Jatropha Genome Database

JcCA0020001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020001.10 + phase: 0 /pseudo/partial
         (672 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g098610.1 Zinc finger, C2H2-type chr04_pseudomolecule...   298   5e-81
IMGA|Medtr7g126610.1 Regulation of nuclear pre-mRNA protein; Zin...   139   7e-33

>IMGA|Medtr4g098610.1 Zinc finger, C2H2-type
           chr04_pseudomolecule_IMGAG_V3 21296547-21293984 E
           EGN_Mt090430 20090702
          Length = 434

 Score =  298 bits (763), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 151/228 (66%), Positives = 178/228 (78%), Gaps = 4/228 (1%)

Query: 422 MIHVPQNVGPV--APNQPPGSAFSGLIGSLMAQGLISLTKQTPGQDSVGLEFNADLIKVR 479
           ++ +P N  P     +Q P   +S L GSLMAQG+ISLT Q P QD VG+EF+ + +KVR
Sbjct: 198 LLQIPPNPNPCPSVSSQQPTVGYSNLFGSLMAQGVISLTNQAPAQDFVGIEFDPNTLKVR 257

Query: 480 HESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKHKPSRKWFVDTSM 539
           HESAISALY DLPRQCTTCGLRFK Q+EH SHMDWHVTKNRMSKNRK KPSR WFV  +M
Sbjct: 258 HESAISALYGDLPRQCTTCGLRFKSQDEHRSHMDWHVTKNRMSKNRKQKPSRMWFVSETM 317

Query: 540 WLSGAEALGTDAVPGFLPTESVVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEEW 599
           WLSGAEALG ++   FL TE+  EKK+DE++AVP DE+QN CALC EPF++FYSDETE+W
Sbjct: 318 WLSGAEALGAESALDFLLTETTEEKKEDEKLAVPPDEDQNTCALCREPFEEFYSDETEDW 377

Query: 600 MYKGAVYMNAPNGSTAGMERSQLGPIVHAKCRSESSVAPPEDFRCDDG 647
           MY+GAVY+N PNG T GM  SQL PI+HAKCRSES+  P E F  D+G
Sbjct: 378 MYRGAVYLNMPNGITTGMAMSQLCPIIHAKCRSEST--PSEVFVIDEG 423


>IMGA|Medtr7g126610.1 Regulation of nuclear pre-mRNA protein; Zinc
            finger, C2H2-type; ENTH/VHS chr07_pseudomolecule_IMGAG_V3
            29451889-29458152 E EGN_Mt090430 20090702
          Length = 1026

 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 109/189 (57%), Gaps = 14/189 (7%)

Query: 455  ISLTKQTPGQDSVGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDW 514
            +S +  T  ++ +G +F  D+I+  H   I  L  +LP  C  CG+R K QE+ + H++W
Sbjct: 836  LSQSTSTEIRNLIGFDFKPDVIREMHPHVIEELLDELPHHCGDCGIRLKQQEQFNRHLEW 895

Query: 515  HVTKNRMSKNRKHKPSRKWFVDTSMWL-SGAEALGTDAVPGFLPTESVVEKKDDE----- 568
            H TK R  +N     SR+W+V +  W+ S AE L          T+SV E  D++     
Sbjct: 896  HATKER-EQNGLTVASRRWYVTSDDWIASKAECLSESEF-----TDSVDEYDDNKTDGSQ 949

Query: 569  -EMAVPADEEQNACALCGEPFDDFYSDETEEWMYKGAVYMNAPNGSTAGMERSQLGPIVH 627
             +  V ADE Q  C LCGE F+D Y  E +EWM+KGAVY+N P+ S + ME   +GPI+H
Sbjct: 950  LDTMVVADENQCLCVLCGELFEDVYCQERDEWMFKGAVYLNNPD-SDSEMESRNVGPIIH 1008

Query: 628  AKCRSESSV 636
            A+C S++S+
Sbjct: 1009 ARCLSDNSI 1017