Jatropha Genome Database
- JcCA0020831.40
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0020831.40 + phase: 2 /TE
(1057 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 1047 0.0
IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H... 432 e-121
IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 368 e-102
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 340 3e-93
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 313 2e-85
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 227 2e-59
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 217 3e-56
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 216 7e-56
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 181 1e-45
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 179 5e-45
IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse transc... 156 4e-38
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 147 2e-35
IMGA|Medtr6g077300.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V... 145 1e-34
IMGA|Medtr5g105390.1 Polynucleotidyl transferase, Ribonuclease H... 142 7e-34
IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse transc... 138 1e-32
IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61 17375... 134 2e-31
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 133 5e-31
IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 127 2e-29
IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein, chr0... 118 1e-26
IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H... 116 6e-26
IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87... 111 2e-24
IMGA|Medtr6g077290.1 Ribonuclease H, putative chr06_pseudomolecu... 102 7e-22
IMGA|Medtr4g047400.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V... 91 4e-18
IMGA|Medtr4g047190.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V... 91 4e-18
IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 ... 85 2e-16
IMGA|Medtr4g047410.1 gag-pol polyprotein, putative chr04_pseudom... 83 8e-16
IMGA|Medtr4g047200.1 gag-pol polyprotein, putative chr04_pseudom... 83 8e-16
IMGA|Medtr3g068370.1 Polynucleotidyl transferase, Ribonuclease H... 73 8e-13
IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcrip... 72 1e-12
IMGA|Medtr6g028320.1 Polynucleotidyl transferase, Ribonuclease H... 70 6e-12
IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H... 69 1e-11
IMGA|Medtr2g120570.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V... 65 1e-10
IMGA|Medtr6g008710.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V... 60 4e-09
IMGA|Medtr4g073750.1 Polynucleotidyl transferase, Ribonuclease H... 59 1e-08
IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse transcrip... 57 4e-08
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch... 55 2e-07
IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse transc... 54 3e-07
IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fo... 54 4e-07
IMGA|Medtr1g107950.1 gag-pol polyprotein, related chr01_pseudomo... 53 9e-07
IMGA|Medtr1g107770.1 gag-pol polyprotein, related chr01_pseudomo... 53 9e-07
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 52 2e-06
IMGA|Medtr6g077110.1 hypothetical protein chr06_pseudomolecule_I... 52 2e-06
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 50 4e-06
IMGA|Medtr6g059710.1 GAG-POL precursor, putative chr06_pseudomol... 50 4e-06
IMGA|Medtr3g059230.1 gag-pol polyprotein, putative chr03_pseudom... 50 5e-06
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/989 (51%), Positives = 689/989 (69%), Gaps = 30/989 (3%)
Query: 71 KFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEM 130
+F+ P + +ANIVPVPKKDGKVRM VD+RDLNKA PKD+FPLPHID+LVD A ++
Sbjct: 132 RFVAPSS--DSVANIVPVPKKDGKVRMSVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKV 189
Query: 131 VSLTDLAVGYNQIMMHLPDKEKTVFIPEWGTYCYKVMPFGLKNAGATYQRMATTIFHDMI 190
S D GYNQI M D+EKT FI WGT+CYKVMPFGL NAGATYQR TT+FHDMI
Sbjct: 190 FSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMI 249
Query: 191 HKEVEVYVDDMVVKSKTAEEHTTALEKFFLRL*KYNLKLNPAKCLFGATSGVFLRHMVSR 250
HKEVEVYVDDM+VKS E+H L K F RL KY L+LNP KC FG SG L +VS+
Sbjct: 250 HKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 309
Query: 251 KGIEIDPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIK 310
KGIE+DP K +AI EMPAP+++K+VRGFLGRL YISRFI+ + TCGPIFKLLRK +
Sbjct: 310 KGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVV 369
Query: 311 WNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQAEDTRVENVVY 370
WN++CQ+AFD +K YLL PPIL PP G+PL++YL+V +E+MG +L QQ E + E+ +Y
Sbjct: 370 WNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIY 429
Query: 371 YLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPVLDSK 430
YLSK+ D E +Y +EK C AL WA +L+HYL ++TT++IS +P+K++ E+ + K
Sbjct: 430 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 489
Query: 431 MAKWVSVLAAYGLKFVQRKAVKGGALADQLAELPVEDQMP-EVEFPDEDLLSLESE---- 485
+A+W +L+ Y + F +KA+KG LAD LA P++D P E +FPDE+++ L+S+
Sbjct: 490 IARWQMLLSEYYIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 549
Query: 486 -----------VWEMYFDGASNYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEAC 534
W + FDGA N +G G+G V +P G +IP ++ F CTNN AEYEAC
Sbjct: 550 PLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 609
Query: 535 IKGLEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHY 594
I G+E A++ IK L ++GDS L+++Q +W+ +L+PY L F + H+
Sbjct: 610 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 669
Query: 595 LPRAKNQFADALATLASMVNVGGDQVIRPLTVRLQKQSAYVM-----------NLVDDKP 643
+PR +NQ ADALATL+SM V + + V+ ++ ++V N+VD KP
Sbjct: 670 IPRDENQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKP 729
Query: 644 WFWDIQNYLQYEAYPEGSSKTDQRTLRQLASGYFITRGVLYKRSWNGLHLRCVEEGEAQA 703
W++DI+ +L YP G+SK D++TLR+LAS + + +LYKR+++ + LRCV+E EA+
Sbjct: 730 WYYDIKQFLLSREYPSGASKQDKKTLRRLASRFLLNGDILYKRNYDMVLLRCVDEHEAEQ 789
Query: 704 IMDSLHNGESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVN 763
+M +H+G G H G ++RK++ GYYW M DC ++A KCH+CQI+A PP
Sbjct: 790 LMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHA 849
Query: 764 LNPIASPWRFATWGIDVIGKVHPKASNGHQFILVAVDYFTKWIEATSYSVLNAKKAAQFV 823
LN I+SPW F+ WGID+IG++ PKASNGH+FILVA+DYFTKW+EA SY+ + + A+F+
Sbjct: 850 LNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVAKFI 909
Query: 824 RTNILCRYGTPFEIVTDNGSHFQSE-FSDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIK 882
+ NI+CRYG P +I+TDNG++ + L ++ KI+HH SSPYRPQ NGAVEAANK IK
Sbjct: 910 KNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIK 969
Query: 883 VILQKMVQKHKAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSVRIIR 942
I+QKMV +K WHE LP AL GYRT++R+ TGATP+SLVYGMEAVLP+E+E+ S+R+I
Sbjct: 970 RIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIM 1029
Query: 943 ESQISEADWAENYHLQLLGMDEKRLRAIHQTQVYQRRMARHFNKKVKDRKLEEGCLVLKE 1002
E+++SEA+W ++ + QL ++EKR+ A+ + Q YQ RM F+KKV R+ + G LVLK
Sbjct: 1030 EAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKR 1089
