Jatropha Genome Database
- JcCA0028191.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0028191.10 - phase: 1 /pseudo/partial
(322 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g111590.1 SBP chr07_pseudomolecule_IMGAG_V3 26270007-... 207 7e-54
IMGA|Medtr5g048960.1 SBP chr05_pseudomolecule_IMGAG_V3 20837686-... 61 9e-10
IMGA|Medtr3g103970.1 SBP chr03_pseudomolecule_IMGAG_V3 25716488-... 60 1e-09
IMGA|Medtr1g039740.1 SBP chr01_pseudomolecule_IMGAG_V3 9171515-9... 59 3e-09
IMGA|Medtr2g025690.1 SBP chr02_pseudomolecule_IMGAG_V3 6865355-6... 57 1e-08
IMGA|Medtr1g105980.1 SBP chr01_pseudomolecule_IMGAG_V3 21978752-... 57 1e-08
IMGA|Medtr7g133730.1 SBP chr07_pseudomolecule_IMGAG_V3 31375970-... 57 1e-08
IMGA|Medtr3g150760.1 SBP chr03_pseudomolecule_IMGAG_V3 39775701-... 54 8e-08
IMGA|Medtr7g041150.1 SBP chr07_pseudomolecule_IMGAG_V3 10487137-... 54 9e-08
IMGA|Medtr2g017680.1 SBP chr02_pseudomolecule_IMGAG_V3 4460201-4... 54 1e-07
IMGA|Medtr8g005760.1 SBP chr08_pseudomolecule_IMGAG_V3 432771-43... 51 8e-07
>IMGA|Medtr7g111590.1 SBP chr07_pseudomolecule_IMGAG_V3
26270007-26266156 E EGN_Mt090430 20090702
Length = 411
Score = 207 bits (526), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/258 (48%), Positives = 161/258 (62%), Gaps = 39/258 (15%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNRGGGFLVDF 129
RFHQL EFDQGKRSCRRRLAGHNERRRKPPP S+L+SR+ RLSS+++ +S+RGG FL++F
Sbjct: 188 RFHQLAEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRFARLSSSVFGNSDRGGSFLMEF 247
Query: 130 SAYSRLSGRDAWPTGRSSERSPVNQTASTGRSIPHPWQNSSQNPPSNLYLQXXXXXXXXX 189
++ + S R+ SP NQT + G PW ++++P SNL+LQ
Sbjct: 248 ASNPKHSLRN----------SPGNQTTAIGW----PWPGNTESPSSNLFLQGSVGGTSFP 293
Query: 190 XXXXIPSGECFTGVGIADSSCALSLLSNQPWGSRNQEPGLGVNT----QGAPMAQ-STAP 244
P E +TGV DS+CALSLLSNQ WGS+N EP G+N G PM Q T+
Sbjct: 294 GARHPPE-ETYTGV--TDSNCALSLLSNQTWGSQNTEPSPGLNNMLNFNGTPMTQLGTSS 350
Query: 245 HGAAVNQYSNPSWGFKGSEASSSSHEMCPDLGLGQISQPLNSHFSGELELSQQNRRQYME 304
HG A++Q N ++E+ PDLG G I PL S SGEL+L QQ RR YM+
Sbjct: 351 HGVAMHQIPN-------------NYEVVPDLGRGHILHPLGSQHSGELDLLQQGRRHYMD 397
Query: 305 LDHSRAFDSSTHHIHWSL 322
++HSRA++SS WSL
Sbjct: 398 VEHSRAYESS----QWSL 411
>IMGA|Medtr5g048960.1 SBP chr05_pseudomolecule_IMGAG_V3
20837686-20832720 E EGN_Mt090430 20090702
Length = 503
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSS 113
RFH + EFD GKRSCRRRLAGHNERRRKP + S ++ L S
Sbjct: 227 RFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQS 270
>IMGA|Medtr3g103970.1 SBP chr03_pseudomolecule_IMGAG_V3
25716488-25712514 E EGN_Mt090430 20090702
Length = 448
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNRGGGFLVDF 129
RFH L EFD KRSCRRRL+ HN RRRKP P +V + LSS+ YD G F
Sbjct: 212 RFHDLSEFDDKKRSCRRRLSDHNARRRKPQPEAV-KLNPSALSSSPYDGRQAMGPF---- 266
Query: 130 SAYSRLSGRDAWP 142
A+ + + AWP
Sbjct: 267 -AFPKNTSNLAWP 278
>IMGA|Medtr1g039740.1 SBP chr01_pseudomolecule_IMGAG_V3
9171515-9165499 E EGN_Mt090430 20090702
Length = 1003
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 27/34 (79%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSV 103
RFH L EFD+GKRSCRRRLAGHN RRRK P V
Sbjct: 150 RFHPLVEFDEGKRSCRRRLAGHNRRRRKTQPDEV 183
>IMGA|Medtr2g025690.1 SBP chr02_pseudomolecule_IMGAG_V3
6865355-6872772 E EGN_Mt090430 20090702
Length = 742
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNRGGGFLVDF 129
+FH L +FD+GKRSCRR+L HN RRR+ S + + T D SN G +D+
Sbjct: 133 KFHVLSDFDEGKRSCRRKLERHNTRRRRKAVDSAVGVDNEVQTVTQNDDSNCDGELGIDY 192
Query: 130 SAYSR 134
S SR
Sbjct: 193 SNLSR 197
>IMGA|Medtr1g105980.1 SBP chr01_pseudomolecule_IMGAG_V3
21978752-21986357 E EGN_Mt090430 20090702
Length = 1003
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSV 103
RFH L EFD+GKRSCRRRLAGHN+RRRK +V
Sbjct: 193 RFHILEEFDEGKRSCRRRLAGHNKRRRKTNQEAV 226
>IMGA|Medtr7g133730.1 SBP chr07_pseudomolecule_IMGAG_V3
31375970-31373239 E EGN_Mt090430 20090702
Length = 259
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSV 103
RFH L EFD+GKRSCRRRLAGHN+RRRK +V
Sbjct: 191 RFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAV 224
>IMGA|Medtr3g150760.1 SBP chr03_pseudomolecule_IMGAG_V3
39775701-39772495 E EGN_Mt090430 20090702
Length = 376
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPP 100
RFH L +FD+ KRSCR+RL GHN RRRKP P
Sbjct: 144 RFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 174
>IMGA|Medtr7g041150.1 SBP chr07_pseudomolecule_IMGAG_V3
10487137-10487936 H EGN_Mt090430 20090702
Length = 121
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 25/33 (75%)
Query: 71 FHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSV 103
FH + EFD KRSCRRRLAGHNERRRK SV
Sbjct: 3 FHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSV 35
>IMGA|Medtr2g017680.1 SBP chr02_pseudomolecule_IMGAG_V3
4460201-4463064 E EGN_Mt090430 20090702
Length = 143
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPP 99
RFH++ EFD KRSCRRRLAGHNERRRK
Sbjct: 110 RFHEVSEFDDLKRSCRRRLAGHNERRRKSA 139
>IMGA|Medtr8g005760.1 SBP chr08_pseudomolecule_IMGAG_V3
432771-430419 E EGN_Mt090430 20090702
Length = 327
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRK 97
RFH L EFD GKRSCR+RLA HN RRRK
Sbjct: 233 RFHLLSEFDNGKRSCRKRLADHNRRRRK 260