Jatropha Genome Database
- JcCA0020581.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0020581.10 - phase: 2 /TE
(269 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 64 1e-10
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 59 2e-09
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 53 1e-07
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 53 2e-07
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 49 2e-06
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 49 3e-06
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 40 PHFYLFQVLVTKKVICLAKEHNGLYYFDTNSSNITLVSL------AANTSTID------- 86
P FYL + K+I LAK+ GLY + T S+ + SL + N S+I
Sbjct: 431 PQFYLTNDQTSLKMIGLAKQVAGLYRY-TPPSDFSSTSLMHSPNKSCNFSSISCNSNNCI 489
Query: 87 ----IWHLHLGHPGQHVYKKFVTLDHNLFFSNKYTSLIWHLAKQTHLPFPTSYISTNSSF 142
+WH LGH K L ++ +N+ I H +KQ HLPF +S +++F
Sbjct: 490 PVAALWHFRLGHLSNQRMIKMSHLYPSIVHNNRDVCDICHFSKQKHLPFSSSLSHASTNF 549
Query: 143 ELIHVNVWRPYSTSFLNGVNFF 164
EL+H ++W P S S ++G +F
Sbjct: 550 ELLHFDIWGPISISSVHGHRYF 571
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 30/140 (21%)
Query: 44 LFQVLVTKKVICLAKEHNGLYYFDTNSSNITLVSLAANTSTIDI----------WHLHLG 93
+ Q T + I LAKE +GLYY +T+ N VS++ ++ +++ WHL LG
Sbjct: 485 IIQEKNTLRKIGLAKEKHGLYYLETDERN--KVSVSNISAQVELHQKHVPDGVLWHLRLG 542
Query: 94 HPGQHVYKKFVTLDHNLFFSNKYTSL---------IWHLAKQTHLPFPTSYISTNSSFEL 144
H ++ D + + Y+ + + + +Q LPFP S + ++F+L
Sbjct: 543 H---------LSHDRMICMNKMYSYVPVSPHTACDVCQMCRQKILPFPISSRNAKTAFDL 593
Query: 145 IHVNVWRPYSTSFLNGVNFF 164
+H ++W P+ST+ ++G +F
Sbjct: 594 VHFDIWGPFSTTSVHGHKYF 613
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 87 IWHLHLGHPGQHVYKKFVTLDHNLFFSNKYTSLIWHLAKQTHLPFPTSYISTNSSFELIH 146
+WH LGH L ++ NK I H A+ LPFP S NS F+L+H
Sbjct: 511 LWHFRLGHLSNQRLSTMSRLYPSIIVDNKAACDICHFARHKKLPFPHSSSHANSKFQLLH 570
Query: 147 VNVWRPYSTSFLNGVNFF 164
++W P + ++++G +F
Sbjct: 571 FDIWGPLAINYVHGHKYF 588
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 87 IWHLHLGHPGQHVYKKFVTLDHNLFFSNKYTSLIWHLAKQTHLPFPTSYISTNSSFELIH 146
+WH LGH L ++ NK I H A+ LPFP S NS F+L+H
Sbjct: 511 LWHFRLGHLSNQRLSTMSRLYPSIIVDNKAACDICHFARHKKLPFPHSSSHANSKFQLLH 570
Query: 147 VNVWRPYSTSFLNGVNFF 164
++W P + ++++G +F
Sbjct: 571 FDIWGPLAINYVHGHKYF 588
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 27/126 (21%)
Query: 40 PHFYLFQVLVTKKVICLAKEHNGLYYFDTNSSNITLVSLAANTSTIDIWHLHLGHPGQHV 99
P+ + Q + K+I LA + +GLY LGH
Sbjct: 445 PNQCIIQDSTSLKMIGLANQQDGLY--------------------------KLGHLSHQR 478
Query: 100 YKKFVTLDHNLFFSNKYTSL-IWHLAKQTHLPFPTSYISTNSSFELIHVNVWRPYSTSFL 158
+L N+ NK + I H AKQ HLPF S S+FEL+H+++W P S S +
Sbjct: 479 MNMMSSLYSNIVSDNKNSVCDICHFAKQKHLPFSISTSHATSNFELLHLDIWGPLSISSI 538
Query: 159 NGVNFF 164
+G +F
Sbjct: 539 HGHKYF 544
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 87 IWHLHLGHPGQHVYKKFVTLDHNLFFSNKYTSLIWHLAKQTHLPFPTSYISTNSSFELIH 146
+WH LGH + L ++ NK+ I H AKQ LP+ +S +S+FEL++
Sbjct: 444 LWHFRLGHLSNQRLSQMHHLYPDIHVDNKFICDICHFAKQRKLPYNSSTSIASSNFELLY 503
Query: 147 VNVWRPYSTSFLNGVNFF 164
+++W P + ++G +F
Sbjct: 504 LDIWGPLAKVSIHGQRYF 521