Jatropha Genome Database

JcCA0020441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020441.10 - phase: 0 /partial
         (227 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233676_14.1 hypothetical protein AC233676.2 65637-60727 E...   222   1e-58
IMGA|AC233676_13.1 hypothetical protein AC233676.2 59489-58753 E...   171   3e-43

>IMGA|AC233676_14.1 hypothetical protein AC233676.2 65637-60727 E
           EGN_Mt090430 20090702
          Length = 177

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/123 (83%), Positives = 115/123 (93%)

Query: 7   LAQLPPDFHMQLYMEASRIIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 66
           LAQLP DFH QLY+E +RIIKE+WWLTD KRSL E+DSAVGYALLDPTWAAQDNTSTAIG
Sbjct: 44  LAQLPSDFHSQLYLETTRIIKENWWLTDVKRSLAEIDSAVGYALLDPTWAAQDNTSTAIG 103

Query: 67  NIVALLHSFFSNLPQEWLEGTHVIIKHLKPITSVAMLRIAFRIMGPLLPRLANAHSLFSK 126
           N+VALLHSFFSNLPQEWLEGT+VIIK L+P+TSVAMLRIAFRIM PLLP+LANAH+LF+K
Sbjct: 104 NVVALLHSFFSNLPQEWLEGTNVIIKQLRPVTSVAMLRIAFRIMSPLLPKLANAHALFNK 163

Query: 127 TLS 129
            L+
Sbjct: 164 GLT 166


>IMGA|AC233676_13.1 hypothetical protein AC233676.2 59489-58753 E
           EGN_Mt090430 20090702
          Length = 104

 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 93/104 (89%)

Query: 124 FSKTLSLLLNTMAEVFGRNSQPSTPVEASEITDLIDFLHHVIHYEGQGGPVQANSKPRPE 183
            S+TLS+LL+ + +VFG+NSQ ST V+ASEI D+IDFLHHVIHYEGQGGPVQA+SKPRP+
Sbjct: 1   MSQTLSILLSVLVDVFGKNSQTSTAVDASEIADIIDFLHHVIHYEGQGGPVQASSKPRPD 60

Query: 184 VLALCGRAAENLRPDIQHLLSHLKPDTNSSIYAATHPKLVQNPS 227
           VLAL GRAAE+LRPDIQHLLSHL  D NSS+YAA+HPKLV NP+
Sbjct: 61  VLALIGRAAESLRPDIQHLLSHLNTDVNSSVYAASHPKLVPNPT 104