Jatropha Genome Database
- JcCA0020581.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0020581.20 + phase: 2 /TE
(950 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 557 e-159
IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 226 4e-59
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 202 9e-52
IMGA|Medtr6g077300.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V... 135 1e-31
IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H... 134 2e-31
IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61 17375... 133 4e-31
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 129 6e-30
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 129 6e-30
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 121 2e-27
IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein, chr0... 114 3e-25
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 112 1e-24
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 112 1e-24
IMGA|Medtr6g077290.1 Ribonuclease H, putative chr06_pseudomolecu... 102 9e-22
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 99 1e-20
IMGA|Medtr4g047400.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V... 86 8e-17
IMGA|Medtr4g047190.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V... 86 8e-17
IMGA|Medtr4g047410.1 gag-pol polyprotein, putative chr04_pseudom... 82 2e-15
IMGA|Medtr4g047200.1 gag-pol polyprotein, putative chr04_pseudom... 82 2e-15
IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 80 4e-15
IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H... 71 2e-12
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 60 6e-09
IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87... 59 2e-08
IMGA|Medtr2g120570.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V... 57 3e-08
IMGA|Medtr1g107950.1 gag-pol polyprotein, related chr01_pseudomo... 55 2e-07
IMGA|Medtr1g107770.1 gag-pol polyprotein, related chr01_pseudomo... 55 2e-07
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch... 54 4e-07
IMGA|Medtr6g059710.1 GAG-POL precursor, putative chr06_pseudomol... 52 2e-06
IMGA|Medtr6g008710.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V... 51 3e-06
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 557 bits (1436), Expect = e-159, Method: Compositional matrix adjust.
Identities = 266/586 (45%), Positives = 385/586 (65%), Gaps = 27/586 (4%)
Query: 89 THVDDMVVKSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEI 148
+VDDM+VKS E+H L K F RLRKY L+LNP KC FG SG L +VS+KGIE+
Sbjct: 255 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 314
Query: 149 DPSKAKAILEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDC 208
DP K +AI EMPAP+TEK+VRGFLGRL YISRFI+ + TCGPIFKLLRK + WN++C
Sbjct: 315 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC 374
Query: 209 QKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKR 268
Q+AFD +K YLL PPIL PP G+PL++YL+V +E+MG +L QQ E + E+ +YYLSK+
Sbjct: 375 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKK 434
Query: 269 MLDYELKYNKIEKLCLALVWACKKLQHYLSSYTTYVIFESNPLKFLMERPTLDSKMAKWV 328
D E +Y +EK C AL WA K+L+HYL ++TT++I +P+K++ E+ + K+A+W
Sbjct: 435 FTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQ 494
Query: 329 SVLAAYDLKSVQRKAVKGGALADQLAELPVEDQMP-EVEFLDEDLLSFESE--------- 378
