Jatropha Genome Database
- JcCA0028391.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0028391.20 + phase: 1 /TE
(1339 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 436 e-122
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 422 e-118
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 420 e-117
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 317 2e-86
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 279 5e-75
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 240 4e-63
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 235 9e-62
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 214 2e-55
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 164 3e-40
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 163 5e-40
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 160 5e-39
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 157 4e-38
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 150 3e-36
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 149 1e-35
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 146 5e-35
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 134 4e-31
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 131 3e-30
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 126 7e-29
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 125 1e-28
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 114 5e-25
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 102 2e-21
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 96 2e-19
IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule... 89 1e-17
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 88 2e-17
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 87 5e-17
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 82 2e-15
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 78 2e-14
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 77 4e-14
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 77 7e-14
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 71 5e-12
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 69 1e-11
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 63 1e-09
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 60 1e-08
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 59 1e-08
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 59 2e-08
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 57 5e-08
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 57 7e-08
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 57 7e-08
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 55 2e-07
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 53 8e-07
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 53 1e-06
IMGA|Medtr8g096240.1 hypothetical protein chr08_pseudomolecule_I... 51 3e-06
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust.
Identities = 283/940 (30%), Positives = 467/940 (49%), Gaps = 109/940 (11%)
Query: 435 AVLWHRRLGHVSKSRIERLVSDGILDTLDYTGLDSCIECIKGKQTKQKRLGAI-RSSNVL 493
A LWH RLGH+S R+ ++ + ++ + D C C KQ ++ +S
Sbjct: 492 AALWHFRLGHLSNQRMIKM--SHLYPSIVHNNRDVCDICHFSKQKHLPFSSSLSHASTNF 549
Query: 494 ELIHTDICGPFHIAARNGQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEVENQLG 553
EL+H DI GP I++ +G RYF++ +DD+S + ++ L+ KSE K++ + Q
Sbjct: 550 ELLHFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHVKNFILMIRTQFH 609
Query: 554 KKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRT 613
K VRSD G E+ F GI+ Q + TP NG ER+++
Sbjct: 610 VTPKYVRSDNGPEFL-------------LNDFYSSHGIIHQKSCVETPQQNGRVERKHQH 656
Query: 614 LMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVW 672
++++ R+++ S LP S W A+ +L+NR+P+ + ++PY + + P ++
Sbjct: 657 ILNVGRALLYQSKLPPSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHKLPDIQLF--- 713
Query: 673 GCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYNFYNPTSRTFFETRIATFFEDV--- 729
++KL + S F+GY +GY+ ++ ++R F +R F E++
Sbjct: 714 ------------KSKLQPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHENILPY 761
Query: 730 ------------DFGGRNKERNIVFEEEPSKDDSVL-----------IPFVVSDSVQTPV 766
F E + PS + L + + S + +
Sbjct: 762 TFTTSSTTPSWDYFSPSTTETSHSPNNTPSTPSASLPHTQSSSPSVPVSHLPRHSTRNKI 821
Query: 767 APVAIQDPIQDNXXXXXXXXXXXXXXXXXXMPLRRS-TRERRSAIPDDYIVFLQEHEDTV 825
+P +QD + ++ P+ + + S+ Y++ L H
Sbjct: 822 SPSYLQDYVCNSINSTT-------------YPISHYLSHNKLSSHHSSYVLSLHTH---- 864
Query: 826 DMIDDDPVSFYHAMXSSDSHK-WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKT 884
++P ++ A + H+ W +AM E ++++ W+ V LP KPIGC+W+FK
Sbjct: 865 ----NEPKTYAEA----NKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKI 916
Query: 885 KRDSQDNVERYKARLVAKGFTQKEGIDYIETVSLVSSKDSFRTIMALVANLDLELHQMDV 944
KR + ++ERYKARLVAKG+TQ EG+DY +T S V+ + R I+AL + LHQ+DV
Sbjct: 917 KRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDV 976
Query: 945 KTAFLNGDIDETIYMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGF 1004
AFL+GD+ E +YM P + + VCKL KS+YGLKQASR+WY K +++ +
Sbjct: 977 NNAFLHGDLQENVYMTLPPG-ISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQY 1035
Query: 1005 EANAVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFV 1064
++ ++ K +G+ + L++YVDDI+LA + K L F++KDLG+ F
Sbjct: 1036 TQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFF 1095
Query: 1065 LGIQIHRDSSRGILGLSQKSYIDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQ 1124
LG+++ S GI L QK Y +L G S+P TP L++
Sbjct: 1096 LGLEV-AHSQLGI-SLCQKKYCLDLLADSGTIGSKPASTP------------SDPSLKLH 1141
Query: 1125 EMQKVPYASV------VGSLMYVQVCTRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYL 1178
+ +PY + +G L+Y+ TRPDI++I L ++LS P + AA RV+RYL
Sbjct: 1142 KDGALPYEDIPSYRRLIGRLLYLNT-TRPDITYITQQLSQFLSAPTHTHHSAALRVLRYL 1200
Query: 1179 QRTKGHMLTYRRSDQLEIIGYTDSDFAGCQDSRKSTSGYIFLLAGGAISWKSVKQTLVAT 1238
+ G L + R+ L++ GY+D+D+AGC D+R+S SG F L ISW++ KQ V+
Sbjct: 1201 KNCPGKGLFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSR 1260
Query: 1239 STMEAEFVASYEASNQAIWLRNLVTGLRVVGGIKRPLKLYCDSRSAVLFXXXXXXXXXXK 1298
S+ EAE+ A A+ + WL L+ L V K P+ L+CD++SA+ K
Sbjct: 1261 SSSEAEYRALASATCELQWLIYLLQDLHVT-CTKLPV-LFCDNQSALHIAANPVFHERTK 1318
Query: 1299 HIEIKFLAVKERVQSGQISLEHIGTNSMIADPLTKAVIPK 1338
H+EI V+E++ SG + L + + +AD TK++ P+
Sbjct: 1319 HLEIDCHIVREKLHSGILKLLPVSSKEQVADFFTKSLHPQ 1358
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 264/815 (32%), Positives = 414/815 (50%), Gaps = 74/815 (9%)
Query: 557 KSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMD 616
K++R D G E+ K F GI+ + TP NG ER+++ +++
Sbjct: 459 KTIRIDNGPEFMLKD-------------FYASHGIIHHKSCVETPQQNGRVERKHQHILN 505
Query: 617 MVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCP 675
+VR+++ S LP + W A+ +L+NR+ + + ++PY + + PSL V+GC
Sbjct: 506 VVRALLFQSKLPPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCL 565
Query: 676 AEARPYKPNETKLDSKTISSYFVGYSERSRGYNFYNPTSRTFFETRIATFFEDV------ 729
A + + TKL S+ S F+GY +GY ++ TSR F +R +F E +
Sbjct: 566 CYASTLQNHRTKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHETILPYHKN 625
Query: 730 ------DFGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVAIQDPIQDNXXXXX 783
D+ ++ ++ P+ + V IP V+ D + +
Sbjct: 626 PSSTTADWNYYPSSQSYSHDQSPNVNHQVHIPAVIDDILPS----------------THV 669
Query: 784 XXXXXXXXXXXXXMPLRRSTRERRSAIP-DDYI-------VFLQEHEDTVDMIDDDPVSF 835
+ RRS R R + + DY+ + H + I + SF