Query: 1003 IRQPIIDPRGKFRPHWAGPYVLKKILSGG 1031
DPR K+ P++ GPYV+KK SGG
Sbjct: 1090 RVSQQPDPRDKWTPNYEGPYVVKKAFSGG 1118
>IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H fold
chr06_pseudomolecule_IMGAG_V3 15275871-15277296 E
EGN_Mt090430 20090702
Length = 445
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/404 (51%), Positives = 287/404 (71%), Gaps = 17/404 (4%)
Query: 637 NLVDDKPWFWDIQNYLQYEAYPEGSSKTDQRTLRQLASGYFITRGVLYKRSWNGLHLRCV 696
N+VD +PW++DI+ +L YP G+SK D++TLR+LA + + +LYKR+++ + LRCV
Sbjct: 37 NVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCV 96
Query: 697 EEGEAQAIMDSLHNGESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKL 756
+E EA+ +M +H+G G H G ++RK++ GYYW TM DC ++A KCH+CQI+A
Sbjct: 97 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADK 156
Query: 757 QRRPPVNLNPIASPWRFATWGIDVIGKVHPKASNGHQFILVAVDYFTKWIEATSYSVLNA 816
PP LN ++SPW F+ WGID+IG++ PKASNGH+FILVA+DYFTKW
Sbjct: 157 IHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKW----------- 205
Query: 817 KKAAQFVRTNILCRYGTPFEIVTDNGSHFQSEF-SDLLKQKKIQHHKSSPYRPQTNGAVE 875
F++ NI+CRYG P +I+TDNG++ + L ++ KI+HH SSPYRPQ NGAVE
Sbjct: 206 -----FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVE 260
Query: 876 AANKAIKVILQKMVQKHKAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEV 935
AANK IK I+QKMV +K WHE LP AL GYRT++R+ TGATP+SLVYGMEAVLP+E+E+
Sbjct: 261 AANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 320
Query: 936 QSVRIIRESQISEADWAENYHLQLLGMDEKRLRAIHQTQVYQRRMARHFNKKVKDRKLEE 995
S+R+I E+++SEA+W ++ + QL ++EKR+ A+ + Q YQ RM F+KKV R+ +
Sbjct: 321 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKV 380
Query: 996 GCLVLKEIRQPIIDPRGKFRPHWAGPYVLKKILSGGAVILTDLG 1039
G LVLK DPRGK+ P++ GPYV+KK SGGA+ILT G
Sbjct: 381 GELVLKRRVSQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHRG 424
>IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
13291307-13288982 H EGN_Mt090430 20090702
Length = 695
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 228/749 (30%), Positives = 385/749 (51%), Gaps = 101/749 (13%)
Query: 247 MVSRKGIEIDPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKG 306
M++R+G+E++P K KAI++M +P KEV+ GR+ ++RF++ AD P F+LL K
Sbjct: 1 MLTRRGVEVNPEKCKAIMDMRSPTDAKEVQKLTGRIASLTRFLSCSADKNLPFFQLLPKN 60
Query: 307 VAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQAEDTRVE 366
W E+C+ AF ++K++L +PPIL P+L PL+LYL+V+E A + L Q+ + +
Sbjct: 61 ENFCWTEECEGAFQKLKEFLTTPPILVKPKLSAPLILYLAVSEHACSSALVQEVR--KEQ 118
Query: 367 NVVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPV 426
VY+ SK + E++Y KIEK+ LALV + KL+ Y S+T ++ + P++ ++++P
Sbjct: 119 KPVYFTSKVLHGAEVRYQKIEKVALALVSSARKLRPYFQSHTI-IVRTNQPIRQVLQKPD 177
Query: 427 LDSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLAELPVEDQMPEVEFPDEDLLSLESEV 486
L +M + +E+
Sbjct: 178 LAGRMIE-----------------------------------------------CMEAAK 190
Query: 487 WEMYFDGASNYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKGLEAALEKGI 546
W + DG+SN G+G GV + P G I +++ DF +NN+AEYEA G+ AL+ +
Sbjct: 191 WVLSVDGSSNLKGSGAGVTLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMRLALKVVV 250
Query: 547 KILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPRAKNQFADAL 606
K L+ DS L+ Q ++ K+ +L+ YL + E +N AD L
Sbjct: 251 KELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVIE----------------QNGRADLL 294
Query: 607 ATLASMVNVGGDQVIRPLTVRLQ--KQSAYVMNLVDDKPWFWDIQNYLQYEAYP---EGS 661
A LAS G ++ + T++ +Q ++ D K W I YL+ + P E +
Sbjct: 295 AKLASTKRQGNNRSVIQETLKQPSIEQKEFLFLTEDFKSWMGHIIRYLKDDQLPMEEEQA 354
Query: 662 SKTDQRTLRQLASGYFITRGVLYKRSWNGLHLRCVEEGEAQAIMDSLHNGESGPHMHGIA 721
SK +R ++ + Y L+ R ++ HL+C+ +A+ ++ + G G H+ G A
Sbjct: 355 SKVKKRAIKFVVIAY-----QLFIRGFSSPHLKCLAPQQAEYVIAEVDEGVCGTHIGGRA 409
Query: 722 LARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVNLNPIASPWRFATWGIDVI 781
LA K++ GYYW TM DC ++ KC + + SPW F WG+D++
Sbjct: 410 LAAKVLRAGYYWPTMKEDCSKYVKKC-----------------DKLISPWPFFKWGVDIL 452
Query: 782 GKVHPKASNGHQFILVAVDYFTKWIEATSYSVLNAKKAAQFVRTNILCRYGTPFEIVTDN 841
G P A +F++VAVDYFTKWIE + + A + +F I+C +G P +VTD
Sbjct: 453 GP-FPLAQGQLKFLIVAVDYFTKWIEVELVATITADRIKKFYWKKIICNFGLPAVLVTDK 511
Query: 842 GSHF-QSEFSDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKMVQKHKA-WHEQL 899
G+ + S ++ K+ I+ + + PQ+NG E+ANK I L+K ++ K W E+L
Sbjct: 512 GTQYASSSMANFCKEWGIKLNFTLVKHPQSNGQAESANKVILQGLKKRLEAAKGLWVEEL 571
Query: 900 PNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSVRII-RESQISEADWAENYHLQ 958
P +W Y T+ + T TP+ +VYG +A++PI++ S R++ + +++ ++ N Q
Sbjct: 572 PMVMWSYHTTPHSSTQETPFRIVYGSDAMIPIQVMEPSARVLFAQEEVNNSNLLNNLDFQ 631
Query: 959 LLGMDEKRLRAIHQTQVYQRRMARHFNKK 987
+E R RA + + +RR + ++ K
Sbjct: 632 ----EEVRARAQVKEEACKRRAEQRYDTK 656
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 340 bits (871), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 191/503 (37%), Positives = 279/503 (55%), Gaps = 34/503 (6%)
Query: 60 IKEEVAKQLENKFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHID 119
+ EEV K ++ +FI I YPTWLAN V V K++GK RMCVDY DLN CPK +PLP+ID
Sbjct: 9 VDEEVKKLVDARFISEIKYPTWLANTVLVKKENGKWRMCVDYTDLNMVCPKYPYPLPNID 68
Query: 120 LLVDRMAGHEMVSLTDLAVGYNQIMMHLPDKEKTVFIPEWGTYCYKVMPFGLKNAGATYQ 179
L+D +G + +S D GYNQI M D KT F+ Y Y+VM FGLKNAGAT+Q
Sbjct: 69 HLIDNASGFKTLSFMDAYSGYNQIRMDPLDAPKTAFMTNTKNYHYEVMYFGLKNAGATFQ 128
Query: 180 RMATTIFHDMIHKEVEVYVDDMVVKSKTAEEHTTALEKFFLRL*KYNLKLNPAKCLFGAT 239
R T F I + EVY+DD+V K+K HT LE+ ++ KY ++LNP KC FG
Sbjct: 129 RSMDTAFSQQIGRNREVYIDDLVAKTKEGLSHTDDLEEILGQVRKYRIRLNPTKCSFGVQ 188
Query: 240 SGVFLRHMVSRKGIEIDPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQLADTCGPI 299
G FL +++R GIE + K +AI+ M +P + KEV+ GRL +SR ++ D
Sbjct: 189 VGKFLGFLLTRWGIEANTDKCQAIINMRSPSNVKEVQQLTGRLAALSRCLSCAGDKAFSF 248
Query: 300 FKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQ 359
F ++K +W +C+ AF ++K +L S P+LQ P + LYL ++E AM +L ++
Sbjct: 249 FASIKKKEKFEWTAECEDAFQQIKMFLSSLPLLQRPNKNAIIFLYLVISENAMSTVLVEE 308
Query: 360 AEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVISESNPLK 419
+E E +YY+S+ +L Y KIE L LA+V KL+ Y S+ V+ + P++
Sbjct: 309 SEVG--EKPIYYVSRVFKGAKLPYQKIECLALAVVTTARKLRPYFQSHKI-VVKSNYPIR 365
Query: 420 FLMERPVLDSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLAEL--PVEDQMPEVEFPDE 477
++ +P L +M +K LAD + EL P++D++P
Sbjct: 366 QVLGKPDLAGRMVA---------------GNIKSQVLADFVVELTSPIQDEVP------- 403
Query: 478 DLLSLESEVWEMYFDGASNYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKG 537
VW + DG+SN +G GV+ + P I +++ +F +NN+ EYEA I G
Sbjct: 404 -------YVWLLSVDGSSNLKDSGAGVILEGPNDLLIEQSLRFEFKASNNQVEYEALIAG 456
Query: 538 LEAALEKGIKILKVFGDSNLIVS 560
+ A E G + L+ DS L+ S
Sbjct: 457 MVLAQEMGAENLRAKSDSQLVTS 479
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 313 bits (803), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/218 (67%), Positives = 170/218 (77%)
Query: 76 IAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTD 135
+ YP W+ANIVPVPKKDGKVRMCVD+RDLNKA PKD+FPLPHID+LVD A ++ S D
