Jatropha Genome Database

JcCA0022221.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0022221.40 - phase: 0 /pseudo/partial
         (124 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g064830.1 Copper-resistance protein CopA chr07_pseudo...    61   2e-10
IMGA|Medtr7g064780.1 Copper-resistance protein CopA chr07_pseudo...    59   7e-10
IMGA|Medtr7g067600.1 Cupredoxin chr07_pseudomolecule_IMGAG_V3 13...    58   1e-09
IMGA|Medtr4g084160.1 Copper-resistance protein CopA chr04_pseudo...    54   3e-08

>IMGA|Medtr7g064830.1 Copper-resistance protein CopA
           chr07_pseudomolecule_IMGAG_V3 13175148-13177593 E
           EGN_Mt090430 20090702
          Length = 558

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/28 (96%), Positives = 28/28 (100%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNTSVEL+MQDTSILGAESHPLHL
Sbjct: 436 VVLPFNTSVELVMQDTSILGAESHPLHL 463


>IMGA|Medtr7g064780.1 Copper-resistance protein CopA
           chr07_pseudomolecule_IMGAG_V3 13151601-13159021 E
           EGN_Mt090430 20090702
          Length = 605

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/27 (96%), Positives = 27/27 (100%)

Query: 2   VLPFNTSVELIMQDTSILGAESHPLHL 28
           VLPFNTSVEL+MQDTSILGAESHPLHL
Sbjct: 484 VLPFNTSVELVMQDTSILGAESHPLHL 510


>IMGA|Medtr7g067600.1 Cupredoxin chr07_pseudomolecule_IMGAG_V3
           13703995-13708069 E EGN_Mt090430 20090702
          Length = 581

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/28 (89%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNTSVEL++QDTSILG ESHPLHL
Sbjct: 459 VVLPFNTSVELVLQDTSILGVESHPLHL 486


>IMGA|Medtr4g084160.1 Copper-resistance protein CopA
           chr04_pseudomolecule_IMGAG_V3 17613557-17610112 E
           EGN_Mt090430 20090702
          Length = 581

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/28 (78%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VV+P+NT V++I+QDTSILGAESHPLHL
Sbjct: 459 VVIPYNTRVQVILQDTSILGAESHPLHL 486