Sbjct: 670 LPPSPPYDSPPIHVSPRRSNRVRTAPLHLQDYVCNSVHSTTYPLSHYINYNNISTNHASF 729
Query: 836 YHAMXS----------SDSHKWIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTK 885
++ + S W +AM E +++ WD+V LP KPIGC+WI+K K
Sbjct: 730 ISSLQTTPEPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVK 789
Query: 886 RDSQDNVERYKARLVAKGFTQKEGIDYIETVSLVSSKDSFRTIMALVANLDLELHQMDVK 945
++ ++ERYKARLVAKG+TQ EG+DY ET S V+ + R ++AL + + LHQ+DV
Sbjct: 790 HNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVN 849
Query: 946 TAFLNGDIDETIYMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFE 1005
AFL+G++ E +YM+ P I P H VCKLKKS+YGLKQASRQWY K V++ +
Sbjct: 850 NAFLHGELQEDVYMILPPGINIAKP-HQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYI 908
Query: 1006 ANAVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVL 1065
+ ++ ++ K S F L++YVDDI+LA + K L F++KDLG+ + L
Sbjct: 909 QASSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFL 968
Query: 1066 GIQIHRDSSRGILGLSQKSYIDKVLKRFGMQNSRPLDTPIAKGDKF-SNQQCPKSELEIQ 1124
GI++ S GI L Q+ Y +L G S+P+ TP K + P ++
Sbjct: 969 GIEV-AHSKLGI-SLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIP-- 1024
Query: 1125 EMQKVPYASVVGSLMYVQVCTRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTKGH 1184
Y +VG L+Y+ TRPDI+FI L ++LSNP + + AA R +RYL+ G
Sbjct: 1025 -----AYRRLVGRLLYLN-NTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGK 1078
Query: 1185 MLTYRRSDQLEIIGYTDSDFAGCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAE 1244
L + R+ L + G++D+D+AGC D+RKS +G F L ISW++ KQT V+ S+ EAE
Sbjct: 1079 GLFFPRNSSLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAE 1138
Query: 1245 FVASYEASNQAIWLRNLVTGLRVVGGIKRPLKLYCDSRSAVLFXXXXXXXXXXKHIEIKF 1304
+ A A+ + WL L+ L + +P LYCD++SA+ KH+EI
Sbjct: 1139 YRALASATCEIQWLLYLLNDLHIT--CSKPPVLYCDNQSALHIAANPVFHERTKHLEIDC 1196
Query: 1305 LAVKERVQSGQISLEHIGTNSMIADPLTKAVIPKV 1339
V+E++Q+G + L + + IAD TKA++PK
Sbjct: 1197 HIVREKLQAGVLKLLPVSSQDQIADFFTKALLPKT 1231
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 324/1092 (29%), Positives = 518/1092 (47%), Gaps = 126/1092 (11%)
Query: 287 TSAPKNTYW-VDSGATAHISVSLQGCLN-YR-KPTDGERYIYVGNGDLVEVEAIGHFRLC 343
+S K +W +DSGA HI + + YR KP + + + NG +V V G +
Sbjct: 379 SSTNKPPFWLIDSGANEHICCDITFFSSFYRIKPVN----VSLPNGTIVLVHYAG--TVS 432
Query: 344 LSTGYFLDLIDTFVIPSFRRNLISVSFLDKS---GFHCSFGDSVFTLSMNSKVLGTGCLN 400
++ ++L+ + P+F NLISV+ L +S FH S + + K++G
Sbjct: 433 FNSKFYLNHV--LYSPNFLLNLISVAKLCESLTCFFHFSLDKCLIQDQQSLKMIGLA--K 488
Query: 401 ECDNLYM---------LDIDTSYHESLHVTTRGTKRKL-NIDNSAVLWHRRLGHVSKSRI 450
+ D LY L++ +S + +V + K+ S LWH RLGH+SK R+
Sbjct: 489 QMDGLYKFYPSSSSCNLELFSSPTKYCNVVLPSSCNKIPTFVPSDTLWHFRLGHLSKQRL 548
Query: 451 ERLVSDGILDTLDYTGLDSCIECIKGKQTKQKRLGAIRSSNVLELIHTDICGPFHIAARN 510
+ L +L Y + I + + +L H A++
Sbjct: 549 QTL-------SLLYPSIK------------------IDNKAICDLCH---------FAKH 574
Query: 511 GQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGK 570
F S +D+S + ++ L+ K+E K++ ++N K +R+D G E+
Sbjct: 575 KHLPFTS--NDHSRFLWIILLKTKAEVSTHVKNFITMIKNHFHTTPKFIRTDNGPEFM-- 630
Query: 571 YDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPES 630
+ GI+ Q + TP NG ER+++ ++++ R+++ S LP +
Sbjct: 631 -----------LSTLYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPA 679
Query: 631 LWGEALKTTAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLD 689
W A++ +L+NR+P+ + ++PY + + P V+GC A + + TKL
Sbjct: 680 YWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTLQSHTTKLK 739
Query: 690 SKTISSYFVGYSERSRGYNFYNPTSRTFFETRIATFFEDVDFGGRNKERNIVFEEEPSKD 749
+ S F+GY +G+ Y+ SR F +R TF E+ F P
Sbjct: 740 HRARKSIFIGYQSGYKGFTLYDLHSREIFISRHVTFHEN-------------FLPYPHTS 786
Query: 750 DSVLIPF-VVSDSVQTPVAPVAIQDPIQDNXXXXXXXXXXXXXXXXXXMPL--RRSTRER 806
S + S TPVAP PI D+ +P+ R STR
Sbjct: 787 SSTSPDWQYFSYFHPTPVAPNLPSPPIIDDIIAPDHPSPDPTPPTSPILPIVPRHSTRNV 846
Query: 807 RS-AIPDDYI-------VFLQEHEDTVDMIDDDPVSFYHAMXSSDSHK----------WI 848
+ + DYI + H + + + F ++ + K W
Sbjct: 847 TAPSYLQDYICNNIHAFTYPITHSLSHHHLSNSRSFFVMSLHTQPEPKSYAEASKLDCWK 906
Query: 849 EAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQDNVERYKARLVAKGFTQKE 908
AM E ++++ W LV LP KPIGC+WI+K K + VERYKARLVAKG+ Q E
Sbjct: 907 HAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADGTVERYKARLVAKGYNQIE 966
Query: 909 GIDYIETVSLVSSKDSFRTIMALVANLDLELHQMDVKTAFLNGDIDETIYMVQPENFVIG 968
G+DY++T S V+ + R ++AL + + LHQ+DV AFL+GD+ E +YM+ P +
Sbjct: 967 GLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDLQEDVYMMVPPG-IKS 1025
Query: 969 DPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANAVENCVYHKFSGSRFIFLVLY 1028
+ VCKL KS+YGLKQASR+WY K V+ + + ++ K + + F L++Y
Sbjct: 1026 SKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDYSLFVKKTSTSFTVLLVY 1085
Query: 1029 VDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDSSRGILGLSQKSYIDK 1088
VDDI+LA N K L F++KDLG+ + LGI++ S GI L Q+ Y
Sbjct: 1086 VDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEV-AHSKLGI-SLCQRKYCLD 1143
Query: 1089 VLKRFGMQNSRPLDTPIAKGDKFS-NQQCPKSELEIQEMQKVPYA-SVVGSLMYVQVCTR 1146
+L G S+P+ TP K + P + VP +VG L+Y+ TR
Sbjct: 1144 LLADIGSLGSKPISTPSDSSIKLHLDSSSP--------FEDVPACRRLVGRLLYLNN-TR 1194
Query: 1147 PDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTKGHMLTYRRSDQLEIIGYTDSDFAG 1206
PDI+FI L ++LS P + AA RV++YL+ G L + RS L + G++D+D+AG
Sbjct: 1195 PDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAG 1254
Query: 1207 CQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAEFVASYEASNQAIWLRNLVTGLR 1266
C D+R+S SG F L ISW++ KQ V+ S+ EAE+ A A+ + W+ L+ L
Sbjct: 1255 CIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILYLLKDLH 1314
Query: 1267 VVGGIKRPLKLYCDSRSAVLFXXXXXXXXXXKHIEIKFLAVKERVQSGQISLEHIGTNSM 1326
K P+ LYCD++SA+ KH+EI +++++QSG + L + +
Sbjct: 1315 TTCP-KLPV-LYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVSSQDQ 1372
Query: 1327 IADPLTKAVIPK 1338
+AD TKA++PK
Sbjct: 1373 VADFFTKALLPK 1384
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 317 bits (813), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 178/493 (36%), Positives = 280/493 (56%), Gaps = 14/493 (2%)
Query: 847 WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQDNVERYKARLVAKGFTQ 906
W +AM E ++++ W LV LP KPI C+WI+K K + ++ERYKARLVAKG+ Q
Sbjct: 896 WKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHADGSIERYKARLVAKGYNQ 955
Query: 907 KEGIDYIETVSLVSSKDSFRTIMALVANLDLELHQMDVKTAFLNGDIDETIYMVQPENFV 966
EG+DY +T S V+ + RTI+AL + +HQ+DV AFL+GD+ E +YM+ P+ +
Sbjct: 956 IEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGDLQEDVYMIVPQG-I 1014
Query: 967 IGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANAVENCVYHKFSGSRFIFLV 1026
+ VCKL KS+YGLKQASR+WY K ++V + + ++ ++ K + + F L+
Sbjct: 1015 TPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSDHSLFIKKTYTSFTALL 1074
Query: 1027 LYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDSSRGILGLSQKSYI 1086
+YVDD+++ + K L E+KDLG+ + LG+++ SS+GI L Q+ Y
Sbjct: 1075 VYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEV-AHSSQGI-SLCQRKYC 1132
Query: 1087 DKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVP-YASVVGSLMYVQVCT 1145
+L G ++P TP K P +P Y ++G L+Y+ T
Sbjct: 1133 LDLLTDIGFLAAKPASTPSDPSCKLHADGGP-------PFSDIPSYRRLIGRLIYL-TNT 1184
Query: 1146 RPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTKGHMLTYRRSDQLEIIGYTDSDFA 1205
RP I+F L ++L++P ++ AA R++RYL+++ G L + R L + GY+D+D+A
Sbjct: 1185 RPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGYSDADWA 1244