Sbjct: 3 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 62
Query: 136 LAVGYNQIMMHLPDKEKTVFIPEWGTYCYKVMPFGLKNAGATYQRMATTIFHDMIHKEVE 195
GYNQI M D+EKT FI WGT+CYKVMPFGL NAGATYQR TT+FHDMIHKEVE
Sbjct: 63 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 122
Query: 196 VYVDDMVVKSKTAEEHTTALEKFFLRL*KYNLKLNPAKCLFGATSGVFLRHMVSRKGIEI 255
VYVDDM+VKS E+H L K F RL KY L+LNP KC FG SG L +VS+KGIE+
Sbjct: 123 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFVVSQKGIEV 182
Query: 256 DPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQLA 293
DP K +AI EMPAP+++K+VRGFLGRL YISRFI+ +
Sbjct: 183 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMT 220
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 234/457 (51%), Gaps = 14/457 (3%)
Query: 6 IMECLKKFADCFMWKASDITGIDPAIAV-HKIPVYPEAKPVKQKLRKLKT*WSLKIKEEV 64
+ + L K++ F A G+ P H IP+ ++ PVK K + +I++ V
Sbjct: 549 LHDLLSKYSSVFQSPA----GLPPCRQQDHAIPLLTDSNPVKVKPYRYAHSQKTQIEKMV 604
Query: 65 AKQLENKFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDR 124
+ L+ I+P + + + ++ V KKDG R C DYR LN KD FP+P +D L+D
Sbjct: 605 LEMLQQGIIQPSSS-PFSSPVLLVKKKDGSWRFCTDYRALNAITVKDSFPIPTVDELLDE 663
Query: 125 MAGHEMVSLTDLAVGYNQIMMHLPDKEKTVFIPEWGTYCYKVMPFGLKNAGATYQRMATT 184
+ G S DL GY+QI++ D+ KT F G Y + VMPFGL NA A++Q +
Sbjct: 664 LFGAAYFSKLDLLSGYHQILVKSEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQNLMNK 723
Query: 185 IFHDMIHKEVEVYVDDMVVKSKTAEEHTTALEKFFLRL*KYNLKLNPAKCLFGATSGVFL 244
+F +++ + V V+ DD++V S T H LE+ L ++L +KC FG T +L
Sbjct: 724 VFCNLLRRSVLVFFDDILVYSPTWHAHLAHLEEVLQLLQTHSLFAKISKCCFGMTQIDYL 783
Query: 245 RHMVSRKGIEIDPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQLADTCGPIFKLLR 304
H VS +G+ +D SK KA+L+ P P + K++RGFLG Y RFI A P+ LL+
Sbjct: 784 GHTVSGQGVAMDCSKVKAVLDWPTPTNLKQLRGFLGLTGYYRRFIQGYAAVASPLTDLLK 843
Query: 305 KGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQAEDTR 364
K + KW E+ Q AF+R+KQ L P+L P K +L + +GA+L+Q
Sbjct: 844 KD-SFKWTENAQLAFERLKQSLTKAPVLSLPDFSKSFVLETDASGFGIGAVLSQG----- 897
Query: 365 VENVVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMER 424
++ + + SK++ K + + A+ A +K +HYL + + ++ LK L ++
Sbjct: 898 -KHPIAFFSKKLSPRMQKQSAYVRELYAISEAISKFRHYLIGHQFIIRTDQKSLKSLTDQ 956
Query: 425 PVLDSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLA 461
+ + W+ Y ++ K K AD L+
Sbjct: 957 AIQTPEQQNWLHKFLGYNFT-IEYKPGKDNIAADALS 992
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 11/243 (4%)
Query: 702 QAIMDSLHNGESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPP 761
+I+ H+ G H GI + ++ ++W ++ D C CQ P
Sbjct: 1059 HSILQEFHSSPLGGH-SGITRTKARISAQFFWPNLHKDVTLFISTCLVCQQAKVATTLPA 1117
Query: 762 VNLNPIASPWRFATW---GIDVIGKVHPKASNGHQFILVAVDYFTKWIEATSY-SVLNAK 817
L P++ P + W +D + + P S+G+ + V +D +K+ T S ++
Sbjct: 1118 GLLQPLSIPSQI--WEDVAMDFVTGLPP--SHGYTVLFVVIDRLSKYCHLTPLKSDYSSL 1173
Query: 818 KAAQFVRTNILCRYGTPFEIVTDNGSHFQSEF-SDLLKQKKIQHHKSSPYRPQTNGAVEA 876
AQ +++ +G P IV+D F S+F L K + SS Y PQ++G EA
Sbjct: 1174 SVAQAFLHSVVKLHGFPRSIVSDRDKVFLSKFWQHLFKLSGTTLNMSSAYHPQSDGQSEA 1233
Query: 877 ANKAIKVILQKMVQKH-KAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEV 935
NK I++ L+ + K+W LP A + Y TS + G TP+ VYG + ++ E+
Sbjct: 1234 LNKCIELYLRCFTADNPKSWFTLLPWAEFWYNTSHHSSIGMTPFRAVYGRDPPQVVKYEI 1293
Query: 936 QSV 938
QS
Sbjct: 1294 QSA 1296
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/147 (69%), Positives = 114/147 (77%)
Query: 76 IAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTD 135
+ YP W+ANIVPVPKKDGKVRMCVD+RDLNKA PKD+FPLPHID+LVD A ++ S D
Sbjct: 3 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 62
Query: 136 LAVGYNQIMMHLPDKEKTVFIPEWGTYCYKVMPFGLKNAGATYQRMATTIFHDMIHKEVE 195
GYNQI M D+EKT FI WGT+CYKVM FGL NAGATYQR TT+FHDMIHKEVE
Sbjct: 63 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVE 122
Query: 196 VYVDDMVVKSKTAEEHTTALEKFFLRL 222
VYVDDM+VKS E+H L K F RL
Sbjct: 123 VYVDDMIVKSTDEEQHVEYLTKMFERL 149
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
20090702
Length = 705
Score = 216 bits (549), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 211/427 (49%), Gaps = 10/427 (2%)
Query: 36 IPVYPEAK-PVKQKLRKLKT*WSLKIKEEVAKQLENKFIEPIAYPTWLANIVPVPKKDGK 94
I +P+AK P+ + K +I+++VA+ L I P + + + ++ V KKD
Sbjct: 143 IEQFPKAKGPINVRPYKYPHHQKEEIEKQVAELLAAGVIRP-SMSAYSSPVILVKKKDKS 201
Query: 95 VRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMHLPDKEKTV 154
RMCVDYR LNKA D +P+P +D L+D + G + S DL GY+QI +H D KT
Sbjct: 202 WRMCVDYRALNKARIPDKYPIPVVDELLDELYGATIFSKIDLKSGYHQIRVHENDIHKTA 261
Query: 155 FIPEWGTYCYKVMPFGLKNAGATYQRMATTIFHDMIHKEVEVYVDDMVVKSKTAEEHTTA 214
F G Y Y VMPFGL NA AT+Q IF + K V V+ DD+++ SK EH +
Sbjct: 262 FRTHNGHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILIYSKDLAEHQSH 321
Query: 215 LEKFFLRL*KYNLKLNPAKCLFGATSGVFLRHMVSRKGIEIDPSKAKAILEMPAPKSKKE 274
L + L N +KC FG +L H++S KG+ +DP K + ILE P PK+ K
Sbjct: 322 LNQVLTILFSNCFVANLSKCKFGCVEVDYLGHVISGKGVAVDPEKIRCILEWPEPKNVKG 381
Query: 275 VRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQP 334
VRGFLG Y +F+ P+ +L +K W+ +AF+R+K + SP +L
Sbjct: 382 VRGFLGLTGYYRKFVKDYGKIAKPLTELTKKD-GFSWSPTAAEAFNRLKHIMTSPLVLVL 440
Query: 335 PRLGKPLLLYLSVTEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALV 394
P P + +GA+L Q + V Y SK + L + EK +ALV
Sbjct: 441 PNFSLPFEIECDAAGRGIGAVLMQNKQP------VAYFSKALSAGNLSKSVYEKELMALV 494
Query: 395 WACTKLQHYLSSYTTYVISESNPLKFLMERPVLDSKMAKWVSVLAAYGLKFVQRKAVKGG 454
+HYL V ++ LK +++ V W++ L Y + + ++
Sbjct: 495 LCIQHWRHYLLGKAFTVHTDHKSLKHFLQQRVTSPDQQCWLAKLLGYQFEVKYKPGLENK 554
Query: 455 ALADQLA 461
A AD L+
Sbjct: 555 A-ADALS 560
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/434 (28%), Positives = 201/434 (46%), Gaps = 22/434 (5%)
Query: 34 HKIPVYPEAKPVKQKLRKLKT*WSLKIKEEVAKQLENKFIEPIAYPTWLANIVPVPKKDG 93
H IP+ P PV K + + + L + I P P + + ++ V KKDG
Sbjct: 562 HHIPLLPNTPPVNVKPYRYPHSQKEAMTTIIHDMLHDGIIVPSTSP-YSSPVLLVRKKDG 620
Query: 94 KVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMHLPDKEKT 153
R CVDYR LN D FP+P ID L D + + S TDL GY+QI + D KT
Sbjct: 621 SWRFCVDYRALNAVTICDRFPIPTIDELFDELGSASLFSKTDLRSGYHQIRVVPEDTHKT 680
Query: 154 VFIPEWGTYCYKVMPFGLKNAGATYQRMATTIFHDMIHKEVEVYVDDMVVKSKTAEEHTT 213
F G Y + VMPFGL NA +T+Q + +D + ++ ++ ++H
Sbjct: 681 TFRTFDGHYEFLVMPFGLSNAPSTFQ----SAMNDFLRP---------YLRRRSLDDHLI 727
Query: 214 ALEKFFLRL*KYNLKLNPAKCLFGATSGVFLRHMVSRKGIEIDPSKAKAILEMPAPKSKK 273
L L ++ +KC+F + +L H++S KG++ D K +AIL P P+S
Sbjct: 728 HLRLILDLLASHHFVAKMSKCVFAVDTIDYLGHIISHKGVQPDEDKIQAILSWPTPRSLT 787
Query: 274 EVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQ 333
+RGFLG + + RF+ A P+ LLR N + AF ++K+ + + P+L
Sbjct: 788 TLRGFLGLISFYRRFVRHYATLAAPLTDLLR-STKFTLNATAEAAFSKLKEQITTTPVLI 846
Query: 334 PPRLGKPLLLYLSVTEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLAL 393
P K ++ + A+GA+L+Q+ + + SK+M + + + A+
Sbjct: 847 LPNFSKLFVVETDASAVAIGAVLSQEGPP------LAFFSKKMCNRMQSSSVYVREMYAI 900
Query: 394 VWACTKLQHYLSSYTTYVISESNPLKFLMERPVLDSKMAKWVSVLAAYGLKFVQRKAVKG 453
