Jatropha Genome Database

JcCA0019701.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019701.60 + phase: 0 /pseudo
         (93 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g110780.1 Galactose oxidase, central chr01_pseudomole...   160   2e-40
IMGA|Medtr1g111130.1 Galactose oxidase, central chr01_pseudomole...   160   2e-40
IMGA|Medtr2g104850.1 DNA topoisomerase II; Serine/threonine-spec...    91   1e-19
IMGA|Medtr4g067050.1 DNA topoisomerase II chr04_pseudomolecule_I...    66   4e-12

>IMGA|Medtr1g110780.1 Galactose oxidase, central
          chr01_pseudomolecule_IMGAG_V3 23426878-23424656 E
          EGN_Mt090430 20090702
          Length = 204

 Score =  160 bits (404), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 85/88 (96%), Gaps = 1/88 (1%)

Query: 1  MGSKPWLHPAPTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSHGPRLILFGGATAIEGG 60
          MGSKPWL+PAPTY+P+E++WDTDEDAPGPRCGHTLTAVAAT SHGPRLILFGGATAIE G
Sbjct: 1  MGSKPWLYPAPTYKPIESFWDTDEDAPGPRCGHTLTAVAATKSHGPRLILFGGATAIE-G 59

Query: 61 GSSSAPGIRLAGVTNSVHSYDVLTRKWT 88
          GS+SAPGIRLAGVTNSVH+YDV ++KWT
Sbjct: 60 GSTSAPGIRLAGVTNSVHAYDVDSKKWT 87


>IMGA|Medtr1g111130.1 Galactose oxidase, central
          chr01_pseudomolecule_IMGAG_V3 23577588-23576311 E
          EGN_Mt090430 20090702
          Length = 174

 Score =  160 bits (404), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 85/88 (96%), Gaps = 1/88 (1%)

Query: 1  MGSKPWLHPAPTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSHGPRLILFGGATAIEGG 60
          MGSKPWL+PAPTY+P+E++WDTDEDAPGPRCGHTLTAVAAT SHGPRLILFGGATAIE G
Sbjct: 1  MGSKPWLYPAPTYKPIESFWDTDEDAPGPRCGHTLTAVAATKSHGPRLILFGGATAIE-G 59

Query: 61 GSSSAPGIRLAGVTNSVHSYDVLTRKWT 88
          GS+SAPGIRLAGVTNSVH+YDV ++KWT
Sbjct: 60 GSTSAPGIRLAGVTNSVHAYDVDSKKWT 87


>IMGA|Medtr2g104850.1 DNA topoisomerase II;
           Serine/threonine-specific protein phosphatase and
           bis(5-nucleosyl)-tetraphosphatase
           chr02_pseudomolecule_IMGAG_V3 24835580-24845823 E
           EGN_Mt090430 20090702
          Length = 995

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 56/92 (60%), Gaps = 13/92 (14%)

Query: 10  APTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSH------GPRLILFGGATAIEGGGSS 63
           AP Y  +    +  ED PGPRCGHTLTAVAA          GPRLILFGGATA+EG  ++
Sbjct: 64  APNYTVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAA 123

Query: 64  SA-------PGIRLAGVTNSVHSYDVLTRKWT 88
           S         GIRLAG T  VH YDVLT KW+
Sbjct: 124 SGTPSSAGNAGIRLAGATADVHCYDVLTNKWS 155


>IMGA|Medtr4g067050.1 DNA topoisomerase II
           chr04_pseudomolecule_IMGAG_V3 12916872-12917677 E
           EGN_Mt090430 20090702
          Length = 151

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 10  APTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSH------GPRLILFGGATAIEGGGSS 63
           AP+Y  ++   +  ED PGPRCGHTLTAV A          GPRLILFGGATA+EG  ++
Sbjct: 69  APSYTVVDAILEKKEDGPGPRCGHTLTAVPAVGEEGTPGYIGPRLILFGGATALEGNSAA 128

Query: 64  S 64
           S
Sbjct: 129 S 129