Query: 1206 GCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAEFVASYEASNQAIWLRNLVTGL 1265
GC DSR+S SG F L ISWK+ KQ V+ S+ EAE+ A A+ + WL L+ L
Sbjct: 1245 GCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLLYLLHDL 1304
Query: 1266 RVVGGIKRPLKLYCDSRSAVLFXXXXXXXXXXKHIEIKFLAVKERVQSGQISLEHIGTNS 1325
V +K + LYCD++SA+ KH+EI V+E++Q+ + L + +
Sbjct: 1305 HVT-TVKLHV-LYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPVTSAD 1362
Query: 1326 MIADPLTKAVIPK 1338
+AD TK ++P+
Sbjct: 1363 QLADFFTKPLLPQ 1375
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 117/442 (26%), Positives = 189/442 (42%), Gaps = 62/442 (14%)
Query: 292 NTYWVDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFRLCLSTGYFLD 351
+ +++DSGA HI S ++ K + G LVE HF T +F
Sbjct: 379 DVWFLDSGANEHIVSSTHWFTSFHKINPKPVNLPNGTSVLVEYAGTIHF-----TPHFY- 432
Query: 352 LIDTFVIPSFRRNLISVSFLDKSGFHC--SFGDSVFTLSMNSKVLGTGCLNECDNLYMLD 409
+ D PSF NLIS+ F S HC SF D +C ++ D
Sbjct: 433 IEDVLYSPSFTLNLISI-FKVCSSLHCYASFHD-----------------KKC---FLQD 471
Query: 410 IDTSYHESLHVTTRGTKRKLNIDNSAVLWHRRLGHVSKSRIERLVSDGILDTLDYTGLDS 469
+ + L RG LGHVS R+ + + TL +
Sbjct: 472 LHSQKMIGLGEQVRGL----------------LGHVSNKRLNHM--SHLYPTLTVDNHAT 513
Query: 470 CIECIKGKQTKQKRLGAIR-SSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSCYGYL 528
C C KQ K ++ +S+ EL+H DI GP + + + RYF++ +DDYS + ++
Sbjct: 514 CDICQFAKQKKLSFPTSVSVASSKFELLHFDIWGPLAVTSIHNHRYFLTILDDYSIFFWI 573
Query: 529 YLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQE 588
L+ K E K++ + Q K VRSD G E+ F
Sbjct: 574 VLLKSKYEVSQHVKNFINLIHTQYHITPKVVRSDNGPEFL-------------LNSFYAS 620
Query: 589 CGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPS 648
GIV + TP NG ER+++ ++++ R+++ S LP S W AL +++NR+ S
Sbjct: 621 KGIVHHKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPSSYWSYALLHAIFIINRVTS 680
Query: 649 KAVA-KTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGY 707
+ K+PY+L G P ++ V+G + + + TKL ++ + F+GY+ +GY
Sbjct: 681 PTLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRTKLSARARKTVFLGYAVGYKGY 740
Query: 708 NFYNPTSRTFFETRIATFFEDV 729
+ +R +R F E +
Sbjct: 741 VLLDIHTREIHISRHVQFHEHI 762
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 279 bits (714), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 219/816 (26%), Positives = 359/816 (43%), Gaps = 151/816 (18%)
Query: 548 VENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVS 607
+ENQ K +R+D G E+ F GI+ Q + TP NG
Sbjct: 2 IENQFHVTPKIIRTDNGSEFL-------------LHEFYASKGILHQRSCVETPQQNGRV 48
Query: 608 ERRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVAK-TPYELWTGRKPSL 666
ER+++ ++++ R+++ S LP S W A +L+NRIP+ + +PY L P +
Sbjct: 49 ERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDI 108
Query: 667 KHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYNFYNPTSRTFFETRIATFF 726
V+GC A + + TKL+++ S F+GY +GY Y+ +R F +R F
Sbjct: 109 TTFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFH 168
Query: 727 EDV-DFGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVAIQDPIQDNXXXXXXX 785
E V + + +++ +E S ++IP VSD +P +
Sbjct: 169 ECVLPYKSISSSQSLDWEYFTSISSLLIIP-SVSDISHSPSTTKYVP-------HTQPTT 220
Query: 786 XXXXXXXXXXXMPLRRSTRERRS-AIPDDYIVFLQEHEDTVDMIDDDPVSFYHAMXSSDS 844
P+R S+R + S + DYI + ++ YH + + S
Sbjct: 221 TTTPTNDPSRPPPIRCSSRNKISPSYLKDYICPHKSSTSVNNLYSISNYVSYHNISNPHS 280
Query: 845 HK---------------------WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFK 883
H W +AM E ++++ W ++ P KPIGC+WI+K
Sbjct: 281 HFILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYK 340
Query: 884 TKRDSQDNVERYKARLVAKGFTQKEGIDYIETVSLVSSKDSFRTIMALVANLDLELHQMD 943
K ++ D +ERYKARLVA +G + +E + D F T +
Sbjct: 341 IKHNADDTIERYKARLVA------KGYNQVEGL------DYFDTYSPVA----------- 377
Query: 944 VKTAFLNGDIDETIYMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFG 1003
KH +L ASR+WY K ++V+ G
Sbjct: 378 ---------------------------KHTTIRL---------ASRKWYEKLASLLVNHG 401
Query: 1004 FEANAVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASF 1063
++ + ++ ++ K S ++F L++YVDDI+LA N K L F++KDLG+ +
Sbjct: 402 YKQASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIKDLGQLKY 461
Query: 1064 VLGIQIHRDSSRGILGLSQKSYIDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEI 1123
LG+++ S GI L Q+ Y +L G+ +S+P+ TP K + P
Sbjct: 462 FLGLEV-AHSKLGI-SLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSPL----- 514
Query: 1124 QEMQKVP-YASVVGSLMYVQVCTRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTK 1182
+P Y +VG L+Y+ TRPDI+FI L ++LS P ++ AA RV+RYL+
Sbjct: 515 --YTDIPAYRRLVGRLLYLNA-TRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCP 571
Query: 1183 GHMLTYRRSDQLEIIGYTDSDFAGCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTME 1242
G L + RS I GY+D+D+AGC+D+R+S SG F L ISW++ KQ V+ S+ E
Sbjct: 572 GKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSE 631
Query: 1243 AEFVASYEASNQAIWLRNLVTGLRVVGGIKRPLKLYCDSRSAVLFXXXXXXXXXXKHIEI 1302
AE+ A A++ ++ KH+EI
Sbjct: 632 AEYRALGAATSNPVF------------------------------------HERTKHLEI 655
Query: 1303 KFLAVKERVQSGQISLEHIGTNSMIADPLTKAVIPK 1338
V+E++ +G + L I + + +AD TK+++P+
Sbjct: 656 DCHIVREKLAAGIMKLLPISSKNQLADCFTKSILPQ 691
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 240 bits (612), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 201/750 (26%), Positives = 332/750 (44%), Gaps = 102/750 (13%)
Query: 282 CEVNLTSAPKNTYWVDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFR 341
C ++ S P ++ +DSGA H+ S ++ K + + NG + V G+
Sbjct: 341 CSFHVNSIP--SWIIDSGANDHVCFSKTHFTSFYK--IKPVLVTLPNGTSIYVHYAGNVH 396
Query: 342 LCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFG----DSVFTLSMNSKVLGTG 397
+L L P F+ NLISVS + S CS V + +++G G
Sbjct: 397 FTP----YLHLTHVLYSPEFKVNLISVSKICDS-LSCSVNFVSNKCVIQDVTSQRMIGLG 451
Query: 398 CLNECDNLYMLDID-TSYHESLHVTTRGTKRKL-----NIDNS----------------A 435
++ D LY L + + LH + + K+ NI S +
Sbjct: 452 --DKSDGLYKLSMHFVNQQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPES 509
Query: 436 VLWHRRLGHVSKSRIE---RLVSDGILDTLDYTGLDSCIECIKGKQTKQKRLGAIRSSN- 491
LWH RLGH+S R+ RL I+D + D C + K+L SS+
Sbjct: 510 ALWHFRLGHLSNQRLSTMSRLYPSIIVD--NKAACDIC------HFARHKKLPFPHSSSH 561
Query: 492 ---VLELIHTDICGPFHIAARNGQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEV 548
+L+H DI GP I +G +YF++ +DD++ + ++ L+ K+E K++ A +
Sbjct: 562 ANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALI 621
Query: 549 ENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSE 608
ENQ K +R+D G E+ F GI+ Q + TP NG E
Sbjct: 622 ENQFHITPKIIRTDNGSEFL-------------LHDFYASKGILHQRSCVETPQQNGRVE 668
Query: 609 RRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVA-KTPYELWTGRKPSLK 667
R+++ ++++ R+++ S LP S W A +L+NR+P+ + ++PY+L P +
Sbjct: 669 RKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVT 728
Query: 668 HLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYNFYNPTSRTFFETRIATFFE 727
V+GC A + + TKL+++ S F+GY +G Y+ +R F +R F E
Sbjct: 729 TFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISRHVVFHE 788
Query: 728 DV-DFGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVAIQDPIQDNXXXXXXXX 786
V + + ++ +E S + +P S + AI D +
Sbjct: 789 CVLPYKSNSSPQSHDWEYFTSFSTPLDLPSGTDTSPHS-----AITDIVP--YTSPTPTS 841
Query: 787 XXXXXXXXXXMPLRRSTRERRSAIPDDYIV-FLQEHEDTVDMIDDDPVS---FYHAMXSS 842
+P R S+R + P Y+ F+ ++ + + +S YH + +S
Sbjct: 842 TSSIIDIPPPLPTRHSSRNK---TPPSYLKDFICANKSSASVNSLHSISNFVSYHNISNS 898