A K YL ++ ++ LK L+ + + + KWVS L + +F + K
Sbjct: 901 TEAIKKWHQYLIGRHFHIYTDQKSLKNLLVQTIQTPEQQKWVSKLQGFNFEFFYKPG-KA 959
Query: 454 GALADQLAELPVED 467
+AD L+ E+
Sbjct: 960 NQVADALSRRTSEE 973
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 107/453 (23%), Positives = 167/453 (36%), Gaps = 62/453 (13%)
Query: 589 DLSFHYLPRAKNQFADALATLASMVNVGGDQVIRPLTVRLQKQSAYVMNLVDDKPWFWDI 648
+ F Y P NQ ADAL+ S + V P+ V LQ+ +
Sbjct: 949 NFEFFYKPGKANQVADALSRRTSEESTLILAVSSPIPVLLQQLRDF-------------- 994
Query: 649 QNYLQYEAYPEGSSKTDQRTLRQLASGYFITRGVLYKRSWNGLHLRCVEEGEAQAIMDSL 708
Y P G Q Q + F T LR V E + S
Sbjct: 995 -----YTTDPTGQQLLQQHKESQNENQNFRTP------------LRDVMLTEYHSTPSSG 1037
Query: 709 HNGESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVNLNPIA 768
++G LAR ++ + W + AD C CQ + + L+P+
Sbjct: 1038 YSGVQP------TLAR--ISASFSWPGIYADVKSFVRTCQVCQQNKYITTKKQGLLHPLD 1089
Query: 769 SPWRF-ATWGIDVIGKVHPKASNGHQFILVAVDYFTKWIEATSYSV-LNAKKAAQFVRTN 826
P + +D + H S GH I V D TK+ + S A A
Sbjct: 1090 IPEKVREDLSMDFV--THLPNSFGHTTIWVVCDRLTKFAHFIALSAKFTAPDLASRFSVE 1147
Query: 827 ILCRYGTPFEIVTDNGSHFQSEF-SDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVIL 885
I +G P IV+D + F S F +L K + S+ Y P+T+G E N++++ L
Sbjct: 1148 IYRLHGIPKSIVSDRDTLFVSAFWKELFKIQGTTLRFSTAYHPETDGQTEVVNRSLETYL 1207
Query: 886 QKMVQKH-KAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSVRIIRES 944
+ +H K W++ L A Y +S + TP+ +YG + ++
Sbjct: 1208 RCFTSEHPKQWYKYLHLAELWYNSSFHSAIRMTPFEALYGRPPPRMTDYISGRSSLLSVD 1267
Query: 945 QISEADWAENYHLQLLGMDEKRLRAIHQTQVYQRRMARHFNKKVKDRKLEEGCLVLKEI- 1003
QI H Q + + K H + ++RMA NK D +EG LVL ++
Sbjct: 1268 QILT-------HRQAIITNLK-----HNLHISKQRMAFQANKHRIDCAFQEGDLVLLKLQ 1315
Query: 1004 --RQPIIDPR--GKFRPHWAGPYVLKKILSGGA 1032
RQ + R K + GP+ + + + A
Sbjct: 1316 PYRQTTVQHRVSQKLAKRFFGPFTVHRRIGSMA 1348
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 126/401 (31%), Positives = 196/401 (48%), Gaps = 25/401 (6%)
Query: 68 LENKFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAG 127
L + I+P P + ++++ V KK G R CVDYR LN KD FPLP ID L+D +
Sbjct: 2 LSSGLIQPSRGP-FSSHVLLVKKKVGSWRCCVDYRALNAI--KDRFPLPTIDELLDDLGK 58
Query: 128 HEMVSLTDLAVGYNQIMMHLPDKEKTVFIPEWGTYCYKVMPFGLKNAGATYQRMATTIFH 187
S DL G++QI M D KT F G Y KVMPFGL NA +T++ +F
Sbjct: 59 ASWFSKLDLQQGFHQIRMAPEDIPKTAFRTHHGHYECKVMPFGLCNAPSTFKSTMNNLFQ 118
Query: 188 DMIHKEVEVYVDDMVVKSKTAEEHTTALEKFFLRL*KYNLKLNPAKCLFGATSGVFLRHM 247
+ K A +H T L+ +L + L +KCLFG +L H+
Sbjct: 119 PFLRK--------------FAADHLTHLQLILTKLLEAQFFLKQSKCLFGQRQLEYLGHI 164
Query: 248 VSRKGIEIDPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGV 307
+S+KGI+ DPSK +A++E P P S +R FLG + +FI A P+ LL+K
Sbjct: 165 ISQKGIQADPSKLQAMVEWPQPTSTTLLRRFLGLTGFYRKFIKGYASIAAPLTNLLKKDS 224
Query: 308 AIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQAEDTRVEN 367
I W+ + + +F +K+ + P L P P L + +AMGA+L QQ +
Sbjct: 225 FI-WSPEAEHSFQTLKKAMTEAPTLAVPDFTLPFDLETDASAKAMGAVLMQQ------NH 277
Query: 368 VVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPVL 427
+ + SK++ L+ + + A+ A K + YL + + ++ LK L+ + +
Sbjct: 278 PIAFFSKQLCQRLLRSSTYVRELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQVIQ 337
Query: 428 DSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLAELPVEDQ 468
+ ++S L Y +K +Q K+ K +AD L+ + Q
Sbjct: 338 TPEQQVYLSKLLGYDVK-IQFKSGKTNVVADALSRIDTPSQ 377
>IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
44106402-44105385 H EGN_Mt090430 20090702
Length = 308
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 105/169 (62%)
Query: 3 REQIMECLKKFADCFMWKASDITGIDPAIAVHKIPVYPEAKPVKQKLRKLKT*WSLKIKE 62
R Q++ CLK+ D F W +D+ IDP++A H++ V P V Q+ RK S+ ++
Sbjct: 140 RAQLVACLKQNPDLFAWSRADMPVIDPSVACHQLTVDPGISVVAQRRRKQSPEKSVAAEK 199
Query: 63 EVAKQLENKFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHIDLLV 122
V LE KFI Y TWL+N+V V K +GK RM VDY DLN+ CPKD +PLP+ID LV
Sbjct: 200 TVKDFLEEKFILEAKYTTWLSNVVLVKKSNGKWRMSVDYTDLNRVCPKDAYPLPNIDKLV 259
Query: 123 DRMAGHEMVSLTDLAVGYNQIMMHLPDKEKTVFIPEWGTYCYKVMPFGL 171
D +G +++S D GYNQI M DK KT F+ E G Y Y VMPFGL
Sbjct: 260 DNSSGFKLLSFMDAYFGYNQIPMVEGDKMKTTFMTESGNYYYNVMPFGL 308
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 147 bits (372), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/180 (40%), Positives = 109/180 (60%)
Query: 97 MCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMHLPDKEKTVFI 156
M V+Y DL++ CPKD +PL +ID LVD +G+++ S D YNQI + D++KT F+
Sbjct: 1 MSVEYSDLSRVCPKDTYPLINIDKLVDNSSGYKLFSFMDFFSMYNQIPLDPKDEDKTTFM 60
Query: 157 PEWGTYCYKVMPFGLKNAGATYQRMATTIFHDMIHKEVEVYVDDMVVKSKTAEEHTTALE 216
E G + Y VM F LKN G TYQRM +F D I ++V +DDM+VK + +H + L
Sbjct: 61 VEAGNHFYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKVCMDDMIVKYREELDHMSHLN 120
Query: 217 KFFLRL*KYNLKLNPAKCLFGATSGVFLRHMVSRKGIEIDPSKAKAILEMPAPKSKKEVR 276
F+++ KYN+ N C FG + F+ ++ KGI+++P KA ++M P KK ++
Sbjct: 121 VVFIKVRKYNMHSNLENCTFGVKAAKFMGLYLTEKGIKVNPDNFKAEVDMELPMKKKGIQ 180
>IMGA|Medtr6g077300.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V3
15275252-15275869 F EGN_Mt090430 20090702
Length = 179
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 110/177 (62%), Gaps = 16/177 (9%)
Query: 416 NPLKFLMERPVLDSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLAELPVEDQMP-EVEF 474
+P+K++ E+ V+ K+A+W +L+ Y + F +KA+KG LAD LA P++D P E +F
Sbjct: 2 DPIKYIFEKAVVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDF 61
Query: 475 PDEDLLSLESE---------------VWEMYFDGASNYHGNGVGVVFKTPCGEYIPIAVK 519
PDE+++ L+S+ W + FDGA N +G G+G V +P G +IP +
Sbjct: 62 PDEEIMYLKSKDCDEPSINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTAR 121
Query: 520 LDFNCTNNEAEYEACIKGLEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPY 576
+ F CTNN AEYEACI G+E A++ IK L ++GDS L+++Q +W+ +L+PY
Sbjct: 122 ILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPY 178
>IMGA|Medtr5g105390.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 42329455-42328322 E
EGN_Mt090430 20090702
Length = 244
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 111/216 (51%), Gaps = 20/216 (9%)
Query: 727 MNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVNLNPIASPWRFATWGIDVIGKVHP 786
M GY+W TM D + C +CQ + PP L + SPW FA WGI
Sbjct: 1 MRAGYFWPTMLKDAQDYVNLCDKCQRHGDMHLAPPAELTSLISPWPFAWWGI-------- 52
Query: 787 KASNGHQFILVAVDYFTKWIEATSYSVLNAKKAAQFVRTNILCRYGTPFEIVTDNGSHFQ 846
VA+DY TKWIEA + + AK +F + NIL R+G P ++++NGS F
Sbjct: 53 ----------VAIDYSTKWIEAEPLAKITAKNVLRFFKRNILARFGVPALVISNNGSQFT 102
Query: 847 SE-FSDLLKQKKIQHHKSSPYRPQTNGAVEAANKAI-KVILQKMVQKHKAWHEQLPNALW 904
+ F D L+ I+ +S PQ +G EAAN+ I + I +++ E+L LW
Sbjct: 103 DQKFQDYLRNIDIKQSFTSVEHPQAHGLAEAANRVILRGIRRRLDATKTKRAEELHTVLW 162
Query: 905 GYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSVRI 940
YRT+ + T +P+ L YG +AV+PIEL + RI
Sbjct: 163 SYRTTPHSTTSESPFRLTYGTKAVIPIELTELTWRI 198
>IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13291757-13291422 H EGN_Mt090430 20090702
Length = 111
Score = 138 bits (348), Expect = 1e-32, Method: Composition-based stats.
