate synthase chr01_pseudomolecule_IM...   262   7e-71
IMGA|Medtr1g121030.1 Chorismate synthase chr01_pseudomolecule_IM...    53   1e-07

>IMGA|Medtr1g121150.1 Chorismate synthase
           chr01_pseudomolecule_IMGAG_V3 26335762-26338001 E
           EGN_Mt090430 20090702
          Length = 187

 Score =  262 bits (670), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 138/154 (89%)

Query: 29  GLGSPVFDKLEAEFAKALLSLPASKGFEVGSGFAGTFLTGSEHNDEFYLDEHGKIRTRRN 88
           GLGSPVFDKLEAE AKA +SLPA+KGF+ GSGFAGTFLTGSEHNDEFY+D++GK+RTR N
Sbjct: 24  GLGSPVFDKLEAELAKAAMSLPATKGFQFGSGFAGTFLTGSEHNDEFYIDQNGKMRTRTN 83

Query: 89  RSGGIQEGISNGEIIKMRVAFKPTATISKKQNTVTRDRMEIELIACGRHDPCVVPRAVPM 148
           RSGGIQ GISNGEII MR+ FKPT+TI+KKQ+TVTRD+ E ELIA GRHDPCVVPRAVPM
Sbjct: 84  RSGGIQGGISNGEIINMRIGFKPTSTITKKQSTVTRDKKETELIARGRHDPCVVPRAVPM 143

Query: 149 VEAMVALVLVDQLMAHHAQCGLFPINPMLQEPLN 182
           VEAMVALVLVDQLMA +AQC LFP N  LQE L+
Sbjct: 144 VEAMVALVLVDQLMAQYAQCNLFPANFDLQESLS 177


>IMGA|Medtr1g121030.1 Chorismate synthase
          chr01_pseudomolecule_IMGAG_V3 26294740-26295360 H
          EGN_Mt090430 20090702
          Length = 123

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 26/27 (96%)

Query: 1  MIAAVDAIRVKGDSIGGVVTCIVRNAP 27
          MI+A+DA+RVKGDS+GGVVTCIVRN P
Sbjct: 34 MISAIDAVRVKGDSVGGVVTCIVRNCP 60