Query: 843 DSH---------------------KWIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWI 881
SH W +AM E ++++ W ++ LP KPIGC+WI
Sbjct: 899 HSHFILSLHAHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWI 958
Query: 882 FKTKRDSQDNVERYKARLVAKGFTQKEGIDYIETVSLVSSKDSFRTIMALVANLDLELHQ 941
+K K + +ERYKARLVAKG+ Q EG+DY +T S V+ + R ++AL + + LHQ
Sbjct: 959 YKVKHHADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQ 1018
Query: 942 MDVKTAFLNGDIDETIYMVQPENFVIGDPK 971
+DV AFL+GD+ E +YM P P
Sbjct: 1019 LDVNNAFLHGDLQEDVYMDIPPGVSTNKPN 1048
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 235 bits (600), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 196/335 (58%), Gaps = 12/335 (3%)
Query: 847 WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQDNVERYKARLVAKGFTQ 906
W +AM +E+ ++ DN W L LP+ KK +GC+W++K K + +VERYKARLV KG+TQ
Sbjct: 348 WQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVERYKARLVVKGYTQ 407
Query: 907 KEGIDYIETVSLVSSKDSFRTIMALVANLDLELHQMDVKTAFLNGDIDETIYMVQPENFV 966
GIDY ET S V + RT++ A +HQ+DV AFL+GD+ E +YM P
Sbjct: 408 HHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPGLA 467
Query: 967 IGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANAVENCVYHKFSGSRFIFLV 1026
K LVCKL KS+YGLKQASRQWY K + + + G+E + + +++K G+ +FL
Sbjct: 468 TPH-KDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVFLG 526
Query: 1027 LYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQI-HRDSSRGILGLSQKSY 1085
+YVDDILL + E K FL F++KDLG + LG+++ ++D GIL +SQ+ +
Sbjct: 527 VYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKDD--GIL-VSQRKF 583
Query: 1086 IDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVPYASVVGSLMYVQVCT 1145
+ +LK F + PL +P+ K + + + Y ++G L ++ T
Sbjct: 584 VLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLD------DPTYYRKLIGKLNFL-THT 636
Query: 1146 RPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQR 1180
R D+++ V +L +Y+ +P + AA ++RYL++
Sbjct: 637 RLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKK 671
Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 58/241 (24%)
Query: 489 SSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEV 548
++ + EL+H DI GP+ + +YFI+ +DD+S + L+ KS + V K++ V
Sbjct: 16 TTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCKSNAFHVLKAFILMV 75
Query: 549 ENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSE 608
ENQ +K++RSD G E+ S E LF Q GI+ Q + P TP NGV E
Sbjct: 76 ENQFSTTVKTIRSDNGLEF-----TSNET-----TLFFQSKGIIHQKSCPYTPQQNGVVE 125
Query: 609 RRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVAKTPYELWTGRKPSLKH 668
R+++ +++ R+++ S LP W E
Sbjct: 126 RKHKFILETARALLFQSKLPVKYWSEF--------------------------------- 152
Query: 669 LHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYNFYNPTSRTFFETRIATFFED 728
+ TK D KTI FVGY ++GY N +++ +R F E
Sbjct: 153 ---------------HRTKFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRDVIFHET 197
Query: 729 V 729
+
Sbjct: 198 I 198
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 176/303 (58%), Gaps = 12/303 (3%)
Query: 851 MNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQDNVERYKARLVAKGFTQKEGI 910
M E +++ W +V LP KPIGC+WIFK K + ++ERYKARLVAKG+ Q EG+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 911 DYIETVSLVSSKDSFRTIMALVANLDLELHQMDVKTAFLNGDIDETIYMVQPENFVIGDP 970
DY +T S V+ + R I+AL + LHQ DV AFL+G++ E +YM+ P V
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSH 119
Query: 971 KHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANAVENCVYHKFSGSRFIFLVLYVD 1030
+ VCKL KS+YGL+QAS +WY K +++S G++ A + ++ K + S F L++YVD
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 1031 DILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDSSRGILGLSQKSYIDKVL 1090
D++LA + + K L F++KD+G+ + LG+++ S+ + L Q+ Y +L
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAH--SKSGISLCQRKYCLDLL 237
Query: 1091 KRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVP-YASVVGSLMYVQVCTRPDI 1149
+ G+ S+P++TP K N P +P Y ++G L+Y+ TRPDI
Sbjct: 238 EDSGLTGSKPMNTPSDPSIKLHNDSAP-------SFPDIPAYRRLIGRLLYLNT-TRPDI 289
Query: 1150 SFI 1152
++I
Sbjct: 290 TYI 292
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 212/447 (47%), Gaps = 34/447 (7%)
Query: 293 TYWVDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFRLCLSTGYFLDL 352
T+ VDSGA+ HI S++ +Y +I + NG++ AI F ++ L
Sbjct: 391 TWIVDSGASDHICSSIKFFDSYAPII--PVHIKLPNGNM----AIAKFSGTVNFSPGLIA 444
Query: 353 IDTFVIPSFRRNLISVSFL--DKSGFHCSFGDSVFTLS-MNSKVLGTGCLNECDNLYMLD 409
+ + F+ NL+SV L D + D F N K+ G G L E LY L+
Sbjct: 445 RNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIE--GLYFLN 502
Query: 410 IDTSY-----HESLHVTTRGTKRKLNIDNSAVLWHRRLGHVSKSRIERLVSDGILDTLDY 464
+ + H+ + ++ + + A LWH RLGH+S R+ R+ +D
Sbjct: 503 LGSQVFSQFNHQPVIALSQSSSSTTFLPQEA-LWHFRLGHLSNDRLLRMQQHFPCIKVDS 561
Query: 465 TGLDSCIECIKGKQTKQK-RLGAIRSSNVLELIHTDICGPFHIAARNGQRYFISFIDDYS 523
+ C C + K +L ++S+ ELIH DI GP + +G +YFI+ +DDYS
Sbjct: 562 NSV--CDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYS 619
Query: 524 CYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFA 583
+ ++ L KSE +++ +ENQ K+K+VR+D G E+
Sbjct: 620 RFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL-------------MP 666
Query: 584 LFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLL 643
F GI Q + TP NG ER+++ ++++ R+++ S LP+ W ++ Y++
Sbjct: 667 DFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSVLHAIYII 726
Query: 644 NRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSE 702
NRIP+ + K+PY L G P L + V+GC + A + TK DS+ F+GY +
Sbjct: 727 NRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQ 786
Query: 703 RSRGYNFYNPTSRTFFETRIATFFEDV 729
+G Y+ +T F +R T+ E +
Sbjct: 787 GIKGAILYDLNHKTIFASRNVTYHEHI 813
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 163 bits (413), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 207/446 (46%), Gaps = 32/446 (7%)
Query: 293 TYWVDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFRLCLSTGYFLDL 352
T+ VDSGA+ HI S++ +Y +I + NG++ AI F ++ L
Sbjct: 321 TWIVDSGASDHICSSIKNFDSYAPII--PVHIKLPNGNM----AIAKFSGTVTFSPGLIA 374
Query: 353 IDTFVIPSFRRNLISVSFL--DKSGFHCSFGDSVFTLSM-NSKVLGTGCLNECDNLYMLD 409
+ + F+ NL+SV L D + D F N K+ G G L E LY L+
Sbjct: 375 RNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIE--GLYFLN 432
Query: 410 IDTSYHESLH----VTTRGTKRKLNIDNSAVLWHRRLGHVSKSRIERLVSDGILDTLDYT 465
+ + + + + LWH RLGH+S R+ R+ +D
Sbjct: 433 LGSQVFSQFNHQPVIASSQASSSTTFLPQEALWHFRLGHLSNDRLLRMQQHFPCIKVDSN 492
Query: 466 GLDSCIECIKGKQTKQK-RLGAIRSSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSC 524
+ C C + K +L ++S+ ELIH DI GP + +G +YFI+ +DDYS
Sbjct: 493 SV--CDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSR 550
Query: 525 YGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFAL 584
+ ++ L KSE +++ +ENQ K+K+VR+D G E+
Sbjct: 551 FTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL-------------MPD 597
Query: 585 FLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLN 644
F GI Q + TP NG ER+++ ++++ R+++ S LP+ W ++ Y++N
Sbjct: 598 FYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKVFWSYSVLHAIYIIN 657
Query: 645 RIPSKAVA-KTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSER 703
RIP+ + K+PY L G P L + V+GC + A + TK DS+ F+GY +
Sbjct: 658 RIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQG 717
Query: 704 SRGYNFYNPTSRTFFETRIATFFEDV 729
+G Y+ +T F +R T+ E +