+L+ Y + +KA+KG LAD LA P++D P E +F DE+++ +S+
Sbjct: 495 MLLSEYYIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIDE 554
Query: 379 ------VWEMYFDGASNYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLE 432
W + FDGA N +G G+G V +P G ++P ++ F+CTNN AEYEACI G+E
Sbjct: 555 GPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIE 614
Query: 433 AALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAK 492
A++ IK L ++ DS L+++Q +W+ +L+PY L F + H++PR +
Sbjct: 615 EAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDE 674
Query: 493 NQFADALATLASMVNIGGDQVIRPLTVRLQKQPAHIM-----------NLVDDKPWYWDI 541
NQ ADALATL+SM + + + V+ ++P+H+ N+VD KPWY+DI
Sbjct: 675 NQMADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDI 734
Query: 542 QNYLQNEAYPEGSTKTDQQTLRQLASGYFLTGGVLYKRSCNGLHLRCVDEAEAQTIMDSL 601
+ +L + YP G++K D++TLR+LAS + L G +LYKR+ + + LRCVDE EA+ +M +
Sbjct: 735 KQFLLSREYPSGASKQDKKTLRRLASRFLLNGDILYKRNYDMVLLRCVDEHEAEQLMHDV 794
Query: 602 HNGESGPHMHGIALARKIVNLGYYWSTMNADCMRHAQKCHECQIFC 647
H+G G H G ++RK++ GYYW M DC ++A+KCH+CQI+
Sbjct: 795 HDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYA 840
>IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
13291307-13288982 H EGN_Mt090430 20090702
Length = 695
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 155/516 (30%), Positives = 257/516 (49%), Gaps = 96/516 (18%)
Query: 140 MVSRKGIEIDPSKAKAILEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKG 199
M++R+G+E++P K KAI++M +P KEV+ GR+ ++RF++ AD P F+LL K
Sbjct: 1 MLTRRGVEVNPEKCKAIMDMRSPTDAKEVQKLTGRIASLTRFLSCSADKNLPFFQLLPKN 60
Query: 200 VAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVE 259
W E+C+ AF ++K++L +PPIL P+L PL+LYL+V E A + L Q+ + +
Sbjct: 61 ENFCWTEECEGAFQKLKEFLTTPPILVKPKLSAPLILYLAVSEHACSSALVQEVR--KEQ 118
Query: 260 NVVYYLSKRMLDYELKYNKIEKLCLALVWACKKLQHYLSSYTTYVIFESNPLKFLMERPT 319
VY+ SK + E++Y KIEK+ LALV + +KL+ Y S+T ++ + P++ ++++P
Sbjct: 119 KPVYFTSKVLHGAEVRYQKIEKVALALVSSARKLRPYFQSHTI-IVRTNQPIRQVLQKPD 177
Query: 320 LDSKM------AKWV-SVLAAYDLKSVQRKAVKGGALADQLAELPVEDQMPEVEFLDEDL 372
L +M AKWV SV + +LK
Sbjct: 178 LAGRMIECMEAAKWVLSVDGSSNLKG---------------------------------- 203
Query: 373 LSFESEVWEMYFDGASNYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLE 432
G GV + P G + +++ DF +NN+AEYEA G+
Sbjct: 204 ------------------SGAGV--TLEGPYGVLIEQSLRFDFKSSNNQAEYEALFAGMR 243
Query: 433 AALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAK 492
AL+ +K L+ DS L+ Q ++ K+ +L+ YL + E +
Sbjct: 244 LALKVVVKELEAKSDSQLVFRQVTGNFQTKDPQLLMYLESVIE----------------Q 287
Query: 493 NQFADALATLASMVNIGGDQVIRPLTVRLQKQPA----HIMNLVDD-KPWYWDIQNYLQN 547
N AD LA LAS G ++ + T+ KQP+ + L +D K W I YL++
Sbjct: 288 NGRADLLAKLASTKRQGNNRSVIQETL---KQPSIEQKEFLFLTEDFKSWMGHIIRYLKD 344
Query: 548 EAYP---EGSTKTDQQTLRQLASGYFLTGGVLYKRSCNGLHLRCVDEAEAQTIMDSLHNG 604
+ P E ++K ++ ++ + Y L+ R + HL+C+ +A+ ++ + G
Sbjct: 345 DQLPMEEEQASKVKKRAIKFVVIAY-----QLFIRGFSSPHLKCLAPQQAEYVIAEVDEG 399
Query: 605 ESGPHMHGIALARKIVNLGYYWSTMNADCMRHAQKC 640
G H+ G ALA K++ GYYW TM DC ++ +KC
Sbjct: 400 VCGTHIGGRALAAKVLRAGYYWPTMKEDCSKYVKKC 435
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 194/368 (52%), Gaps = 36/368 (9%)
Query: 89 THVDDMVVKSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEI 148
