Jatropha Genome Database

JcCA0020761.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020761.30 + phase: 0 /partial
         (309 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g118360.1 Proteasome component region PCI chr07_pseud...   587   e-168
IMGA|Medtr7g104030.1 Proteasome component region PCI chr07_pseud...   509   e-145
IMGA|Medtr7g118360.2 Proteasome component region PCI chr07_pseud...   501   e-142

>IMGA|Medtr7g118360.1 Proteasome component region PCI
           chr07_pseudomolecule_IMGAG_V3 27920590-27913718 E
           EGN_Mt090430 20090702
          Length = 959

 Score =  587 bits (1512), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 277/309 (89%), Positives = 284/309 (91%)

Query: 1   MATYAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYVELCVDM 60
           M ++ KPENALKRAEELINVGQKQDALQ LHDLITSKRYRAWQK LE+IMFKYVELCVDM
Sbjct: 1   MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDM 60

Query: 61  RRGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARSXXXXXXXXXXXXXXX 120
           R+GRFAKDGLIQYRI+CQQVNV+SLEEVIKHFMHLSTEKAEQARS               
Sbjct: 61  RKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLE 120

Query: 121 XXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180
             KRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH
Sbjct: 121 ADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180

Query: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI 240
           RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI
Sbjct: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI 240

Query: 241 ATELELWQEAFRSIEDIHGLMCMVKKTPKPSLMVVYYAKLTEIFWISSSHLYHAYAWFKL 300
           ATELELWQEAFRS+EDIHGLMCMVKKTPKPSLM VYY KLTEIFW SSSHLYHAYAWFKL
Sbjct: 241 ATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWKSSSHLYHAYAWFKL 300

Query: 301 FTLQKSFNK 309
           F LQKSFNK
Sbjct: 301 FLLQKSFNK 309


>IMGA|Medtr7g104030.1 Proteasome component region PCI
           chr07_pseudomolecule_IMGAG_V3 23489996-23484670 E
           EGN_Mt090430 20090702
          Length = 850

 Score =  509 bits (1312), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/309 (79%), Positives = 264/309 (85%), Gaps = 1/309 (0%)

Query: 1   MATYAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYVELCVDM 60
           MA + K ENALKRAEELINV QKQ ALQ LHD+ITSKRYR+WQ+  EKIMFKYVELCVD+
Sbjct: 1   MALFLK-ENALKRAEELINVEQKQGALQTLHDVITSKRYRSWQEIQEKIMFKYVELCVDL 59

Query: 61  RRGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARSXXXXXXXXXXXXXXX 120
           R+G+FAKDGLI YRI+CQQVNV SLEEV+K F+HLSTEKAE+A S               
Sbjct: 60  RKGQFAKDGLIHYRIICQQVNVGSLEEVVKRFIHLSTEKAEKACSQAREMEQALDVDDLE 119

Query: 121 XXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180
             KRPEDL+  YVS EKGKDRSDRELVT  FKFLWETYR VLE+LRNNSK EALYAMTA+
Sbjct: 120 ADKRPEDLLKCYVSEEKGKDRSDRELVTARFKFLWETYRIVLEVLRNNSKFEALYAMTAY 179

Query: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI 240
           RA QFCKQYKR TEFRRLCEI+RNHLANLNKY DQRDRPDLSAPESLQLYLDTRFEQLKI
Sbjct: 180 RALQFCKQYKRKTEFRRLCEILRNHLANLNKYPDQRDRPDLSAPESLQLYLDTRFEQLKI 239

Query: 241 ATELELWQEAFRSIEDIHGLMCMVKKTPKPSLMVVYYAKLTEIFWISSSHLYHAYAWFKL 300
           ATELELW+EAFRS+EDIHGLMCM KKT KPSLM VYYA L EIFWISSSHLYHAYAWFKL
Sbjct: 240 ATELELWKEAFRSVEDIHGLMCMAKKTLKPSLMTVYYATLIEIFWISSSHLYHAYAWFKL 299

Query: 301 FTLQKSFNK 309
           F LQKSFNK
Sbjct: 300 FLLQKSFNK 308


>IMGA|Medtr7g118360.2 Proteasome component region PCI
           chr07_pseudomolecule_IMGAG_V3 27920590-27913718 E
           EGN_Mt090430 20090702
          Length = 910

 Score =  501 bits (1289), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 235/260 (90%), Positives = 239/260 (91%)

Query: 50  MFKYVELCVDMRRGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARSXXXX 109
           MFKYVELCVDMR+GRFAKDGLIQYRI+CQQVNV+SLEEVIKHFMHLSTEKAEQARS    
Sbjct: 1   MFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQA 60

Query: 110 XXXXXXXXXXXXXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNS 169
                        KRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNS
Sbjct: 61  LEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNS 120

Query: 170 KLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQL 229
           KLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQL
Sbjct: 121 KLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQL 180

Query: 230 YLDTRFEQLKIATELELWQEAFRSIEDIHGLMCMVKKTPKPSLMVVYYAKLTEIFWISSS 289
           YLDTRFEQLKIATELELWQEAFRS+EDIHGLMCMVKKTPKPSLM VYY KLTEIFW SSS
Sbjct: 181 YLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWKSSS 240

Query: 290 HLYHAYAWFKLFTLQKSFNK 309
           HLYHAYAWFKLF LQKSFNK
Sbjct: 241 HLYHAYAWFKLFLLQKSFNK 260