Sbjct: 718 IKGAILYDLNHKTIFASRNVTYHEHI 743
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 160 bits (404), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 151/272 (55%), Gaps = 13/272 (4%)
Query: 1013 VYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRD 1072
++ K + S F L++YVDDI+LA N K L F++KDLG+ +VLG+++
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAH- 59
Query: 1073 SSRGILGLSQKSYIDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVP-Y 1131
S +GI L Q+ Y +L G NS+P+ T K N P E +P Y
Sbjct: 60 SKQGI-SLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYE-------DIPSY 111
Query: 1132 ASVVGSLMYVQVCTRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTKGHMLTYRRS 1191
++G L+Y+ TRPDI+FI L ++LS P + AA RV++YL+ G L + R+
Sbjct: 112 RRLIGRLLYLN-STRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRN 170
Query: 1192 DQLEIIGYTDSDFAGCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAEFVASYEA 1251
L + G++D D+AGC DSR+S SG F + ISW++ KQT V+ S+ EAE+ A A
Sbjct: 171 SSLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASA 230
Query: 1252 SNQAIWLRNLVTGLRVVGGIKRPLKLYCDSRS 1283
+ + W+ L+ L + K P+ L+CD+++
Sbjct: 231 TCELQWILYLLKDLNIQSS-KLPV-LFCDNQN 260
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 193/414 (46%), Gaps = 36/414 (8%)
Query: 296 VDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDT 355
VD+GAT H L +Y K + + NG ++E IG +L L + +
Sbjct: 400 VDTGATHHTCYDLNWFTSYSKIETIN--VNLPNGSVIEACYIGQVKLSKD----LSIDNV 453
Query: 356 FVIPSFRRNLISVSFL-DKSGFHCSFGDSVFTLSMNSKVLGTGCLNECDNLYMLDIDTSY 414
+P F NLISVS L + F + + + + G E LY L+ D
Sbjct: 454 LYLPKFAVNLISVSKLCREQNCKLEFEADICIIQEKNTLRKIGLAKEKHGLYYLETDERN 513
Query: 415 HESLHVTTRGTKRKLNIDNSAVLWHRRLGHVSKSRI---ERLVSDGILDTLDYTGLDSCI 471
S+ + + VLWH RLGH+S R+ ++ S + +T D C
Sbjct: 514 KVSVSNISAQVELHQKHVPDGVLWHLRLGHLSHDRMICMNKMYS--YVPVSPHTACDVCQ 571
Query: 472 ECIKGKQTKQKRLG-AIRSSNV---LELIHTDICGPFHIAARNGQRYFISFIDDYSCYGY 527
C +QK L I S N +L+H DI GPF + +G +YF++ +DD + + +
Sbjct: 572 MC------RQKILPFPISSRNAKTAFDLVHFDIWGPFSTTSVHGHKYFLTILDDCTRHVW 625
Query: 528 LYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQ 587
+ ++ KSE+ K++ + VE Q +KIK +RSD G E+ + F
Sbjct: 626 IVMLKNKSEASYQVKNFVSMVERQFERKIKMIRSDNGPEFMLRE-------------FYD 672
Query: 588 ECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIP 647
+ GI+ Q + TP NG ERR++ ++++ R+++ S LP++ W A+ YL+NRIP
Sbjct: 673 KKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQSKLPKNFWSYAVLHAVYLINRIP 732
Query: 648 SKAV-AKTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGY 700
+K + K+ YE+ P L L V+GC + A N K D K F+G+
Sbjct: 733 TKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVNRYKFDPKARKCAFLGF 786
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 160/642 (24%), Positives = 265/642 (41%), Gaps = 110/642 (17%)
Query: 279 LVCCEVNLTSAPKNTYWVDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIG 338
+ C +N S + +++DSGA HI + ++ K R + + NG V VE G
Sbjct: 367 IFSCSINSKS---DVWFLDSGANEHIVNNTHWFTSFHK--INPRPVNLPNGSSVLVEYAG 421
Query: 339 HFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFGDSVFTLSMNSKVLGTGC 398
R + ++L+ + PSF NLIS+ F S +C + + N + L
Sbjct: 422 TIRF--TPQFYLE--NVLYSPSFTLNLISI-FKVCSSLNC------YAIFHNKQCL---- 466
Query: 399 LNECDNLYMLDIDTSYHESLHVTTRGTKRKLNIDNSAVLWHRRLGHVSKSRIERLVSDGI 458
L + + M+ + G + + SA LWH RLGHVS R+ + +
Sbjct: 467 LQDLHSQKMIGL-------------GEQFGVYYSYSA-LWHFRLGHVSPKRLIHM--SQL 510
Query: 459 LDTLDYTGLDSCIECIKGKQTKQKRLGAIRSSNV-LELIHTDICGPFHIAARNGQRYFIS 517
TL +C C KQ K +I +++ EL+H DI GP I + + RYF++
Sbjct: 511 YPTLTVDVHATCDICHFAKQKKLPFSNSISVASIKFELLHFDIWGPLSITSIHNHRYFLT 570
Query: 518 FIDDYSCYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQ 577
+DDYS Y ++ L+ KSE K++ ++ Q K+VRSD G E+
Sbjct: 571 ILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEFL--------- 621
Query: 578 RPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALK 637
F GIV + TP NG ER+++ ++++ R+++ S LP S W AL
Sbjct: 622 ----LHSFYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQSKLPVSYWSYALL 677
Query: 638 TTAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSY 696
+++NR+ S + K+PY+L P+ V+G + + TKL ++ S
Sbjct: 678 HATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSHRTKLSARARKSV 737
Query: 697 FVGYSERSRGYNFYNPTSRTFFETRIATFFEDV-DFGGRNKERNIVFE---------EEP 746
F+GY+ +GY + +R +R F+E + + + +E P
Sbjct: 738 FLGYTVGFKGYVLLDIHTREIHISRHVQFYEHILPYPATSSSITTAWEYFSSDTCSSSNP 797
Query: 747 SKDDSVLIPFVVSDSVQTPVAPVAIQDPIQDNXXXXXXXXXXXXXXXXXXMPLRRSTRER 806
+ D + +P +P + + P D+ R+S R
Sbjct: 798 NSDTPITLP-------SSPPPFIDVDIPPTDHEHPISSIPSPSPPII------RKSIRNT 844
Query: 807 RSAIP-DDYIVFLQEHEDTVDMIDDD-----PVSFYH------------AMXSSDSHK-- 846
DY+ + T ++ D+ P+S Y+ AM S DSH
Sbjct: 845 HPPTHLQDYVC----NTSTASVLSDNSFVHHPISHYYSYNNLSSSHCAFAM-SLDSHTEP 899
Query: 847 -----------WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIG 877
W +AM E ++++ W LV LP KPIG
Sbjct: 900 TTYAEASKFDCWNQAMKVELSALENTGTWRLVDLPPNVKPIG 941
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 160/311 (51%), Gaps = 25/311 (8%)
Query: 1025 LVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDSSRGILGLSQKS 1084
+++YVDD+++A N + K +L + F MKDLG + LG+++ R ++ L + Q+
Sbjct: 3 VLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANG--LFMCQRK 60
Query: 1085 YIDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVPYASVVGSLMYVQVC 1144
Y +L M + +P P+ + K + P Y ++ L+Y+ +
Sbjct: 61 YTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCS------DPSRYRRLISRLIYLTI- 113
Query: 1145 TRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTKGHMLTYRRSDQLEIIGYTDSDF 1204
P+I++ V +L RV+RYL+ + G + + + L+++ Y DSD+
Sbjct: 114 MHPEITYSVHIL--------------TMRVLRYLKSSPGQGIILPKENDLQLVAYCDSDW 159
Query: 1205 AGCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAEFVASYEASNQAIWLRNLVTG 1264
A C +R+STSGY+ L ISWK+ KQ+ V+ S+ EAE+ A +A ++ IWLR+L++
Sbjct: 160 ASCPLTRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSS 219
Query: 1265 LRVVGGIKRPLKLYCDSRSAVLFXXXXXXXXXXKHIEIKFLAVKERVQSGQISLEHIGTN 1324
L+V P L CD+++A+ KHIE+ ++ +Q G IS ++ T
Sbjct: 220 LQV--HYDSPTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTK 277
Query: 1325 SMIADPLTKAV 1335
AD TKA+
Sbjct: 278 KQQADIFTKAL 288
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/438 (26%), Positives = 193/438 (44%), Gaps = 45/438 (10%)
Query: 493 LELIHTDICGPFHIAARNGQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEVENQL 552
+L+H DI GP I + +G +YF++ +DD++ + ++ L+ K+E K++ +ENQ
Sbjct: 40 FQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLWIILLKTKAEVPMHIKNFIVMIENQF 99
Query: 553 GKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNR 612
K +R+D G E+ F GI+ Q + TP NG ER+++
Sbjct: 100 HVTPKIIRTDNGSEFL-------------LHEFYASKGILHQSSCVETPQQNGRVERKHQ 146
Query: 613 TLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVAK-TPYELWTGRKPSLKHLHV 671
++++ R+++ S LP S W A +L+NRI + + +PY L P + V
Sbjct: 147 HILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKV 206
Query: 672 WGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYNFYNPTSRTFFETRIATFFEDV-D 730
+GC A + + TKL+++ S F+GY +GY Y+ +R F +R F E V
Sbjct: 207 FGCLCYASSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLP 266
Query: 731 FGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVAIQDPIQDNXXXXXXXXXXXX 790
+ + +++ +E + S I VSD +P I+
Sbjct: 267 YKSISSSQSLDWEYF-TSISSPPIIPSVSDISHSP-------STIESVPHTQPTTTTTPT 318
