Jatropha Genome Database

JcCA0028681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028681.10 - phase: 0 /partial
         (468 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g146810.1 Alpha-isopropylmalate/homocitrate synthase;...   685   0.0  

>IMGA|Medtr1g146810.1 Alpha-isopropylmalate/homocitrate synthase;
           chr01_pseudomolecule_IMGAG_V3 32578362-32586181 F
           EGN_Mt090430 20090702
          Length = 598

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/389 (81%), Positives = 358/389 (92%), Gaps = 1/389 (0%)

Query: 80  YIPNHIPDPFYVRVFDTTLRDGEQSPGATLTSKEKLDIARHLSKLGVDIIEAGFPAASND 139
           YIPNHIPDP YVR+FDTTLRDGEQSPGA++TSKEKLDIAR L+KLGVDIIEAGFPAAS D
Sbjct: 62  YIPNHIPDPSYVRIFDTTLRDGEQSPGASMTSKEKLDIARQLAKLGVDIIEAGFPAASTD 121

Query: 140 DFEAVKTIAKEVGNAVDDEGYVPVICGLSRCNEKDIKTAWEAVKYAKRPRIHTFIATSEI 199
           DFEAVK IA EVGNAVDD GYVPVICGLSRCNE DI+TAW AVK+AKRPRIHTFIATS I
Sbjct: 122 DFEAVKMIANEVGNAVDDNGYVPVICGLSRCNENDIQTAWNAVKHAKRPRIHTFIATSAI 181

Query: 200 HMQYKLRKSKEEVVEIATNMVKFARSLGCDDVEFSPEDAGRSDREFLYHILGEVIKAGAT 259
           HM++KLR SK++V++ A  MV FARSLGC DVEFSPEDAGRSDREFLY ILGEVIKAGAT
Sbjct: 182 HMEFKLRMSKQQVIDKARTMVAFARSLGCQDVEFSPEDAGRSDREFLYQILGEVIKAGAT 241

Query: 260 TLNIPDTVGITLPSEFGQLIADIRANTPGIENVIISTHCQNDLGLSTANTLAGTYAGARQ 319
           TLNIPDTVGIT+PSEFG+LIADI+ANTPG+ENVIISTHCQNDLGLSTANT+ G  AGARQ
Sbjct: 242 TLNIPDTVGITMPSEFGKLIADIKANTPGVENVIISTHCQNDLGLSTANTIEGARAGARQ 301

Query: 320 VEVTVNGIGERAGNASLEEVVMAIKCRGEHVLGGLYTGINSKHITMASKMVEEYTGLHVQ 379
           +EVT+NGIGERAGNASLEEVVMA+KC G H+   L+TGIN++HI + S+MVEEY+GL +Q
Sbjct: 302 LEVTINGIGERAGNASLEEVVMALKC-GGHIFNNLFTGINTRHIYLTSRMVEEYSGLQLQ 360

Query: 380 PHKAIVGANAFAHESGIHQDGMLKHKGTYEIMSPEDIGLERANDAGIVLGKLSGRHALKD 439
           PHKA+VGANAFAHESGIHQDGMLKHKGTYEI+SPEDIGLER+N+AGIVLGKLSGRHA++ 
Sbjct: 361 PHKALVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSNEAGIVLGKLSGRHAMRK 420

Query: 440 RLKELGYELSDEQLGNIFWRFKSVAENKK 468
           RL+ELGYEL D+Q+ ++FWRFK+VAE KK
Sbjct: 421 RLEELGYELKDDQVESLFWRFKAVAEQKK 449