++DD+V K+K HT LE+ ++RKY ++LNP KC FG G FL +++R GIE
Sbjct: 145 VYIDDLVAKTKEGLSHTDDLEEILGQVRKYRIRLNPTKCSFGVQVGKFLGFLLTRWGIEA 204
Query: 149 DPSKAKAILEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDC 208
+ K +AI+ M +P KEV+ GRL +SR ++ D F ++K +W +C
Sbjct: 205 NTDKCQAIINMRSPSNVKEVQQLTGRLAALSRCLSCAGDKAFSFFASIKKKEKFEWTAEC 264
Query: 209 QKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKR 268
+ AF ++K +L S P+LQ P + LYL + E AM +L +++E E +YY+S+
Sbjct: 265 EDAFQQIKMFLSSLPLLQRPNKNAIIFLYLVISENAMSTVLVEESEVG--EKPIYYVSRV 322
Query: 269 MLDYELKYNKIEKLCLALVWACKKLQHYLSSYTTYVIFESN-PLKFLMERPTLDSKMAKW 327
+L Y KIE L LA+V +KL+ Y S+ ++ +SN P++ ++ +P L +M
Sbjct: 323 FKGAKLPYQKIECLALAVVTTARKLRPYFQSHK--IVVKSNYPIRQVLGKPDLAGRMVA- 379
Query: 328 VSVLAAYDLKSVQRKAVKGGALADQLAEL--PVEDQMPEVEFLDEDLLSFESEVWEMYFD 385
+K LAD + EL P++D++P VW + D
Sbjct: 380 --------------GNIKSQVLADFVVELTSPIQDEVP--------------YVWLLSVD 411
Query: 386 GASNYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEKGIKVLKVF 445
G+SN +G GV+ + P + +++ +F +NN+ EYEA I G+ A E G + L+
Sbjct: 412 GSSNLKDSGAGVILEGPNDLLIEQSLRFEFKASNNQVEYEALIAGMVLAQEMGAENLRAK 471
Query: 446 EDSNLIVS 453
DS L+ S
Sbjct: 472 SDSQLVTS 479
>IMGA|Medtr6g077300.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V3
15275252-15275869 F EGN_Mt090430 20090702
Length = 179
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 107/177 (60%), Gaps = 16/177 (9%)
Query: 309 NPLKFLMERPTLDSKMAKWVSVLAAYDLKSVQRKAVKGGALADQLAELPVEDQMP-EVEF 367
+P+K++ E+ + K+A+W +L+ YD+ +KA+KG LAD LA P++D P E +F
Sbjct: 2 DPIKYIFEKAVVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDF 61
Query: 368 LDEDLLSFESE---------------VWEMYFDGASNYHGNGVGVVFKTPCGEYVPIAVK 412
DE+++ +S+ W + FDGA N +G G+G V +P G ++P +
Sbjct: 62 PDEEIMYLKSKDCDEPSINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTAR 121
Query: 413 LDFDCTNNEAEYEACIKGLEAALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPY 469
+ F+CTNN AEYEACI G+E A++ IK L ++ DS L+++Q +W+ +L+PY
Sbjct: 122 ILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPY 178
>IMGA|Medtr6g077310.1 Polynucleotidyl transferase, Ribonuclease H
fold chr06_pseudomolecule_IMGAG_V3 15275871-15277296 E
EGN_Mt090430 20090702
Length = 445
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 85/117 (72%)
Query: 530 NLVDDKPWYWDIQNYLQNEAYPEGSTKTDQQTLRQLASGYFLTGGVLYKRSCNGLHLRCV 589
N+VD +PWY+DI+ +L + YP G++K D++TLR+LA + L G +LYKR+ + + LRCV
Sbjct: 37 NVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCV 96
Query: 590 DEAEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWSTMNADCMRHAQKCHECQIF 646
DE EA+ +M +H+G G H G ++RK++ GYYW TM DC ++A+KCH+CQI+
Sbjct: 97 DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIY 153
>IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61
17375-18058 H EGN_Mt090430 20090702
Length = 227
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 16/230 (6%)
Query: 175 LQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPL 234
L Y+SRFI + P KLLRK + W + C+ A +K+ L +PP+L P G+ L
Sbjct: 2 LTYLSRFIVKSTQHALPFLKLLRKEIKFDWIDKCENALKHLKEILSAPPVLSRPEQGEVL 61
Query: 235 LLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACKKLQ 294
LYLS+ A+ A+L ++ + + VY+ SK++L E + KIEK+ LAL+ A ++L+
Sbjct: 62 YLYLSISSTAVSAVLIRETAEG--QKSVYFTSKKLLGPETRNQKIEKVALALLTASQRLR 119
