Jatropha Genome Database

JcCA0025111.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0025111.30 + phase: 0 
         (157 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g083450.1 Transcription factor, K-box chr07_pseudomol...    54   2e-08

>IMGA|Medtr7g083450.1 Transcription factor, K-box
           chr07_pseudomolecule_IMGAG_V3 17811872-17810220 F
           EGN_Mt090430 20090702
          Length = 115

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%)

Query: 37  VKKIEHLETAKRKXXXXXXXXXXXXXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKE 96
           +KKIE LE +KRK                      +SVS +RARKNQ +K QI++L+EKE
Sbjct: 1   MKKIELLEASKRKLMGEGLGSCSLDELQQIEQQLEKSVSVVRARKNQAYKHQIDQLKEKE 60

Query: 97  RLLAAENARLS 107
           + L AENARLS
Sbjct: 61  KNLVAENARLS 71