Query: 791 XXXXXXMPLRRSTRERRS-AIPDDYIVFLQEHEDTVDMIDDDPVSFYHAMXSSDSHKW-- 847
P+R S+R + S + DYI + ++ YH + + SH
Sbjct: 319 NDPSPPPPIRCSSRNKISPSYLKDYICPHKSSTSVNNLYSISNYVSYHNISNPHSHFILS 378
Query: 848 IEAMNE--EYKSMQDNQVW-----------------DLVQLPEGKKPIGCKWIFKTKRDS 888
+ A NE Y + W ++ P KPIGC+WI+K K +
Sbjct: 379 LHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHA 438
Query: 889 QDNVERYKARLVAKGFTQ 906
+ERYKARLVAKG+ Q
Sbjct: 439 DGTIERYKARLVAKGYNQ 456
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/463 (26%), Positives = 206/463 (44%), Gaps = 72/463 (15%)
Query: 282 CEVNLTSAPKNTYWVDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFR 341
C ++ S P ++ +DSGA H+ S ++ K + + NG + V G+
Sbjct: 341 CSFHVNSIP--SWIIDSGANDHVCFSKTHFTSFYK--IKPVLVTLPNGTSIYVHYAGNVH 396
Query: 342 LCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFG----DSVFTLSMNSKVLGTG 397
T Y L L P F+ NLISVS + S CS V + +++G G
Sbjct: 397 F---TPY-LHLTHVLYSPEFKVNLISVSKICDS-LSCSVNFVSNKCVIQDVTSQRMIGLG 451
Query: 398 CLNECDNLYMLDID-TSYHESLHVTTRGTKRKL-----NIDNS----------------A 435
++ D LY L + + LH + + K+ NI S +
Sbjct: 452 --DKSDGLYKLSMHFVNQQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPES 509
Query: 436 VLWHRRLGHVSKSRIE---RLVSDGILDTLDYTGLDSCIECIKGKQTKQKRLGAIRSSN- 491
LWH RLGH+S R+ RL I+D + D C + K+L SS+
Sbjct: 510 ALWHFRLGHLSNQRLSTMSRLYPSIIVD--NKAACDIC------HFARHKKLPFPHSSSH 561
Query: 492 ---VLELIHTDICGPFHIAARNGQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEV 548
+L+H DI GP I +G +YF++ +DD++ + ++ L+ K+E K++ A +
Sbjct: 562 ANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALI 621
Query: 549 ENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSE 608
ENQ K +R+D G E+ F GI+ Q + TP NG E
Sbjct: 622 ENQFHITPKIIRTDNGSEFL-------------LHDFYASKGILHQRSCVETPQQNGRVE 668
Query: 609 RRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVA-KTPYELWTGRKPSLK 667
R+++ ++++ R+++ S LP S W A +L+NR+P+ + ++PY+L P +
Sbjct: 669 RKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVT 728
Query: 668 HLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYNFY 710
V+GC A + + TKL+++ S F+GY NFY
Sbjct: 729 TFKVFGCLCYASSLQSHRTKLETRARKSVFLGYK------NFY 765
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 164/378 (43%), Gaps = 88/378 (23%)
Query: 943 DVKTAFLNGDIDETIYMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSF 1002
D FL+GD+ E +YM P+ P VCKL KS+YGLKQASR+W+ K ++++
Sbjct: 204 DANNTFLHGDLQEDVYMHPPQGVSPPRPGQ-VCKLLKSLYGLKQASRRWFEKLISLLLTI 262
Query: 1003 GFEANAVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEAS 1062
GF + ++ + S + F L++YV
Sbjct: 263 GFVQASADHSFLIRASPTSFTALLIYV--------------------------------- 289
Query: 1063 FVLGIQIHRDSSRGILGLSQKSYIDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELE 1122
SS+GI L Q+ Y +L G+ + + TP+ P +
Sbjct: 290 --------AHSSKGI-SLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFD-- 338
Query: 1123 IQEMQKVPYASVVGSLMYVQVCTRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTK 1182
+ Y ++G L+Y+ TRPDISF L ++++ P +++ + A V+RYLQ
Sbjct: 339 ----DVLAYRCLIGCLLYLTT-TRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCP 393
Query: 1183 GHMLTYRRSDQLEIIGYTDSDFAGCQDSRKSTS------GYIFLLAGGAISWKSVKQTLV 1236
G L + R+ +++++G++D+D+ GC DSR+S + ++F L G IS S+
Sbjct: 394 GRGLFFPRTSEMQLLGFSDADWGGCVDSRRSLAFQEAIHRFLFFLRSG-ISCFSISHP-- 450
Query: 1237 ATSTMEAEFVASYEASNQAIWLRNLVTGLRVVGGIKRPLKLYCDSRSAVLFXXXXXXXXX 1296
R + +R+ LYCD++SA+
Sbjct: 451 ----------------------RTPMAHIRLS-------ILYCDNQSALHIAANPVFYER 481
Query: 1297 XKHIEIKFLAVKERVQSG 1314
KH++I V+E+VQ G
Sbjct: 482 TKHLDIDCHIVREKVQRG 499
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 110/428 (25%), Positives = 182/428 (42%), Gaps = 61/428 (14%)
Query: 289 APKNTYWVDSGATAHISVSLQGCLNYR--KPTDGERYIYVGNGDLVEVEAIGHFRLCLST 346
P + + +DSGA HI SL +Y KP + + NG V V+ G + S
Sbjct: 384 VPSDHWLIDSGANEHICSSLHLFHSYYRIKPI----CVNLPNGSSVIVQYAG--TVVFSP 437
Query: 347 GYFLDLIDTFVIPSFRRNLISVSFLDKS-GFHCSFGDSVFTLS--MNSKVLGTGCLNECD 403
+ + PSF+ LISVS + +S +H F + + + K++G G N CD
Sbjct: 438 HF--HITHVLYSPSFKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLG--NLCD 493
Query: 404 NLYMLDIDTSYHESLHVTTRGTK-------------RKLNIDNSAVLWHRRLGHVSKSRI 450
LY L H + ++ S +WH RLGH+S R+
Sbjct: 494 GLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQRL 553
Query: 451 ERLVSDGILDTLDYTGLDSCIECIKGKQTKQKRLGAIRSSNVLELIHTDICGPFHIAARN 510
S + + T + +I SS EL+H DI GP + + +
Sbjct: 554 ------------------SMMHSLYSSITIDNKAYSIASSK-FELLHFDIWGPLSVTSVH 594
Query: 511 GQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGK 570
G +YF++ +DD+S + ++ L+ KSE + K++ + K +RSD G E+
Sbjct: 595 GHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHYQITPKYIRSDNGPEFL-- 652
Query: 571 YDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPES 630
F GI+ Q + TP NG ER+++ ++++ R+++ S LP
Sbjct: 653 -----------IPEFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSKLPNF 701
Query: 631 LWGEALKTTAYLLNRIPSKAV-AKTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLD 689
W A+ +L+N++P+ K+PY+L P + V+GC A +KL
Sbjct: 702 FWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQRSKLQ 761
Query: 690 SKTISSYF 697
S+ S F
Sbjct: 762 SRARKSIF 769
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 178/357 (49%), Gaps = 61/357 (17%)
Query: 969 DPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANAVENCVYHKFS-GSRFIFLVL 1027
D +V KL K++YGLKQA R W + + V GF+ E+ VY K S G+ + + L
Sbjct: 260 DYTEVVFKLNKALYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVKGSEGTSLLIICL 319
Query: 1028 YVDDILLATNCKVLLHETK--VFLSKHFEMKDLGEASFVLGIQIHRDSSRGILGLSQKSY 1085
+ L T ++L++TK + K F M D + + L+ +
Sbjct: 320 EI----LRTTKGLILNQTKYDTEIQKKFNMLDFNSS----------------ITLAYANN 359
Query: 1086 IDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVPYASVVGSLMYVQVC- 1144
I++V + + +D I + ++G L Y+ C
Sbjct: 360 INEV-----KEEDKGVDPTILR-------------------------RLIGLLRYL--CQ 387
Query: 1145 TRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTKGHMLTY---RRSDQLEIIGYTD 1201
+R DIS+ VG++ +++SNP ++ AAK+++RY+ T + + + + ++QL +I Y+D
Sbjct: 388 SRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSD 447
Query: 1202 SDFAGCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAEFVASYEASNQAIWLRNL 1261
+D+ + R+ T+ ++F+L G ISW S KQ +VA S+ E E+V A+ QA WL+N+
Sbjct: 448 ADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNV 507
Query: 1262 VTGLRVVGGIKRPLKLYCDSRSAVLFXXXXXXXXXXKHIEIKFLAVKERVQSGQISL 1318
+ + +K+P+KL D++ A+ KHIE KF ++++V +I++
Sbjct: 508 LEQSMI--KLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLRDQVNKCKINI 562
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 134/306 (43%), Gaps = 47/306 (15%)
Query: 617 MVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCP 675
MVRSM+ +P WG A+ T Y+LNR P+K + K P E+W+ RKPS+ +L V+G
Sbjct: 1 MVRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSI 60
Query: 676 AEARPYKPNETKLDSKTISSYFVGYSERSRGYNFYNPTSRTFFETRIATFFEDVDFGGRN 735
KL+ KT + VGY + Y + S+ TR E+ + +
Sbjct: 61 FYKHVPDSRRKKLEDKTEAMILVGY-HNTGAYRLLDLHSKKISITRDVKVLEEEYWDWNS 119
Query: 736 K-----ERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVAIQDPIQDNXXXXXXXXXXXX 790
E+N++ E + D+ + V+S+ V P I P ++
Sbjct: 120 NECSVYEKNVIIENKKESDELLTNEEVISEEVSYE-EPTTIARPQRNKQM---------- 168
Query: 791 XXXXXXMPLRRSTRERRSAIPDDYIVFLQEHEDTVDMIDDDPVSFYHAMXSSDSHKWIEA 850
LRR + DD I E ++D P+