Query: 295 HYLSSYTTYVIFESNPLKFLMERPTLDSKMAKWVSVLAAYDLKSVQRKAVKGGALADQLA 354
Y ++T V + P++ ++ RP + +M KW L+ +D+ RKA+K AD L
Sbjct: 120 QYFFAHTVIVKID-QPIRQILGRPNVAGRMMKWSLELSEFDIHYESRKALKAQVFADFLT 178
Query: 355 ELPVEDQMPEVEFLDEDLLSFESEVWEMYFDGASNYHGNGVGVVFKTPCG 404
E+ + + +E W ++ DG+SN G+G G++ + G
Sbjct: 179 EMTFPTE-------------YNTEEWTVFVDGSSNSKGSGAGIIVEDNKG 215
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold AC229695.5 96798-94993 H
EGN_Mt090430 20090702
Length = 555
Score = 129 bits (325), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 137/288 (47%), Gaps = 10/288 (3%)
Query: 92 DDMVVKSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEIDPS 151
DD++V SK E H L L+++ L N KC FG +L H++S +G+ D
Sbjct: 18 DDILVYSKDVEHHKHHLGAVLALLKEHQLVANYKKCTFGQHQLEYLGHIISAQGVAADQK 77
Query: 152 KAKAILEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKA 211
K +L P PK K +RGFLG Y RF+ P+ LL+K + WNE+ Q +
Sbjct: 78 KVDVMLTWPRPKDLKSLRGFLGLTGYYRRFVRNYGSIAKPLTHLLKKDNFL-WNEEAQLS 136
Query: 212 FDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRMLD 271
FD +K+ + PIL P P ++ +GA+L QQ V +LS+ + +
Sbjct: 137 FDTLKKAMAELPILSVPNFSIPFVIETDASNTGLGAILMQQGRP------VAFLSQPLSE 190
Query: 272 YELKYNKIEKLCLALVWACKKLQHYLSSYTTYVIFESNPLKFLMERPTLDSKMAKWVSVL 331
+ + E+ +A+V+A +K +HYL + + LKFL ++ L + KW S L
Sbjct: 191 RAQRKSIYERELMAIVFAVQKWRHYLMGNHFIIHTDQKSLKFLQDQRVLGADQFKWTSKL 250
Query: 332 AAYDLKSVQRKAVKGGALADQLAELPVEDQMPEVEFLDEDLLSFESEV 379
+D + + + A AD L+ + + F D + +E+EV
Sbjct: 251 MGFDFEIIYKPGSDNRA-ADALSRRMTYAAISMIHFADYE--EWEAEV 295
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 73/98 (74%)
Query: 89 THVDDMVVKSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEI 148
+VDDM+VKS E+H L K F RLRKY L+LNP KC FG SG L +VS+KGIE+
Sbjct: 123 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFVVSQKGIEV 182
Query: 149 DPSKAKAILEMPAPKTEKEVRGFLGRLQYISRFINQLA 186
DP K +AI EMPAP+TEK+VRGFLGRL YISRFI+ +
Sbjct: 183 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMT 220
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 8/263 (3%)
Query: 92 DDMVVKSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEIDPS 151
DD++V S T H LE+ L+ ++L KC FG T +L H VS +G+ +D S
Sbjct: 738 DDILVYSPTWHAHLAHLEEVLQLLQTHSLFAKISKCCFGMTQIDYLGHTVSGQGVAMDCS 797
Query: 152 KAKAILEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKA 211
K KA+L+ P P K++RGFLG Y RFI A P+ LL+K + KW E+ Q A
Sbjct: 798 KVKAVLDWPTPTNLKQLRGFLGLTGYYRRFIQGYAAVASPLTDLLKKD-SFKWTENAQLA 856
Query: 212 FDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRMLD 271
F+R+KQ L P+L P K +L +GA+L+Q ++ + + SK++
Sbjct: 857 FERLKQSLTKAPVLSLPDFSKSFVLETDASGFGIGAVLSQG------KHPIAFFSKKLSP 910
Query: 272 YELKYNKIEKLCLALVWACKKLQHYLSSYTTYVIFESNPLKFLMERPTLDSKMAKWVSVL 331
K + + A+ A K +HYL + + + LK L ++ + W+
Sbjct: 911 RMQKQSAYVRELYAISEAISKFRHYLIGHQFIIRTDQKSLKSLTDQAIQTPEQQNWLHKF 970
Query: 332 AAYDLKSVQRKAVKGGALADQLA 354
Y+ +++ K K AD L+
Sbjct: 971 LGYNF-TIEYKPGKDNIAADALS 992
>IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein,
chr03_pseudomolecule_IMGAG_V3 44105220-44104602 H
EGN_Mt090430 20090702
Length = 181
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 26/207 (12%)
Query: 120 LKLNPVKCLFGATSGVFLRHMVSRKGIEIDPSKAKAILEMPAPKTEKEVRGFLGRLQYIS 179
