Jatropha Genome Database

JcCA0020601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020601.20 + phase: 0 
         (228 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160990.1 hypothetical protein chr04_pseudomolecule_I...    82   3e-16

>IMGA|Medtr4g160990.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 40994076-40995357 E
           EGN_Mt090430 20090702
          Length = 207

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 93/202 (46%), Gaps = 35/202 (17%)

Query: 31  PARKIRRLDXXXXXXXXXXXXXXXXXXVFVGGVEEKQQPMVDSGVGNQERAIVVFKPVKT 90
           PA KIRRLD                       VEE+ + +    V N ERA+V+FKP+  
Sbjct: 33  PATKIRRLDPE-----------------LPPIVEEEGESL---PVPNDERALVLFKPMNL 72

Query: 91  NPXXXXXXXXXXXXXXXXXYGIKSQFLRSSCNGNIRLAEEEREATNECMAVVPWVPSQAA 150
           +                    IK+  L  S   +    +++ E  N  +A+VPWVP Q +
Sbjct: 73  H----SPSDFSLTLSSDLISHIKNNQLSWSKQCDYSDNQDQNEEDNRRLAIVPWVP-QPS 127

Query: 151 FARGIDTSQAEAPDLMEAEQVGEE------TMEIEFEGNNTIQSNELESGGMMSGTQGLP 204
            +   D + +   +LMEA+++GEE       M++E E NN+   N      +    +G  
Sbjct: 128 TSCSEDKNNSNTIELMEADEMGEEQEDEGAMMDVEQEDNNSSNYNYPAMLNLHHQAEGF- 186

Query: 205 QWQQQHCLIPQLPQNTSTPITW 226
              QQHC +PQ+PQNTSTPITW
Sbjct: 187 ---QQHCFLPQIPQNTSTPITW 205