Jatropha Genome Database

JcCA0020761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020761.20 - phase: 0 
         (250 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g100240.1 hypothetical protein chr01_pseudomolecule_I...    55   3e-08

>IMGA|Medtr1g100240.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 20729504-20728769 H
           EGN_Mt090430 20090702
          Length = 230

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 170 RSTSDTMNLQQAPSRISTTHRKLKMAQSSSNQETSEREDRGGEQQELCKKRILMGEKCRP 229
           R    +    + PS++     KLKM +S   ++ +   +   + +ELCKKRILMG++C+P
Sbjct: 145 RRKVSSWRFVRIPSKLVVIRLKLKMIKSFMKKKVTVNFEHEDDDRELCKKRILMGQRCKP 204

Query: 230 LSYSG--TLQYDKDGTLLPDAI 249
           L       L Y+ D  LLP AI
Sbjct: 205 LCSLSPYYLGYETDRLLLPGAI 226