++LN KC FG +G FL ++ +GIE + K AI E+P P ++K ++ G L +S
Sbjct: 1 MRLNLEKCTFGVQAGKFLGFYLTERGIEANRDKCHAITELPTPHSKKCIQILNGMLIALS 60
Query: 180 RFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLS 239
RF+ + A+ P FKLLRK W ++C+ A + +K+ L +PP+L P G+ L YLS
Sbjct: 61 RFVAKSAEHALPFFKLLRKETKFGWTDECENALNHLKETLSAPPVLSRPYEGEVLYQYLS 120
Query: 240 VIEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACKKLQHYLSS 299
V A+G E +Y +I+K+ LAL+ A ++L+ Y +
Sbjct: 121 VSSNALGP-------------------------ETRYQRIDKVALALLIAARRLRQYFLA 155
Query: 300 YTTYVIFESNPLKFLMERPTLDSKMAK 326
+T V + P++ ++ RP + +M K
Sbjct: 156 HTVEVRTD-QPIRQILGRPDVAGRMMK 181
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 8/263 (3%)
Query: 99 KTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEIDPSKAKAILE 158
K A +H T L+ +L + L KCLFG +L H++S+KGI+ DPSK +A++E
Sbjct: 123 KFAADHLTHLQLILTKLLEAQFFLKQSKCLFGQRQLEYLGHIISQKGIQADPSKLQAMVE 182
Query: 159 MPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQY 218
P P + +R FLG + +FI A P+ LL+K I W+ + + +F +K+
Sbjct: 183 WPQPTSTTLLRRFLGLTGFYRKFIKGYASIAAPLTNLLKKDSFI-WSPEAEHSFQTLKKA 241
Query: 219 LLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNK 278
+ P L P P L +AMGA+L QQ + + + SK++ L+ +
Sbjct: 242 MTEAPTLAVPDFTLPFDLETDASAKAMGAVLMQQ------NHPIAFFSKQLCQRLLRSST 295
Query: 279 IEKLCLALVWACKKLQHYLSSYTTYVIFESNPLKFLMERPTLDSKMAKWVSVLAAYDLKS 338
+ A+ A KK + YL + + + LK L+ + + ++S L YD+K
Sbjct: 296 YVRELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQVIQTPEQQVYLSKLLGYDVK- 354
Query: 339 VQRKAVKGGALADQLAELPVEDQ 361
+Q K+ K +AD L+ + Q
Sbjct: 355 IQFKSGKTNVVADALSRIDTPSQ 377
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
20090702
Length = 705
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 130/318 (40%), Gaps = 13/318 (4%)
Query: 42 RQRENDIHHGV-----GNLLLQGYAFWAQKCRGNLSKNGNDYLPXHDSQRSRTHVDDMVV 96
R ENDIH G+ F ND + DD+++
Sbjct: 251 RVHENDIHKTAFRTHNGHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILI 310
Query: 97 KSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEIDPSKAKAI 156
SK EH + L + L N KC FG +L H++S KG+ +DP K + I
Sbjct: 311 YSKDLAEHQSHLNQVLTILFSNCFVANLSKCKFGCVEVDYLGHVISGKGVAVDPEKIRCI 370
Query: 157 LEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVK 216
LE P PK K VRGFLG Y +F+ P+ +L +K W+ +AF+R+K
Sbjct: 371 LEWPEPKNVKGVRGFLGLTGYYRKFVKDYGKIAKPLTELTKKD-GFSWSPTAAEAFNRLK 429
Query: 217 QYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKY 276
+ SP +L P P + +GA+L Q + V Y SK + L
Sbjct: 430 HIMTSPLVLVLPNFSLPFEIECDAAGRGIGAVLMQNKQP------VAYFSKALSAGNLSK 483
Query: 277 NKIEKLCLALVWACKKLQHYLSSYTTYVIFESNPLKFLMERPTLDSKMAKWVSVLAAYDL 336
+ EK +ALV + +HYL V + LK +++ W++ L Y
Sbjct: 484 SVYEKELMALVLCIQHWRHYLLGKAFTVHTDHKSLKHFLQQRVTSPDQQCWLAKLLGYQF 543
Query: 337 KSVQRKAVKGGALADQLA 354
+ + ++ A AD L+
Sbjct: 544 EVKYKPGLENKA-ADALS 560
>IMGA|Medtr6g077290.1 Ribonuclease H, putative
chr06_pseudomolecule_IMGAG_V3 15274861-15275193 H
EGN_Mt090430 20090702
Length = 110
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 64/91 (70%)
Query: 196 LRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAED 255
L K I WN++CQ+AFD +K YLL PPIL PP G+PL+LYLSV +E++G +L Q+ E
Sbjct: 19 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 78