Identities = 61/109 (55%), Positives = 77/109 (70%)
Query: 97 MCVDYRDLNKACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMHLPDKEKTVFI 156
MC DY +LNK CPKD +PLP ID LV + ++++S D GYN+I MHL D+EKT F+
Sbjct: 1 MCTDYTNLNKVCPKDAYPLPSIDQLVHNTSRYDLLSFMDAYSGYNKIRMHLEDEEKTAFM 60
Query: 157 PEWGTYCYKVMPFGLKNAGATYQRMATTIFHDMIHKEVEVYVDDMVVKS 205
+ YCYK MPFGL+N GAT+QR+ +F I K +EVYVDDMVVKS
Sbjct: 61 TDKANYCYKGMPFGLRNTGATFQRLVDKVFKSEIGKTIEVYVDDMVVKS 109
>IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61
17375-18058 H EGN_Mt090430 20090702
Length = 227
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 16/230 (6%)
Query: 282 LQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPL 341
L Y+SRFI + P KLLRK + W + C+ A +K+ L +PP+L P G+ L
Sbjct: 2 LTYLSRFIVKSTQHALPFLKLLRKEIKFDWIDKCENALKHLKEILSAPPVLSRPEQGEVL 61
Query: 342 LLYLSVTEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQ 401
LYLS++ A+ A+L ++ + + VY+ SK++L E + KIEK+ LAL+ A +L+
Sbjct: 62 YLYLSISSTAVSAVLIRETAEG--QKSVYFTSKKLLGPETRNQKIEKVALALLTASQRLR 119
Query: 402 HYLSSYTTYVISESNPLKFLMERPVLDSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLA 461
Y ++T ++ P++ ++ RP + +M KW L+ + + + RKA+K AD L
Sbjct: 120 QYFFAHTV-IVKIDQPIRQILGRPNVAGRMMKWSLELSEFDIHYESRKALKAQVFADFLT 178
Query: 462 ELPVEDQMPEVEFPDEDLLSLESEVWEMYFDGASNYHGNGVGVVFKTPCG 511
E+ FP E +E W ++ DG+SN G+G G++ + G
Sbjct: 179 EMT---------FPTE----YNTEEWTVFVDGSSNSKGSGAGIIVEDNKG 215
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold AC229695.5 96798-94993 H
EGN_Mt090430 20090702
Length = 555
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 16/309 (5%)
Query: 196 VYVDDMVVKSKTAEEHTTALEKFFLRL*KYNLKLNPAKCLFGATSGVFLRHMVSRKGIEI 255
V+ DD++V SK E H L L ++ L N KC FG +L H++S +G+
Sbjct: 15 VFFDDILVYSKDVEHHKHHLGAVLALLKEHQLVANYKKCTFGQHQLEYLGHIISAQGVAA 74
Query: 256 DPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDC 315
D K +L P PK K +RGFLG Y RF+ P+ LL+K + WNE+
Sbjct: 75 DQKKVDVMLTWPRPKDLKSLRGFLGLTGYYRRFVRNYGSIAKPLTHLLKKDNFL-WNEEA 133
Query: 316 QKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQAEDTRVENVVYYLSKR 375
Q +FD +K+ + PIL P P ++ + +GA+L QQ V +LS+
Sbjct: 134 QLSFDTLKKAMAELPILSVPNFSIPFVIETDASNTGLGAILMQQGRP------VAFLSQP 187
Query: 376 MLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPVLDSKMAKWV 435
+ + + + E+ +A+V+A K +HYL + ++ LKFL ++ VL + KW
Sbjct: 188 LSERAQRKSIYERELMAIVFAVQKWRHYLMGNHFIIHTDQKSLKFLQDQRVLGADQFKWT 247
Query: 436 SVLAAYGLKFVQRKAVKGGALADQLAELPVEDQMPEVEFPDEDLLS--------LESEVW 487
S L + + + + A AD L+ + + F D + L++ +
Sbjct: 248 SKLMGFDFEIIYKPGSDNRA-ADALSRRMTYAAISMIHFADYEEWEAEVMHDNKLQTIIH 306
Query: 488 EMYFDGASN 496
++ DGAS+
Sbjct: 307 DLIADGASH 315
>IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
44103723-44102826 H EGN_Mt090430 20090702
Length = 258
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 146/328 (44%), Gaps = 77/328 (23%)
Query: 474 FPDEDLLSLESEVWEMYFDGASNYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEA 533
FP +D E W ++ +SN G+G G++ + + +A
Sbjct: 3 FPTDD----NKEEWTVFVYESSNSKGSGAGIIVE----------------------DNKA 36
Query: 534 CIKGLEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFH 593
+ GL A + G K +K+F DS L+ SQ ++ +KEE L Y++ + E ++ E +
Sbjct: 37 FLAGLRTAQDMGEKKVKIFTDSQLVASQVTGEFHVKEEHLQKYVQFVLEKMKEIEAVEVT 96
Query: 594 YLPRAKNQFADALATLASMVNVGGDQVIRPLTVRLQKQSAYVMNLVDDKPWFWDIQNYLQ 653
++PR +N AD L+ LAS G++ + IQ L
Sbjct: 97 HVPREQNTRADILSKLASTRTANGNKTM--------------------------IQEVLN 130
Query: 654 YEAYPEGSSKTDQRTLRQLASGYFITRGVLYKRSWNGLHLRCVEEGEAQAIMDSLHNGES 713
+ E +K + ++L +H R E Q ++ +H+G
Sbjct: 131 ETSIQE-KAKDEMKSLL--------------------VHFRL---NETQEVLADVHDGIC 166
Query: 714 GPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVNLNPIASPWRF 773
G H+ ALA++I+ GYYW TM D + C +CQ + PP +L + SPW F
Sbjct: 167 GQHLGAKALAKQILRAGYYWPTMLKDTQDYMNLCDKCQRHGDMHLAPPADLTLVVSPWPF 226
Query: 774 ATWGIDVIGKVHPKASNGHQFILVAVDY 801
A WGID++G PKA+ ++++VA+DY
Sbjct: 227 AWWGIDILGPF-PKAAGELKYLIVAIDY 253
>IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein,
chr03_pseudomolecule_IMGAG_V3 44105220-44104602 H
EGN_Mt090430 20090702
Length = 181
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 26/207 (12%)
Query: 227 LKLNPAKCLFGATSGVFLRHMVSRKGIEIDPSKAKAILEMPAPKSKKEVRGFLGRLQYIS 286
++LN KC FG +G FL ++ +GIE + K AI E+P P SKK ++ G L +S
Sbjct: 1 MRLNLEKCTFGVQAGKFLGFYLTERGIEANRDKCHAITELPTPHSKKCIQILNGMLIALS 60
Query: 287 RFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLS 346
RF+ + A+ P FKLLRK W ++C+ A + +K+ L +PP+L P G+ L YLS
Sbjct: 61 RFVAKSAEHALPFFKLLRKETKFGWTDECENALNHLKETLSAPPVLSRPYEGEVLYQYLS 120
Query: 347 VTEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSS 406
V+ A+G E +Y +I+K+ LAL+ A +L+ Y +
Sbjct: 121 VSSNALGP-------------------------ETRYQRIDKVALALLIAARRLRQYFLA 155
Query: 407 YTTYVISESNPLKFLMERPVLDSKMAK 433
+T V ++ P++ ++ RP + +M K
Sbjct: 156 HTVEVRTD-QPIRQILGRPDVAGRMMK 181
>IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 14035625-14034550 H
EGN_Mt090430 20090702
Length = 270
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 5/193 (2%)
Query: 636 MNLVDDK--PWFWDIQNYLQYEAYPEGSSKTDQRTLRQLASGYFITRGVLYKRSWNGLHL 693
+NL+ ++ W + YL P S +++ +R+ AS + LYKR L
Sbjct: 10 VNLIIEREESWMATLLKYLTGSFTP--VSAEEEQVVRKRASKFVNVSRKLYKRGRTNPLL 67
Query: 694 RCVEEGEAQAIMDSLHNGESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIF 753
RC+ E E ++ +H G G H+ G ALA K++ GYYW TM D KC +CQ F
Sbjct: 68 RCLGEDETHLVLLEVHEGVCGSHIRGRALAAKLLRSGYYWPTMLHDSSDFVRKCDKCQKF 127
Query: 754 AKLQRRPPVNLNPIASPWRFATWGIDVIGKVHPKASNGHQFILVAVDYFTKWIEATSYSV 813
+ + L + SPW F W +D++G P A +F++V VDYFTKWIEA + +
Sbjct: 128 SYKKHALAQKLTSVYSPWPFHIWAVDIVGPF-PLAPGQLEFLIVGVDYFTKWIEAEAVAK 186
Query: 814 LNAKKAAQFVRTN 826
+ A+++A V N
Sbjct: 187 ITAERSANKVILN 199
>IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87913
H EGN_Mt090430 20090702
Length = 142
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 680 RGVLYKRSWNGLHLRCVEEGEAQAIMDSLHNGESGPHMHGIALARKIMNMGYYWSTMNAD 739
G LYKR + ++C+ E Q ++ +H+G G H+ +LARK++ GYYW TM D
Sbjct: 2 EGTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKD 61
Query: 740 CMRHA*KCHECQIFAKLQRRPPVNLNPIASPWRFATWGIDVIGKVHPKASNGHQFILVAV 799
+ C +CQ + PPV L + SPW FA WGID++G PKA+ ++++VA+
Sbjct: 62 AEDYVNLCDKCQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPF-PKATGQLKYLVVAI 120
Query: 800 DYFTKWIEATSYSVLNAK 817
+Y TKWIE + + AK
Sbjct: 121 NYSTKWIEVEPLAKIKAK 138