Sbjct: 169 --------LRR--LQDCQVTGDDEIGSDGELVHFAMLVDTKPLY---------------- 202
Query: 851 MNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQDNVERYKARLVAKGFTQKEGI 910
+ KS NQ W+L++L +GKK I KW+FK K + + + ++KARLVA+ F +KEG
Sbjct: 203 ---KLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGF 259
Query: 911 DYIETV 916
DY E V
Sbjct: 260 DYTEVV 265
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 129/506 (25%), Positives = 208/506 (41%), Gaps = 111/506 (21%)
Query: 288 SAPKNTYW-VDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFRLCLST 346
S+ N+YW VDSGA HI L +Y + + + +G +V V G+ S
Sbjct: 355 SSLSNSYWLVDSGANEHICRDLNLFTSYHAISPS--IVTLPDGSIVTVTHAGYINF--SP 410
Query: 347 GYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSF----GDSVFTLSMNSKVLGTGCLNEC 402
++L + SFR NL+SV + +S C+F + S + K++G N+
Sbjct: 411 QFYL--TNVLYSSSFRLNLMSVHKVCES-LSCTFQFLPNQCIIQDSTSLKMIGLA--NQQ 465
Query: 403 DNLYMLDIDTSYHESLHVTTRGTKRKLNIDNSAVLWHRRLGHVSKSRIERLVS--DGILD 460
D LY +LGH+S R+ + S I+
Sbjct: 466 DGLY----------------------------------KLGHLSHQRMNMMSSLYSNIVS 491
Query: 461 TLDYTGLDSCIECIKGKQTKQKRLG-AIRSSNV---LELIHTDICGPFHIAARNGQRYFI 516
+ D C KQK L +I +S+ EL+H DI GP I++ +G +YF+
Sbjct: 492 DNKNSVCDIC------HFAKQKHLPFSISTSHATSNFELLHLDIWGPLSISSIHGHKYFL 545
Query: 517 SFIDDYSCYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGE 576
+ +DD+S + ++ + KS KS+ V+ Q K +RSD G E+
Sbjct: 546 TIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFHVTPKCIRSDNGPEFL-------- 597
Query: 577 QRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEAL 636
F + GI+ Q + TP NG ER++ ++++ R+++ S LP S W AL
Sbjct: 598 -----ILSFYESLGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQSKLPASYWSYAL 652
Query: 637 KTTAYLLNRIPSKAV-AKTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISS 695
+L+NR P+ + ++PY + P + +K + KT+
Sbjct: 653 LHAVFLINRKPTPLLEGQSPYYALHHKFPDID------------TFKNQASTRARKTV-- 698
Query: 696 YFVGYSERSRGYNFYNPTSRTFFETRIATFFEDVDFGGRNKERNIVFEEEPSKDDSVL-- 753
F+GY +G+ + SR F +R F E F PS +S+
Sbjct: 699 -FLGYKSGYKGFILLDIHSREIFVSRHVVFHE-------------YFLPYPSNSESITSQ 744
Query: 754 ------IPFVVSDSVQTPVAPVAIQD 773
I VV+ SV TP P+ I D
Sbjct: 745 WEYFSPIQAVVTKSVDTP-PPIPIID 769
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 28/148 (18%)
Query: 851 MNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQDNVERYK-------------- 896
M E ++++ W LV LP KPIGC+WI+K K + +++RYK
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 897 --------------ARLVAKGFTQKEGIDYIETVSLVSSKDSFRTIMALVANLDLELHQM 942
ARLV KG+ Q EG DY +T SLV+ + RT++AL + +H++
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 943 DVKTAFLNGDIDETIYMVQPENFVIGDP 970
D +AFL+GD+ E +YM+ P+ P
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGITTSKP 148
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/458 (24%), Positives = 176/458 (38%), Gaps = 117/458 (25%)
Query: 291 KNTYW-VDSGATAHI--SVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFRLCLSTG 347
K+ YW +DSGA HI S+SL KP ++ + NG V V G
Sbjct: 329 KSNYWLIDSGANEHICSSLSLLHSFYIIKPL----HVTLPNGTSVLVHYAG--------- 375
Query: 348 YFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFGDSVFTLSMNSKVLGTGCLNECDNLYM 407
+VSF FH + +K++G G L CD L
Sbjct: 376 -------------------TVSF--SPHFH-----------ITNKMIGLGDL--CDGLCR 401
Query: 408 LDIDTSYHESLHVTTRGTKRKLNIDN-------------SAVLWHRRLGHVSKSRIERLV 454
L I S + S K++ ++ S LWH RLGH+S R+ ++
Sbjct: 402 LRIPASSNFSHCFVNNFQCNKVSYESCNSVSCNNNVHIPSTALWHFRLGHLSNQRLSQM- 460
Query: 455 SDGILDTLDYTGLDSCIECIKGKQTK--QKRLGAIRSSNVLELIHTDICGPFHIAARNGQ 512
+ + C C KQ K +I SSN EL++ DI GP + +GQ
Sbjct: 461 -HHLYPDIHVDNKFICDICHFAKQRKLPYNSSTSIASSN-FELLYLDIWGPLAKVSIHGQ 518
Query: 513 RYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYD 572
RYF++ +DD+S + + L KSE + + ++N+ K +RSD G +
Sbjct: 519 RYFLTIVDDHSRFLWTILFKNKSEVPSHIQHFIYLIQNKHKVTPKIIRSDNGHVFL---- 574
Query: 573 GSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLW 632
+ F GI+ Q + TP N
Sbjct: 575 ---------LSAFYASQGIIHQRSCVETPQHN---------------------------- 597
Query: 633 GEALKTTAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSK 691
+L+NR+P+ + K+PY++ P + V+GC A + + TKL S+
Sbjct: 598 -------VFLINRVPTLVLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSR 650
Query: 692 TISSYFVGYSERSRGYNFYNPTSRTFFETRIATFFEDV 729
S F+GY +G Y+ ++ F +R TF E +
Sbjct: 651 ARKSVFLGYKSGYKGSFLYDLNTKEIFMSRNVTFHESI 688
>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
EGN_Mt090430 20090702
Length = 532
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 162/426 (38%), Gaps = 65/426 (15%)
Query: 12 LEGSNFESWKSDIMIFLGCMDLDLAFRMDEPAPLTDTSTDIQRV---QYKKWERSNRLGL 68
+G NF W + L + + LTD D + Q +KW +N++
Sbjct: 44 FKGQNFRRWNERVFTLLDVHGV--------ASVLTDVKPDEAKSDAKQIEKWNNANKVCR 95
Query: 69 MIMQKGVPEHVRDSVSAEKNNAQNYLAELERAYVKNDKAEVGTLLGKLTSMKFAGNGGVR 128
+ + + + D + K + D V + T KF N
Sbjct: 96 HTILSTISDALFDVYCSYKVAKDIW-----------DNMNVKYTAEEATKQKFVIN---- 140
Query: 129 EHILSMSQIAKRLKALGMALPDDLLVHLVMNSLPSQYGQIRTFYNCQPNKWTLNELISHC 188
Q+ + LKA + LPD + ++ LPS + + + + +LN+LI H
Sbjct: 141 ----EYHQLIEELKAENIILPDVFVAAALVEKLPSSWDDYKQQLKHKHKQMSLNDLIRHI 196
Query: 189 VDEEEKMNSNKRESAHFISS-AGKGKNKKRKRPSAKTVEKAIEKPAAATAVDPVQKKPYV 247
+ E+ A + S A +N RK+ ++ K A V K +
Sbjct: 197 IIEDTSRKECGAARAKALESRANLIQNNARKQ------QRYENKSDHALKVTNPNFKANL 250
Query: 248 PKCFFCGKTDHLRKDC---------PKFAIXLTK-------KGKCLVLVCCEVNLTSAPK 291
+C+ CGK H C PK LT+ + V +V+L + +
Sbjct: 251 GECYVCGKKGHKAYHCRYRKVNGQPPKPKANLTQGDDKKYDDDDVIAAVISKVHLVNDVQ 310
Query: 292 NTYWVDSGATAHISVSLQGCLNYRKPTDGERYIYVGNGDLVEVEAIGHFRLCLSTGYFLD 351
+ VDSGAT HI + +Y D E +Y+G+ V G L L++G L
Sbjct: 311 -KWVVDSGATRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGKTLA 369
Query: 352 LIDTFVIPSFRRNLISVSFLDKSGFHCSFGDSVFTLSMNSKVLGTG-C----------LN 400
L D +P+ R NLISV+ L+K G SF +S N+ +G G C N
Sbjct: 370 LSDVLNVPTIRTNLISVALLNKVGVKVSFESDKMVMSKNNVFVGNGYCDQGLFVLSSFAN 429
Query: 401 ECDNLY 406
E D LY
Sbjct: 430 EPDELY 435
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 469 SCIECIKGKQTKQ--KRLGAIRSSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSCYG 526
SC C+ GK ++ K +R+ +VL ++H+DI GP + +G RYFI+F+D+YS
Sbjct: 14 SCNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDEYSKML 73
Query: 527 YLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFL 586
+LYLI KS++L+VFK +K E Q G K+K + + GGEY K F +
Sbjct: 74 WLYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSK----------DFESYC 123
Query: 587 QECGIVPQYTMPGTP 601
GI+ + T P TP
Sbjct: 124 TNQGIIHEVTTPYTP 138
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 92/179 (51%), Gaps = 15/179 (8%)
Query: 489 SSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEV 548
S NV+ I I GP +A+ +G RYF++ +DD++ + ++ L+ K+E K++ +
Sbjct: 511 SCNVVS-ISNYIWGPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMI 569
Query: 549 ENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSE 608
+N K +R+D G E+ F GI+ Q + TP NG E
Sbjct: 570 QNHFHTTPKFIRTDNGPEFM-------------LPSFYASHGIIHQKSCVETPQQNGRVE 616
Query: 609 RRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAVA-KTPYELWTGRKPSL 666
R+++ ++++ R+++ S LP S W A+ +L+NR+P+ + ++PY L + P +
Sbjct: 617 RKHQHILNVGRALLYQSKLPPSFWSYAIHHAVFLINRVPTPLLHNQSPYFLLHHKLPDI 675
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 19/167 (11%)
Query: 1173 RVMRYLQRTKGHMLTYRRSDQLEIIGYTDSDFA-GCQDSRKSTSGYIFLLAGGAISWKSV 1231
RV+ YL+ G L + R L+I GYT++D+A GC+D+R+S S