Query: 256 TRVENVVYYLSKRMLDYELKYNKIEKLCLAL 286
+ E+ +YYLSK+ D E +Y +EK C AL
Sbjct: 79 GKKEHAIYYLSKKFTDCETRYTMLEKTCCAL 109
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 8/265 (3%)
Query: 96 VKSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEIDPSKAKA 155
++ ++ ++H L L ++ KC+F + +L H++S KG++ D K +A
Sbjct: 717 LRRRSLDDHLIHLRLILDLLASHHFVAKMSKCVFAVDTIDYLGHIISHKGVQPDEDKIQA 776
Query: 156 ILEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRV 215
IL P P++ +RGFLG + + RF+ A P+ LLR N + AF ++
Sbjct: 777 ILSWPTPRSLTTLRGFLGLISFYRRFVRHYATLAAPLTDLLR-STKFTLNATAEAAFSKL 835
Query: 216 KQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELK 275
K+ + + P+L P K ++ A+GA+L+Q+ + + SK+M +
Sbjct: 836 KEQITTTPVLILPNFSKLFVVETDASAVAIGAVLSQEGPP------LAFFSKKMCNRMQS 889
Query: 276 YNKIEKLCLALVWACKKLQHYLSSYTTYVIFESNPLKFLMERPTLDSKMAKWVSVLAAYD 335
+ + A+ A KK YL ++ + LK L+ + + KWVS L ++
Sbjct: 890 SSVYVREMYAITEAIKKWHQYLIGRHFHIYTDQKSLKNLLVQTIQTPEQQKWVSKLQGFN 949
Query: 336 LKSVQRKAVKGGALADQLAELPVED 360
+ + K +AD L+ E+
Sbjct: 950 FEFFYKPG-KANQVADALSRRTSEE 973
>IMGA|Medtr4g047400.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
11037309-11036614 H EGN_Mt090430 20090702
Length = 231
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 18/228 (7%)
Query: 326 KWVSVLAAYDLKSVQRKAVKGGALADQLAELPVEDQMPEVEFLDEDLLSFESEVWEMYFD 385
KW +D+ RKA+K AD AE+ D + E +W +Y D
Sbjct: 2 KWSLEFLEFDIHYESRKALKAHMFADFKAEMTFPDD------------ANEEGIWIIYVD 49
Query: 386 GASNYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEKGIKVLKVF 445
G+SN G+G GV+ + +++ L F TNN AEYEA + GL A + K +K+
Sbjct: 50 GSSNSKGSGAGVIVDNSNKIVIELSLGLSFTMTNNTAEYEAYLVGLRVAKDMEAKRVKIC 109
Query: 446 EDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAKNQFADALATLASM 505
DS L SQ +++++EE Y+ + + F+ + ++ R N + L+ LAS
Sbjct: 110 TDSQLAASQVSGEFQVQEEHRQEYVLVVQAKIKEFDSVEVEHVLREINTRENILSKLAST 169
Query: 506 VNIGGD-----QVIRPLTVRLQKQPAHIMNLV-DDKPWYWDIQNYLQN 547
G+ +V+ +V+ QK H +N++ + W + Y+ N
Sbjct: 170 RTTNGNITVIQEVLTEPSVQRQKALLHEINVIFKVQDWRGHLIRYISN 217
>IMGA|Medtr4g047190.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
10902288-10901593 H EGN_Mt090430 20090702
Length = 231
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 18/228 (7%)
Query: 326 KWVSVLAAYDLKSVQRKAVKGGALADQLAELPVEDQMPEVEFLDEDLLSFESEVWEMYFD 385
KW +D+ RKA+K AD AE+ D + E +W +Y D
Sbjct: 2 KWSLEFLEFDIHYESRKALKAHMFADFKAEMTFPDD------------ANEEGIWIIYVD 49
Query: 386 GASNYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEKGIKVLKVF 445
G+SN G+G GV+ + +++ L F TNN AEYEA + GL A + K +K+
Sbjct: 50 GSSNSKGSGAGVIVDNSNKIVIELSLGLSFTMTNNTAEYEAYLVGLRVAKDMEAKRVKIC 109
Query: 446 EDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAKNQFADALATLASM 505
DS L SQ +++++EE Y+ + + F+ + ++ R N + L+ LAS
Sbjct: 110 TDSQLAASQVSGEFQVQEEHRQEYVLVVQAKIKEFDSVEVEHVLREINTRENILSKLAST 169
Query: 506 VNIGGD-----QVIRPLTVRLQKQPAHIMNLV-DDKPWYWDIQNYLQN 547
G+ +V+ +V+ QK H +N++ + W + Y+ N
Sbjct: 170 RTTNGNITVIQEVLTEPSVQRQKALLHEINVIFKVQDWRGHLIRYISN 217
>IMGA|Medtr4g047410.1 gag-pol polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 11043520-11043164 H
EGN_Mt090430 20090702
Length = 118
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 175 LQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPL 234