>IMGA|Medtr6g077290.1 Ribonuclease H, putative
chr06_pseudomolecule_IMGAG_V3 15274861-15275193 H
EGN_Mt090430 20090702
Length = 110
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 64/91 (70%)
Query: 303 LRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQAED 362
L K I WN++CQ+AFD +K YLL PPIL PP G+PL+LYLSV +E++G +L Q+ E
Sbjct: 19 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 78
Query: 363 TRVENVVYYLSKRMLDYELKYNKIEKLCLAL 393
+ E+ +YYLSK+ D E +Y +EK C AL
Sbjct: 79 GKKEHAIYYLSKKFTDCETRYTMLEKTCCAL 109
>IMGA|Medtr4g047400.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
11037309-11036614 H EGN_Mt090430 20090702
Length = 231
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 17/212 (8%)
Query: 433 KWVSVLAAYGLKFVQRKAVKGGALADQLAELPVEDQMPEVEFPDEDLLSLESEVWEMYFD 492
KW + + + RKA+K AD AE+ FPD+ + E +W +Y D
Sbjct: 2 KWSLEFLEFDIHYESRKALKAHMFADFKAEMT---------FPDD---ANEEGIWIIYVD 49
Query: 493 GASNYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKGLEAALEKGIKILKVF 552
G+SN G+G GV+ I +++ L F TNN AEYEA + GL A + K +K+
Sbjct: 50 GSSNSKGSGAGVIVDNSNKIVIELSLGLSFTMTNNTAEYEAYLVGLRVAKDMEAKRVKIC 109
Query: 553 GDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPRAKNQFADALATLASM 612
DS L SQ +++++EE Y+ + ++F+ + ++ R N + L+ LAS
Sbjct: 110 TDSQLAASQVSGEFQVQEEHRQEYVLVVQAKIKEFDSVEVEHVLREINTRENILSKLAST 169
Query: 613 VNVGGD-----QVIRPLTVRLQKQSAYVMNLV 639
G+ +V+ +V+ QK + +N++
Sbjct: 170 RTTNGNITVIQEVLTEPSVQRQKALLHEINVI 201
>IMGA|Medtr4g047190.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
10902288-10901593 H EGN_Mt090430 20090702
Length = 231
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 17/212 (8%)
Query: 433 KWVSVLAAYGLKFVQRKAVKGGALADQLAELPVEDQMPEVEFPDEDLLSLESEVWEMYFD 492
KW + + + RKA+K AD AE+ FPD+ + E +W +Y D
Sbjct: 2 KWSLEFLEFDIHYESRKALKAHMFADFKAEMT---------FPDD---ANEEGIWIIYVD 49
Query: 493 GASNYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKGLEAALEKGIKILKVF 552
G+SN G+G GV+ I +++ L F TNN AEYEA + GL A + K +K+
Sbjct: 50 GSSNSKGSGAGVIVDNSNKIVIELSLGLSFTMTNNTAEYEAYLVGLRVAKDMEAKRVKIC 109
Query: 553 GDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPRAKNQFADALATLASM 612
DS L SQ +++++EE Y+ + ++F+ + ++ R N + L+ LAS
Sbjct: 110 TDSQLAASQVSGEFQVQEEHRQEYVLVVQAKIKEFDSVEVEHVLREINTRENILSKLAST 169
Query: 613 VNVGGD-----QVIRPLTVRLQKQSAYVMNLV 639
G+ +V+ +V+ QK + +N++
Sbjct: 170 RTTNGNITVIQEVLTEPSVQRQKALLHEINVI 201
>IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 H
EGN_Mt090430 20090702
Length = 72
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 49/71 (69%)
Query: 107 ACPKDDFPLPHIDLLVDRMAGHEMVSLTDLAVGYNQIMMHLPDKEKTVFIPEWGTYCYKV 166
AC KD +PLP+ID LVD +G+++ S D YNQI+M DK+KT F+ E G Y Y V
Sbjct: 2 ACRKDAYPLPNIDKLVDNSSGYKLFSFMDTYSRYNQILMAEGDKKKTAFMTESGNYYYNV 61
Query: 167 MPFGLKNAGAT 177
MPFGL+N GAT
Sbjct: 62 MPFGLRNMGAT 72
>IMGA|Medtr4g047410.1 gag-pol polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 11043520-11043164 H
EGN_Mt090430 20090702
Length = 118
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 282 LQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPL 341
L + RF+ + A P F LL+K +W +C+KA +K L +PP+L P G+ L
Sbjct: 2 LTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETL 61
Query: 342 LLYLSVTEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWAC 397
LYLSV+ EA+ L E + Y+ SK +L E +Y KIEK+ LALV A
Sbjct: 62 YLYLSVSSEAVSGTL--NIETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTAA 115
>IMGA|Medtr4g047200.1 gag-pol polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 10908500-10908144 H
EGN_Mt090430 20090702
Length = 118
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 282 LQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPL 341
L + RF+ + A P F LL+K +W +C+KA +K L +PP+L P G+ L
Sbjct: 2 LTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETL 61
Query: 342 LLYLSVTEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWAC 397
LYLSV+ EA+ L E + Y+ SK +L E +Y KIEK+ LALV A
Sbjct: 62 YLYLSVSSEAVSGTL--NIETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTAA 115
>IMGA|Medtr3g068370.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 15932594-15933743 H
EGN_Mt090430 20090702
Length = 165
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 797 VAVDYFTKWIEATSYSVLNAKKAAQFVRTNILCRYGTPFEIVTDNGSHFQS-EFSDLLKQ 855
+AV+Y +KW EAT+ + + A + + I R+G P +++D GSHF S +F ++LK+
Sbjct: 77 IAVNYVSKWNEATASPTNDTRVAIKIFKQKIFPRFGVPRLVISDGGSHFISRQFENILKK 136
Query: 856 KKIQHHKSSPYRPQTNGAVEAANK 879
+ ++H ++PY PQT+G VE +N+
Sbjct: 137 RGVKHIVATPYHPQTSGQVEVSNR 160
>IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233082.3 16661-16311 H EGN_Mt090430
20090702
Length = 116
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 167 MPFGLKNAGATYQRMATTIFHDMIHKEVEVYVDDMVVKSKTAEEHTTALEKFFLRL*KYN 226
MPFGL NA +++Q + + + V V+ DD+++ S +H L L
Sbjct: 1 MPFGLSNAPSSFQSAMNDMLRPYLRRFVLVFFDDILIYSTNMADHLIHLRLILDLLVTNQ 60
Query: 227 LKLNPAKCLFGATSGVFLRHMVSRKGIEIDPSKAKAILEMPAPKSKKEVRGFLG 280
+KC+F + +L H++S +G++ DP K AI + P P S +RGFLG
Sbjct: 61 FVAKLSKCVFAVETVHYLGHVISAQGVKADPEKVTAITDWPKPHSLTALRGFLG 114
>IMGA|Medtr6g028320.1 Polynucleotidyl transferase, Ribonuclease H fold
chr06_pseudomolecule_IMGAG_V3 6407540-6406225 E
EGN_Mt090430 20090702
Length = 379
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 40/353 (11%)
Query: 703 AIMDSLHNGESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPV 762
IM H+ + H G+ ++ + W D + CH CQ + +
Sbjct: 29 TIMTEFHSTPTAGHS-GLKPTLSRLSASFLWPGTYTDVKQFIRNCHTCQQNKYMLTKKQG 87
Query: 763 NLNPIASP---WRFATWGIDVIGKVHPKASNGHQFILVAVDYFTKWIEATSYSVLNAKKA 819
L P+ P W T +D I H AS H + V D +K++ + L K A
Sbjct: 88 LLQPLPIPDKVWDELT--MDFI--THLPASFRHTVVWVICDRLSKYVH---FIALPTKFA 140
Query: 820 AQFVRTNI---LCR-YGTPFEIVTDNGSHFQSEF-SDLLKQKKIQHHKSSPYRPQTNGAV 874
AQ + +CR +G P I +D F S+F +L + + S+ Y P+T+G
Sbjct: 141 AQDLANRFSTEICRLHGIPKTITSDRDPLFLSQFWKELFRTQGTIMQYSTTYHPETDGQT 200
Query: 875 EAANKAIKVILQKMVQKH-KAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIEL 933
E N++++ L+ H K W + L A + Y +S T +P+ +YG P L
Sbjct: 201 EVVNRSLETYLRCFASDHPKHWFKFLHLAEFWYNSSFHTAIQMSPFEALYGRTP--PTIL 258
Query: 934 EVQSVRIIRESQISEADWAENYHLQLLGMDEKRLRAIHQTQVYQRRMARHFNKKVKDRKL 993
+ + ++QI + + +L ++ LR Q M NKK +D
Sbjct: 259 DY----VANQTQIPQLNANLQNRQTILTTLKQNLRRTRQL------MEVQANKKRRDCVF 308
Query: 994 EEGCLVLKEI---RQPIIDPRGKFRPHWAGPYVLKKILSGGAVILTDLGGLEF 1043
G LVL + RQ + R GP + K+ G +++ +G + +
