Jatropha Genome Database

JcCA0020601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020601.10 - phase: 0 /partial
         (78 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160950.2 Mevalonate and galactokinase chr04_pseudomo...   100   2e-22
IMGA|Medtr4g160950.1 Mevalonate and galactokinase; chr04_pseudom...   100   2e-22
IMGA|Medtr4g160950.3 hypothetical protein chr04_pseudomolecule_I...    98   9e-22

>IMGA|Medtr4g160950.2 Mevalonate and galactokinase
          chr04_pseudomolecule_IMGAG_V3 40948008-40941406 E
          EGN_Mt090430 20090702
          Length = 308

 Score =  100 bits (249), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/60 (76%), Positives = 51/60 (85%)

Query: 16 QLNRIRKVVSAMAGRSPEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINRGILLGFIPSG 75
          +LN +R+ VS MA    E+VRVVVSPYRICPLGAHIDHQGGTV AMTIN+GILLGF PSG
Sbjct: 11 ELNEMREKVSQMAKVKKEDVRVVVSPYRICPLGAHIDHQGGTVLAMTINKGILLGFTPSG 70


>IMGA|Medtr4g160950.1 Mevalonate and galactokinase;
          chr04_pseudomolecule_IMGAG_V3 40948008-40939554 E
          EGN_Mt090430 20090702
          Length = 437

 Score =  100 bits (249), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/60 (76%), Positives = 51/60 (85%)

Query: 16 QLNRIRKVVSAMAGRSPEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINRGILLGFIPSG 75
          +LN +R+ VS MA    E+VRVVVSPYRICPLGAHIDHQGGTV AMTIN+GILLGF PSG
Sbjct: 11 ELNEMREKVSQMAKVKKEDVRVVVSPYRICPLGAHIDHQGGTVLAMTINKGILLGFTPSG 70


>IMGA|Medtr4g160950.3 hypothetical protein
          chr04_pseudomolecule_IMGAG_V3 40948008-40946204 E
          EGN_Mt090430 20090702
          Length = 91

 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 52/63 (82%)

Query: 16 QLNRIRKVVSAMAGRSPEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINRGILLGFIPSG 75
          +LN +R+ VS MA    E+VRVVVSPYRICPLGAHIDHQGGTV AMTIN+GILLGF PSG
Sbjct: 11 ELNEMREKVSQMAKVKKEDVRVVVSPYRICPLGAHIDHQGGTVLAMTINKGILLGFTPSG 70

Query: 76 DTK 78
            +
Sbjct: 71 SDE 73