L + RF+ + A P F LL+K +W +C+KA +K L +PP+L P G+ L
Sbjct: 2 LTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETL 61
Query: 235 LLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACK 291
LYLSV EA+ L E + Y+ SK +L E +Y KIEK+ LALV A +
Sbjct: 62 YLYLSVSSEAVSGTL--NIETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTAAR 116
>IMGA|Medtr4g047200.1 gag-pol polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 10908500-10908144 H
EGN_Mt090430 20090702
Length = 118
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 175 LQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPL 234
L + RF+ + A P F LL+K +W +C+KA +K L +PP+L P G+ L
Sbjct: 2 LTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETL 61
Query: 235 LLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACK 291
LYLSV EA+ L E + Y+ SK +L E +Y KIEK+ LALV A +
Sbjct: 62 YLYLSVSSEAVSGTL--NIETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTAAR 116
>IMGA|Medtr3g169280.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
44103723-44102826 H EGN_Mt090430 20090702
Length = 258
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 109/267 (40%), Gaps = 72/267 (26%)
Query: 378 EVWEMYFDGASNYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEK 437
E W ++ +SN G+G G++ + + +A + GL A +
Sbjct: 10 EEWTVFVYESSNSKGSGAGIIVE----------------------DNKAFLAGLRTAQDM 47
Query: 438 GIKVLKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAKNQFAD 497
G K +K+F DS L+ SQ ++ +KEE L Y+ + E + E + ++PR +N AD
Sbjct: 48 GEKKVKIFTDSQLVASQVTGEFHVKEEHLQKYVQFVLEKMKEIEAVEVTHVPREQNTRAD 107
Query: 498 ALATLASMVNIGGDQVIRPLTVRLQKQPAHIMNLVDDKPWYWDIQNYLQNEAYPEGSTKT 557
L+ LAS G++ + IQ L NE + K
Sbjct: 108 ILSKLASTRTANGNKTM--------------------------IQEVL-NETSIQEKAKD 140
Query: 558 DQQTLRQLASGYFLTGGVLYKRSCNGLHLRCVDEAEAQTIMDSLHNGESGPHMHGIALAR 617
+ ++L +H R E Q ++ +H+G G H+ ALA+
Sbjct: 141 EMKSLL--------------------VHFRL---NETQEVLADVHDGICGQHLGAKALAK 177
Query: 618 KIVNLGYYWSTMNADCMRHAQKCHECQ 644
+I+ GYYW TM D + C +CQ
Sbjct: 178 QILRAGYYWPTMLKDTQDYMNLCDKCQ 204
>IMGA|Medtr3g061730.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 14035625-14034550 H
EGN_Mt090430 20090702
Length = 270
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 529 MNLVDDK--PWYWDIQNYLQNEAYPEGSTKTDQQTLRQLASGYFLTGGVLYKRSCNGLHL 586
+NL+ ++ W + YL P + ++Q +R+ AS + LYKR L
Sbjct: 10 VNLIIEREESWMATLLKYLTGSFTPVSAE--EEQVVRKRASKFVNVSRKLYKRGRTNPLL 67
Query: 587 RCVDEAEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWSTMNADCMRHAQKCHECQIF 646
RC+ E E ++ +H G G H+ G ALA K++ GYYW TM D +KC +CQ F
Sbjct: 68 RCLGEDETHLVLLEVHEGVCGSHIRGRALAAKLLRSGYYWPTMLHDSSDFVRKCDKCQKF 127
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 91 VDDMVVKSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEIDP 150
+DDM+VK + +H + L F+++RKYN+ N C FG + F+ ++ KGI+++P
Sbjct: 102 MDDMIVKYREELDHMSHLNVVFIKVRKYNMHSNLENCTFGVKAAKFMGLYLTEKGIKVNP 161
Query: 151 SKAKAILEMPAPKTEKEVR 169
KA ++M P +K ++
Sbjct: 162 DNFKAEVDMELPMKKKGIQ 180
>IMGA|AC135504_5.1 pol-polyprotein, putative AC135504.61 87442-87913
H EGN_Mt090430 20090702
Length = 142
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 574 GVLYKRSCNGLHLRCVDEAEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWSTMNADC 633
G LYKR ++C+ E Q ++ +H+G G H+ +LARK++ GYYW TM D