Sbjct: 309 YPGDLVLLRLQPYRQQTVQRR-------VGPKLSKRFF-GPFIVIRRIGSVAY 353
>IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 7063133-7061964 H
EGN_Mt090430 20090702
Length = 356
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 115/302 (38%), Gaps = 58/302 (19%)
Query: 731 YYWSTMNADCMRHA*KCHECQIFAKLQRRPPVNLNPIASPWRFATW---GIDVIGKVHPK 787
++W M D + +C CQ ++P L P+ P A W +D I + P
Sbjct: 14 FFWQGMRTDVQKFVSECSICQTTKYETKKPTGLLQPLPLP--SAIWEDLSLDFITGLPP- 70
Query: 788 ASNGHQFILVAVDYFTKWIEATSYSVLNAKKAAQFVRTNILCRYGTPFEIVTDNGSHFQS 847
S+G ILV F+K G F + N S
Sbjct: 71 -SHGFSVILVVAGRFSK---------------------------GAHFGALPTN----YS 98
Query: 848 EFSDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKMVQ-KHKAWHEQLPNALWGY 906
F +L K + S+ Y PQT+G E N+ ++ ++ V K W+ LP A W Y
Sbjct: 99 AFKELFKLCGTKLRMSTAYHPQTDGQTEVLNRVLEQYIRSFVHNKPNQWYSFLPLAEWSY 158
Query: 907 RTSIRTPTGATPYSLVYGME-AVLPIELEVQSVRIIRESQISEADWAENYHLQLLGMDEK 965
TSI + TG +P+ + Y E +P L I S+I D + +L + K
Sbjct: 159 NTSIHSATGFSPFYVTYDKEPPSIPNYL-------IGSSRIEAVDTLLSSRQDILTILTK 211
Query: 966 RLRAIHQTQVYQRRMARHFNKKVKDRKLEEGCLV---LKEIRQPII--DPRGKFRPHWAG 1020
+L Q RM + +KK +D G V L+ RQ I K + G
Sbjct: 212 KLLKA------QERMKHYADKKRRDITFNIGDFVYVKLRPYRQQSITGTTYSKLSKRYYG 265
Query: 1021 PY 1022
PY
Sbjct: 266 PY 267
>IMGA|Medtr2g120570.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
28388705-28395880 E EGN_Mt090430 20090702
Length = 412
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 442 GLKFVQRKAVKGGALADQLAELPVEDQM------PEVEFPDEDLLSLESEVWEMYFDGAS 495
L+ +++ VK L ++E P+ Q+ P V + L + + FDGAS
Sbjct: 191 ALEVLEQNNVKATGLT-SISEDPLRKQVKLDRAAPGVASSLANSYILVQKTCIVEFDGAS 249
Query: 496 NYHGN----GVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKGLEAALEKGIKILKV 551
GN G G + ++ G I + TNN AEY A I G+ AL+KG + +
Sbjct: 250 K--GNPGKAGAGAILRSKDGNLIYRVREGVGIATNNVAEYRAMILGMRHALKKGFTSICI 307
Query: 552 FGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPRAKNQFADALATLAS 611
GDS L+ Q WK+K E L + EL +F ++ R N ADA A LA
Sbjct: 308 QGDSKLVCMQIDGLWKVKNENLSTLYKVAKELKDKFVSFKISHVLRDLNSEADAQANLA- 366
Query: 612 MVNVGGDQV 620
VN+ QV
Sbjct: 367 -VNLADGQV 374
>IMGA|Medtr6g008710.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V3
1223230-1226786 H EGN_Mt090430 20090702
Length = 210
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 47/94 (50%)
Query: 523 NCTNNEAEYEACIKGLEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDE 582
N T EAEY A I GL+ A+ KG K + V G+S + +Q W+ + L +
Sbjct: 108 NLTQKEAEYRALILGLKQAIMKGFKNITVKGESKFVTNQFGEPWQTADGNLRKLCLEAMK 167
Query: 583 LAQQFEDLSFHYLPRAKNQFADALATLASMVNVG 616
L F+ S HY+P N+ A +A A +NVG
Sbjct: 168 LRNNFDSFSIHYIPSEHNKGASDIANYAIHLNVG 201
>IMGA|Medtr4g073750.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 14702670-14703735 H
EGN_Mt090430 20090702
Length = 331
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 35/286 (12%)
Query: 704 IMDSLHNGESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVN 763
++ H+ G H ++I + YW M D + C CQ+ P
Sbjct: 35 LLKDYHSSAVGGHSRFFRTYKRIYAI-IYWEGMRKDIQQIVATCETCQLNKYQTLSPTGL 93
Query: 764 LNPIASPWRFAT-WGIDVIGKVHPKASNGHQFILVAVDYFTKWIEATSYSVLNAKKAAQF 822
L P+ P + T +D I + PKA +K A+
Sbjct: 94 LQPLPIPTQVWTDISMDFIEGL-PKAHGK-----------------------KSKDVAES 129
Query: 823 VRTNILCRYGTPFEIVTDNGSHFQSEF-SDLLKQKKIQHHKSSPYRPQTNGAVEAANKAI 881
++ +G P IV+D F S F S+L + + SS Y PQT+G E AN+ +
Sbjct: 130 FIKEVIKLHGFPSTIVSDRDKIFLSHFWSELFRTAGTKLKFSSAYHPQTDGQTEVANRCL 189
Query: 882 KVILQKMV-QKHKAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSVRI 940
+ L+ + K K W + L A + + T+ + TP+ +YG + P+ L+ ++
Sbjct: 190 ETYLRCLTGTKPKQWRKWLGWADFWFNTNYNSSLKQTPFKTLYGRDP--PLLLKGTTI-- 245
Query: 941 IRESQISEADWAENYHLQLL-GMDEKRLRAIHQTQVYQRRMARHFN 985
S + E + + Q+L + + ++A+ Q + Y + R N
Sbjct: 246 --PSLVEEVNVLTDERDQILHDLKQNLVKALEQMKAYADKSRRSVN 289
>IMGA|AC233082_3.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein AC233082.3 19216-16757 H
EGN_Mt090430 20090702
Length = 819
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 34 HKIPVYPEAKPVKQKLRKLKT*WSLKIKEEVAKQLENKFIEPIAYPTWLANIVPVPKKDG 93
H IP+ P P+ K + + + L+N I P P + + ++ V KKDG
Sbjct: 721 HHIPLLPNTPPINVKPYRYPHSQKDAMTTLIRDMLQNGTIMPSTSP-FSSPVLLVRKKDG 779
Query: 94 KVRMCVDYRDLNKACPKDDFPLPHIDLLVDRMAG 127
R CVDYR LN KD FP+P ID L+D +
Sbjct: 780 TWRFCVDYRALNAVTVKDRFPIPTIDELLDELGA 813
>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
EGN_Mt090430 20090702
Length = 460
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 254 EIDPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNE 313
++D K +AI + PAP S E R F G + RFI + PI K L KG +KW
Sbjct: 168 QVDEEKVRAIRDWPAPTSVTEKRSFHGLATFYRRFIRYFSIITAPITKCLEKG-KLKWGS 226
Query: 314 DCQKAFDRVKQYLLSPPILQPPRLGK 339
+ +++F +K+ L + P+L P K
Sbjct: 227 EQEQSFALIKKKLCAAPVLPLPNFEK 252
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 60 IKEEVAKQLENKFIEPIAYPTWLANIVPVPKKDGKVRMCVDYRDLNKACPKDDFPLPHID 119
++E++ L FI + + ++ VPKK + R CV+ R +NK K FP+P ++
Sbjct: 60 VREQIEDLLRKGFIRE-SMSSCDVPVLLVPKKGNQWRKCVESRVINKITIKYQFPIPRLE 118
Query: 120 LLVDRMAGHEMVSLTDLAVGYNQIMMHLPDKEKTVFIPEWGTYCYKVMPFGLKNAGATYQ 179
++D + + + D+ +T F + G Y VMPF L NA +T+
Sbjct: 119 DMLDE---------------FQNLRIRPGDERQTYFKSKDGLYESLVMPFRLSNAPSTFM 163
Query: 180 RMATTI 185
R+ +
Sbjct: 164 RLMNQV 169
>IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
21895306-21893422 E EGN_Mt090430 20090702
Length = 306
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 127/306 (41%), Gaps = 24/306 (7%)
Query: 171 LKNAGATYQRMATTIFHDMIHKEVEVYVDDMVVKS-KTAEEHTTALEKFFLRL*KYNLKL 229
+K + +QR TI + +Y+DD++V S K ++H +E + ++ + L
Sbjct: 1 MKQSPGIFQRRMDTILKEF-KDFCLIYIDDILVFSNKDLDDHFKKVELVLNKCFEHGVVL 59
Query: 230 NPAKCLFGATSGVFLRHMVSRKGIEIDPSK---AKAILE----MPAP-KSKKEVRGFLGR 281
+ K + +L G+EI+ K K +LE P K KKE++ FLG
Sbjct: 60 SKKKAVVAQNKINYL-------GLEIEKGKFLMQKHVLEKLQKFPTKLKDKKELQRFLGL 112
Query: 282 LQYISR--FINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGK 339
L YIS FI LA + + L+K W ED + ++K P L P
Sbjct: 113 LTYISYEGFIKNLAAESKLLQQKLKKDSIWSWTEDDEVLITKLKNLCQDLPELYHPSDDD 172
Query: 340 PLLLYLSVTEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACTK 399
+++ + + G ++ + + E + Y+S D E+ Y EK LA++ K
Sbjct: 173 LIIIETDASNKYWGGVMKAKPPGQKKELLCRYMSGTFSDSEINYPTHEKETLAVIRMLEK 232
Query: 400 LQHYLSSYTTYVISESN---PLKFLMERPVL-DSKMAKWVSVLAAYGLKFVQRKAVKGGA 455
+ Y+ V ++S K + + ++ +W LA Y K K
