Jatropha Genome Database

JcCA0020841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020841.10 + phase: 0 /partial
         (79 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g149470.1 Glutamate--cysteine ligase, plant chr04_pse...   136   2e-33
IMGA|Medtr5g010350.3 Glutamate--cysteine ligase, GCS2 chr05_pseu...   105   4e-24
IMGA|Medtr5g010350.1 Glutamate--cysteine ligase, GCS2 chr05_pseu...   105   5e-24
IMGA|Medtr5g010340.1 Glutamate--cysteine ligase, GCS2 chr05_pseu...   101   1e-22

>IMGA|Medtr4g149470.1 Glutamate--cysteine ligase, plant
           chr04_pseudomolecule_IMGAG_V3 37162522-37169667 F
           EGN_Mt090430 20090702
          Length = 508

 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 1   VPVTGLKTPFRDGLLRHVAEDVLQLAKDGLQRRGFKEVGFLNEVAEVVRTGVTPAEKLLE 60
           V VTGLKTPFRDGLL+HVAE+VL+LAKDGL+RRGFKE GFLN VAEVVRTGVTPAE+LLE
Sbjct: 430 VTVTGLKTPFRDGLLKHVAEEVLELAKDGLERRGFKESGFLNAVAEVVRTGVTPAERLLE 489

Query: 61  LYNGKWGQSVDPVFEELLY 79
           LY+GKW QSVD VF+ELLY
Sbjct: 490 LYHGKWEQSVDHVFDELLY 508


>IMGA|Medtr5g010350.3 Glutamate--cysteine ligase, GCS2
           chr05_pseudomolecule_IMGAG_V3 2518866-2520650 E
           EGN_Mt090430 20090702
          Length = 165

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 60/79 (75%)

Query: 1   VPVTGLKTPFRDGLLRHVAEDVLQLAKDGLQRRGFKEVGFLNEVAEVVRTGVTPAEKLLE 60
           VP TGLKTPF+  LL+HVAEDVL+ AKDGL RR   E  FL+ + EVV TG+TPAEKLLE
Sbjct: 87  VPFTGLKTPFQGRLLQHVAEDVLKWAKDGLDRRCLNESIFLDPLIEVVGTGMTPAEKLLE 146

Query: 61  LYNGKWGQSVDPVFEELLY 79
           +YN KWG ++D VF E  Y
Sbjct: 147 MYNNKWGSNIDSVFRECCY 165


>IMGA|Medtr5g010350.1 Glutamate--cysteine ligase, GCS2
           chr05_pseudomolecule_IMGAG_V3 2517014-2520650 E
           EGN_Mt090430 20090702
          Length = 512

 Score =  105 bits (262), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 60/79 (75%)

Query: 1   VPVTGLKTPFRDGLLRHVAEDVLQLAKDGLQRRGFKEVGFLNEVAEVVRTGVTPAEKLLE 60
           VP TGLKTPF+  LL+HVAEDVL+ AKDGL RR   E  FL+ + EVV TG+TPAEKLLE
Sbjct: 434 VPFTGLKTPFQGRLLQHVAEDVLKWAKDGLDRRCLNESIFLDPLIEVVGTGMTPAEKLLE 493

Query: 61  LYNGKWGQSVDPVFEELLY 79
           +YN KWG ++D VF E  Y
Sbjct: 494 MYNNKWGSNIDSVFRECCY 512


>IMGA|Medtr5g010340.1 Glutamate--cysteine ligase, GCS2
           chr05_pseudomolecule_IMGAG_V3 2511663-2513601 F
           EGN_Mt090430 20090702
          Length = 139

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 60/79 (75%)

Query: 1   VPVTGLKTPFRDGLLRHVAEDVLQLAKDGLQRRGFKEVGFLNEVAEVVRTGVTPAEKLLE 60
           VP TGLKT F+  LL+HVAEDVL+ AK GL+RR   E  FL+ + EVV TG+TPA+KLLE
Sbjct: 61  VPFTGLKTLFQGRLLQHVAEDVLKWAKAGLERRCLNESIFLDPLIEVVGTGMTPADKLLE 120

Query: 61  LYNGKWGQSVDPVFEELLY 79
           +YN KWG ++DPVF E  Y
Sbjct: 121 MYNKKWGSNIDPVFRECCY 139