Sbjct: 3 GTLYKRGFITPLIKCLGPNETQEVLADVHDGICGQHLDVKSLARKVLRAGYYWPTMLKDA 62
Query: 634 MRHAQKCHECQ 644
+ C +CQ
Sbjct: 63 EDYVNLCDKCQ 73
>IMGA|Medtr2g120570.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
28388705-28395880 E EGN_Mt090430 20090702
Length = 412
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 384 FDGAS--NYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEKGIKV 441
FDGAS N G G + ++ G + + TNN AEY A I G+ AL+KG
Sbjct: 245 FDGASKGNPGKAGAGAILRSKDGNLIYRVREGVGIATNNVAEYRAMILGMRHALKKGFTS 304
Query: 442 LKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAKNQFADALAT 501
+ + DS L+ Q WK+K E L EL F ++ R N ADA A
Sbjct: 305 ICIQGDSKLVCMQIDGLWKVKNENLSTLYKVAKELKDKFVSFKISHVLRDLNSEADAQAN 364
Query: 502 LASMVNIGGDQV 513
LA VN+ QV
Sbjct: 365 LA--VNLADGQV 374
>IMGA|Medtr1g107950.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 22894019-22894917 H
EGN_Mt090430 20090702
Length = 160
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 200 VAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVE 259
V ++W ++C+ A +K+ L PP P G+ LYLSV E + L ++ ++ + +
Sbjct: 7 VKLEWKDECEVALTHLKKALFQPPTFSQPEEGEISYLYLSVAFEFVSVALIRETKEDK-K 65
Query: 260 NVVYYLSKRMLDYELKYNKIEKLCLALVWACKKLQHYLSSYTTYVIFES 308
VY++ K + E+ Y IEK +A W + +L + Y+ FE+
Sbjct: 66 TSVYFMRKALQKLEIHYQIIEK--VASYWRLGDFE-FLKLFELYIKFEA 111
>IMGA|Medtr1g107770.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 22825433-22826331 H
EGN_Mt090430 20090702
Length = 160
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 200 VAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVE 259
V ++W ++C+ A +K+ L PP P G+ LYLSV E + L ++ ++ + +
Sbjct: 7 VKLEWKDECEVALTHLKKALFQPPTFSQPEEGEISYLYLSVAFEFVSVALIRETKEDK-K 65
Query: 260 NVVYYLSKRMLDYELKYNKIEKLCLALVWACKKLQHYLSSYTTYVIFES 308
VY++ K + E+ Y IEK +A W + +L + Y+ FE+
Sbjct: 66 TSVYFMRKALQKLEIHYQIIEK--VASYWRLGDFE-FLKLFELYIKFEA 111
>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
EGN_Mt090430 20090702
Length = 460
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 147 EIDPSKAKAILEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNE 206
++D K +AI + PAP + E R F G + RFI + PI K L KG +KW
Sbjct: 168 QVDEEKVRAIRDWPAPTSVTEKRSFHGLATFYRRFIRYFSIITAPITKCLEKG-KLKWGS 226
Query: 207 DCQKAFDRVKQYLLSPPILQPPRLGK 232
+ +++F +K+ L + P+L P K
Sbjct: 227 EQEQSFALIKKKLCAAPVLPLPNFEK 252
>IMGA|Medtr6g059710.1 GAG-POL precursor, putative
chr06_pseudomolecule_IMGAG_V3 10920548-10921569 E
EGN_Mt090430 20090702
Length = 99
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 586 LRCVDEAEAQTIMDSLHNGESGPHMHGIALARKIVNLGYYWSTMNADCMRHAQKCHECQ 644
L+C+ +E + +H G +G H+ G +LARK GY+W TM D M + KC +CQ
Sbjct: 30 LKCLVPSEVGYALADVHEGIAGQHLRGHSLARKEHRAGYFWLTMKYDAMEYVIKCDKCQ 88
>IMGA|Medtr6g008710.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V3
1223230-1226786 H EGN_Mt090430 20090702
Length = 210
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 416 DCTNNEAEYEACIKGLEAALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDE 475
+ T EAEY A I GL+ A+ KG K + V +S + +Q W+ + L +
Sbjct: 108 NLTQKEAEYRALILGLKQAIMKGFKNITVKGESKFVTNQFGEPWQTADGNLRKLCLEAMK 167
Query: 476 LAQXFEDLSFHYLPRAKNQFADALATLASMVNIG 509
L F+ S HY+P N+ A +A A +N+G
Sbjct: 168 LRNNFDSFSIHYIPSEHNKGASDIANYAIHLNVG 201