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSIS---------------- 45
Query: 1232 KQTLVATSTMEAEFVASYEASNQAIWLRNLVTGLRVVGGIKRPLKLYCDSRSAVLFXXXX 1291
+Q S+ EAE+ A A+ + L L+ L+V IK P+ LYCD++SA+
Sbjct: 46 EQCFFCWSSSEAEYRALASATCELQRLTYLLRDLKV-NCIKPPV-LYCDNQSAIYIAANP 103
Query: 1292 XXXXXXKHIEIKFLAVKERVQSGQISLEHIGTNSMIADPLTKAVIPK 1338
KH+EI V+E++Q+G L I + +AD TK+++P+
Sbjct: 104 VFHECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQ 150
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 600 TPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKAV-AKTPYEL 658
TP NGV+ER N+TL++ R M+S+ L + W EA+ TT YL+NR P ++ KT YEL
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYEL 64
Query: 659 WTGRKPSLKHLHVWGCPAEARPYKPNETKLDSK 691
W G+ +L V+GC Y NE KL+ +
Sbjct: 65 WPGKSVDYSNLRVFGCTVY---YHVNEWKLERR 94
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 66/102 (64%)
Query: 973 LVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANAVENCVYHKFSGSRFIFLVLYVDDI 1032
+V L+KS+YGLKQASR WY K +Q ++ +GF+ + ++ ++ S F+ +++YVDD+
Sbjct: 1 MVYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDL 60
Query: 1033 LLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDSS 1074
++A N + K +L + F MKDLG + LG+++ R ++
Sbjct: 61 VIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGAN 102
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 47/252 (18%)
Query: 1025 LVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDSSRGILGLSQKS 1084
+++YV D+++ N LL + L+ F +KDLG + LGI++ + S G L ++Q
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEV-KPQSNGSLLITQSK 59
Query: 1085 YIDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVPYA------SVVGSL 1138
Y+ +L + MQ ++ L +P+ S+L++ + P++ S+V +L
Sbjct: 60 YVRDLLAKTDMQEAKSLPSPMI------------SDLKLSKDGSTPFSDPTLCRSIVRAL 107
Query: 1139 MYVQVCTRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTKGHMLTYRR--SDQLEI 1196
Y ++G L V+R+L+ T L R + L I
Sbjct: 108 QYAN---------LIGPLSN---------------VLRHLKGTLSWGLLVRPIPTYPLSI 143
Query: 1197 IGYTDSDFAGCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAEFVASYEASNQAI 1256
+ Y D+D+ D R S +FL ISW + KQ ++A S+ EAE+ + A ++ +
Sbjct: 144 LAYCDADWGSDPDDR-SVDACVFL-GPNLISWWAKKQAVIARSSTEAEYSSLALAKSELL 201
Query: 1257 WLRNLVTGLRVV 1268
W++ L+V+
Sbjct: 202 WIKTYGARLKVI 213
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 511 GQRYFISFIDDYSCYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGK 570
G RYF+ FIDDYS + ++Y+I + E ++ ++ ++ Q K IK R D EY
Sbjct: 3 GARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEY--- 59
Query: 571 YDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLP 628
R FL E G +++ P T G +ER++R ++D V +M+ ++ P
Sbjct: 60 -------RDSKLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISASCP 110
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 48/201 (23%)
Query: 531 IHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECG 590
+ +S++ FK A +ENQ GKK+K ++ D G E+ F F + G
Sbjct: 1 MKHRSDASKNFKQLNALLENQFGKKVKRLQIDNGLEFCW----------SEFNEFCKTEG 50
Query: 591 IVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTTAYLLNRIPSKA 650
I + + TP N V++R N+TL++ R M+S++ L + WGE
Sbjct: 51 ISRHHMVRNTPQQNSVAKRMNQTLLERARCMLSNAGLTRTFWGE---------------- 94
Query: 651 VAKTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYNFY 710
TG +GC Y+ NE KL+S+ FVGY + + Y +
Sbjct: 95 ---------TG----------FGCTVY---YRVNEGKLESRAKKRVFVGYGDGVKEYRIW 132
Query: 711 NPTSRTFFETRIATFFEDVDF 731
+P+ +R F E V F
Sbjct: 133 SPSENRVILSRNVVFDEIVMF 153
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 1198 GYTDSDFAGCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAEFVASYEASNQAIW 1257
GY+DSD G + R+STSG +F AISW + +Q + A S+ EAE++A A+ QAIW
Sbjct: 15 GYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGTFAACQAIW 74
Query: 1258 LRNLVTGL 1265
L N++ L
Sbjct: 75 LDNVIKEL 82
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 78/135 (57%), Gaps = 13/135 (9%)
Query: 1073 SSRGILGLSQKSYIDKVLKRFGMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVPYA 1132
+S+G++ L Q Y ++LK+F M + ++ I D + + E + + +
Sbjct: 6 NSKGLI-LHQTDYASEILKKFNMLDC---NSTITHADANIIYEVKE---EDEGVDPTMFR 58
Query: 1133 SVVGSLMYVQVC-TRPDISFIVGMLGRYLSNPGMDYWKAAKRVMRYLQRTKGH---MLTY 1188
++GSL Y+ C +RP IS++VG++ R++SNP + +AK+++RY+ T + L
Sbjct: 59 RLIGSLRYL--CQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVV 116
Query: 1189 RRSDQLEIIGYTDSD 1203
+ ++QL++ GY+D+D
Sbjct: 117 QATEQLDMEGYSDAD 131
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 1206 GCQDSRKSTSGYIFLLAGGAISWKSVKQTLVATSTMEAEFVASYEASNQAIWLRNLVTGL 1265
G QD +KST+ Y+F++ ISW S KQ +VA S+ EA++VA+ A+ QA+W+ L+ L
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 1266 RVVGGIKRPLKLYCDSRSAV 1285
+ R +KL D++ A+
Sbjct: 126 NAF-EVDR-IKLLVDNKLAI 143
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%)
Query: 851 MNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQDNVERYKARLVAKGFTQKEGI 910
M + +++ W L L + K IGCKW ++ K +ER+K L+ K +T++EG+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 911 DYIETVSLVSSKDSFRTIMALVANLDLELHQMD 943
+ ++T SLV+ ++++V L Q+D
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 959 MVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANAVENCVYHKFS 1018
M QP FV + VCKL+KS+YGLKQA + W+ + ++ + F+ + ++
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 1019 GSRFIFLVLYVDDILL 1034
+ F + ++YVDDI L
Sbjct: 61 ANTFAYFLVYVDDIPL 76
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 437 LWHRRLGHVSKSRIERLVSDGILDTLDYTGLDSCIECIKGKQTKQK-RLGAIRSSNVLEL 495
LWH+RL H+ + + +L +L + L C CI K++K + + +L+L
Sbjct: 10 LWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPTILDL 69
Query: 496 IHTDICGPFHIAARNGQRYFISFIDDY 522
+H + GP G YF+SFIDD+
Sbjct: 70 VHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 437 LWHRRLGHVSKSRIERLVSDGILDTLDYTGLDSCIECIKGKQTKQK-RLGAIRSSNVLEL 495
LWH+RL H+ + + +L +L + L C CI K++K + + +L+L
Sbjct: 10 LWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPTILDL 69
Query: 496 IHTDICGPFHIAARNGQRYFISFIDDY 522
+H + GP G YF+SFIDD+
Sbjct: 70 VHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 874 KPIGCKWIFKTKRDSQDNVERYKARLVAKGFTQKEGIDYI 913
K +GC+W++K K + +E+YKARLVAKG+TQ EG D++
Sbjct: 12 KIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDFV 51
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 420 VTTRGTKRKLNIDNSAV--LWHRRLGHVSKSRIERLVSDGIL--DTLDYTGLDSCIECIK 475
+T G ID + LWH RLGH+S+ ++ L D +L + GL
Sbjct: 84 LTDYGVVASFEIDQEDMTKLWHMRLGHMSERGMQILAKDNLLYGHKIKDPGLSEHYAF-- 141
Query: 476 GKQTKQKRLGAI-RSSNVLELIHTDICGPFHIAARNGQRYFISFIDDYS 523
GK+ + K L I R+ L+ IH D P + + G +YF+S IDDYS
Sbjct: 142 GKRHRNKFLKVIHRTKGTLDYIHDDCWEPSRVESLGGHKYFLSLIDDYS 190
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 942 MDVKTAFLNGDIDETIYMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFK 994
MDV AFL+GD+ E +YM P F + LVCKL+KS Y LK A + W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSR-LVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr8g096240.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 21119820-21118370 E
EGN_Mt090430 20090702
Length = 93
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 939 LHQMDVKTAFLNGDIDETIYMVQPENFVI-GDPKHLVCKLKKSIYGLKQASRQWYFKFNQ 997
LHQ+D+K AF GD+ E +Y+ P F+ GD V +L K+ Y LKQ+ R W K +
Sbjct: 29 LHQLDIKHAFQFGDVIEKVYIEPPPRFIAQGDLCDFVYRLYKASYNLKQSLRAWSDKVSA 88
Query: 998 VIVSF 1002
V+ F
Sbjct: 89 VLQKF 93