Sbjct: 233 HRIYVLDKEFIVRTDSTYVAGFKNINHKGTYKQGRLIRWQMKLAEYNYSISHIKGEK-NV 291
Query: 456 LADQLA 461
LAD L+
Sbjct: 292 LADILS 297
>IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fold
AC233082.3 16225-8671 H EGN_Mt090430 20090702
Length = 695
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 130/323 (40%), Gaps = 48/323 (14%)
Query: 719 GIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVNLN---PIASP-WRFA 774
G +AR + +YW + C CQ +K Q + + L PI S W
Sbjct: 198 GPTVAR--LAASFYWPGLYTAVKEFVKNCATCQQ-SKNQTQKKLGLLQALPIPSQVWEEL 254
Query: 775 TWGIDVIGKVHPKASNGHQFILVAVDYFTKWIEATSY-SVLNAKKAAQFVRTNILCRYGT 833
T +D I H S GH I V D TK++ + S A+ A I +G
Sbjct: 255 T--MDFI--THLPNSFGHTVIWVICDRLTKYVHFIALPSKFTAEDLANRFSVEICRLHGI 310
Query: 834 PFEIVTDNGSHFQSEF-SDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKMVQKH 892
P I++D F S+F +L K + Q S+ Y P+T+G E N+ ++ L
Sbjct: 311 PKTIISDRDPLFLSKFWKELFKTQGTQLRFSTAYHPETDGQTEVVNRTLESYL------- 363
Query: 893 KAWHEQLPNALWGYRTSIRTPTGATPYSLVYGMEAVLPIELEVQSVRIIRESQISEADWA 952
+ +H +++ + T TP+ +YG + S I + + E+ A
Sbjct: 364 RCFHN----------STVHSATQLTPFQALYGRPPPKIPDYVTGSSSI---TSLEESLQA 410
Query: 953 ENYHLQLLGMDEKRLRAIHQTQVYQRRMARHFNKKVKDRKLEEGCLVLKEI---RQPIID 1009
+ LQ L + + R ++M NKK +D G LVL + RQ +
Sbjct: 411 RHLVLQQLKKNLTKSR---------KQMEVQANKKRRDHTFNVGDLVLLRLQPYRQSTVQ 461
Query: 1010 PRG--KFRPHWAGPY-VLKKILS 1029
R K + GP+ VL++I S
Sbjct: 462 RRSSQKLAKRFFGPFHVLERIGS 484
>IMGA|Medtr1g107950.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 22894019-22894917 H
EGN_Mt090430 20090702
Length = 160
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 49/199 (24%)
Query: 307 VAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQAEDTRVE 366
V ++W ++C+ A +K+ L PP P G+ LYLSV E + L ++ ++ + +
Sbjct: 7 VKLEWKDECEVALTHLKKALFQPPTFSQPEEGEISYLYLSVAFEFVSVALIRETKEDK-K 65
Query: 367 NVVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPV 426
VY++ K + E+ Y IEK +A W + +L + Y+
Sbjct: 66 TSVYFMRKALQKLEIHYQIIEK--VASYWRLGDFE-FLKLFELYI--------------- 107
Query: 427 LDSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLAELPVEDQMPEVEFPDEDLLSLESEV 486
KF +KA+ L D +A++ P+E L
Sbjct: 108 -----------------KFEAKKALTMHMLIDFVAQMNTS--------PEEKTYKL---- 138
Query: 487 WEMYFDGASNYHGNGVGVV 505
+ DG+ N GNGVG++
Sbjct: 139 -IILIDGSYNSKGNGVGII 156
>IMGA|Medtr1g107770.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 22825433-22826331 H
EGN_Mt090430 20090702
Length = 160
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 49/199 (24%)
Query: 307 VAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAMGAMLAQQAEDTRVE 366
V ++W ++C+ A +K+ L PP P G+ LYLSV E + L ++ ++ + +
Sbjct: 7 VKLEWKDECEVALTHLKKALFQPPTFSQPEEGEISYLYLSVAFEFVSVALIRETKEDK-K 65
Query: 367 NVVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVISESNPLKFLMERPV 426
VY++ K + E+ Y IEK +A W + +L + Y+
Sbjct: 66 TSVYFMRKALQKLEIHYQIIEK--VASYWRLGDFE-FLKLFELYI--------------- 107
Query: 427 LDSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLAELPVEDQMPEVEFPDEDLLSLESEV 486
KF +KA+ L D +A++ P+E L
Sbjct: 108 -----------------KFEAKKALTMHMLIDFVAQMNTS--------PEEKTYKL---- 138
Query: 487 WEMYFDGASNYHGNGVGVV 505
+ DG+ N GNGVG++
Sbjct: 139 -IILIDGSYNSKGNGVGII 156
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 30/229 (13%)
Query: 711 GESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVNLNPIASP 770
GE + G +++ +M + + T+ D HA C CQ + + P +++ +S
Sbjct: 481 GEQVRGLLGHVSNKRLNHMSHLYPTLTVD--NHA-TCDICQFAKQKKLSFPTSVSVASSK 537
Query: 771 W---RFATWGIDVIGKVHPKASNGHQFILVAVDYFTK--WIEATSYSVLNAKKAAQFVRT 825
+ F WG + +H H++ L +D ++ WI ++ F+
Sbjct: 538 FELLHFDIWGPLAVTSIH-----NHRYFLTILDDYSIFFWIVLLKSKYEVSQHVKNFINL 592
Query: 826 NILCRYGTPFEIVTDNGSHFQSEFSDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVIL 885
+ TP + +DNG F + K I HHKS PQ NG VE ++ I +
Sbjct: 593 IHTQYHITPKVVRSDNGPEFL--LNSFYASKGIVHHKSCVETPQQNGRVERKHQHILNVG 650
Query: 886 QKMVQKHKAWHEQLPNALWGY----------RTSIRTPTGATPYSLVYG 924
+ ++ + +LP++ W Y R + T +PY L++G
Sbjct: 651 RALL-----FQSKLPSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHG 694
>IMGA|Medtr6g077110.1 hypothetical protein
chr06_pseudomolecule_IMGAG_V3 15154461-15153942 H
EGN_Mt090430 20090702
Length = 152
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 41/149 (27%)
Query: 873 AVEAANKAIKVILQKMVQKHKAWHEQLPNALWGYRTSIRTPTGATP-YSLVYGMEAVLPI 931
AV+AANK K I+QK +K WHE LP AL Y + T TGATP + VY M+ VLP+
Sbjct: 33 AVKAANKISKKIVQKFAFIYKDWHEMLPLALHEYCPVVHTSTGATPSFPQVYNMKVVLPV 92
Query: 932 ELEVQSVRIIRESQISEADWAENYHLQLLGMDEKRLRAIHQTQVYQRRMARHFNKKVKDR 991
E+EV ++ ++ +S++ KV+ R
Sbjct: 93 EVEVLTIGVLPKSKL----------------------------------------KVRPR 112
Query: 992 KLEEGCLVLKEIRQPIIDPRGKFRPHWAG 1020
+ +EG V K++ D RGK+ P++ G
Sbjct: 113 EFQEGDSVPKKVLSFQSDSRGKWTPNYEG 141
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 26/218 (11%)
Query: 719 GIALARKIMNMGYYWSTMNADCMRHA*KCHECQIFAKLQRRPPVNLNPIASPWRFATWGI 778
G +++++M + T+ D CH FAK ++ P N +AS +F
Sbjct: 497 GHVSPKRLIHMSQLYPTLTVDVHATCDICH----FAKQKKLPFSNSISVAS-IKFELLHF 551
Query: 779 DVIGKVHPKASNGHQFILVAVDYFTK--WIEATSYSVLNAKKAAQFVRTNILCRYG-TPF 835
D+ G + + + H++ L +D +++ WI ++ F+ I +Y TP
Sbjct: 552 DIWGPLSITSIHNHRYFLTILDDYSRYVWIVLLKSKSEVSQHVKNFINL-IQTQYNITPK 610
Query: 836 EIVTDNGSHFQSEFSDLLKQKKIQHHKSSPYRPQTNGAVEAANKAIKVILQKMVQKHKAW 895
+ +DNG F K I HH+S PQ NG VE ++ I + + ++ +
Sbjct: 611 TVRSDNGPEFL--LHSFYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALL-----Y 663
Query: 896 HEQLPNALWGY----------RTSIRTPTGATPYSLVY 923
+LP + W Y R + T +PY L++
Sbjct: 664 QSKLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLLH 701
>IMGA|Medtr6g059710.1 GAG-POL precursor, putative
chr06_pseudomolecule_IMGAG_V3 10920548-10921569 E
EGN_Mt090430 20090702
Length = 99
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 693 LRCVEEGEAQAIMDSLHNGESGPHMHGIALARKIMNMGYYWSTMNADCMRHA*KCHECQ 751
L+C+ E + +H G +G H+ G +LARK GY+W TM D M + KC +CQ
Sbjct: 30 LKCLVPSEVGYALADVHEGIAGQHLRGHSLARKEHRAGYFWLTMKYDAMEYVIKCDKCQ 88
>IMGA|Medtr3g059230.1 gag-pol polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 13292042-13291812 H
EGN_Mt090430 20090702
Length = 76
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 4 EQIMEC-LKKFADCFMWKASDITGIDPAIAVHKIPVYPEAKPVKQKLRKLKT*WSLKIKE 62
E+ M+C L+K D F W D+ GIDP H++ + P A+ V+Q+ RK+ ++E
Sbjct: 2 EEEMKCTLRKNLDVFAWSDKDMPGIDPNFICHRLAIDPMARVVQQRKRKMGMEKQKAVQE 61
Query: 63 EVAKQLENKFIEPI 76
E K +E KFI +
Sbjct: 62 ETHKLVEAKFIREV 75