Jatropha Genome Database

JcCA0019191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019191.20 - phase: 0 /partial
         (153 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g008220.1 Formyl transferase, N-terminal chr01_pseudo...   214   2e-56
IMGA|Medtr5g012910.1 Formyl transferase, N-terminal chr05_pseudo...    61   2e-10
IMGA|Medtr7g014920.1 Formyl transferase, N-terminal chr07_pseudo...    60   4e-10

>IMGA|Medtr1g008220.1 Formyl transferase, N-terminal
           chr01_pseudomolecule_IMGAG_V3 626070-630937 E
           EGN_Mt090430 20090702
          Length = 305

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/141 (70%), Positives = 115/141 (81%)

Query: 11  VVLIREFEVDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIA 70
           V  +R FEVDF+LLAGYLKLIPAEL++AY + I NIHP+LLPAFGGKG+YGMKVHKAVIA
Sbjct: 163 VDTLRRFEVDFVLLAGYLKLIPAELIRAYQRSIFNIHPSLLPAFGGKGFYGMKVHKAVIA 222

Query: 71  SGARYSGPTIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCE 130
           SGAR+SGPTIHFVDEHYDTG I+AQRVVPVL NDT               YVEV  ALCE
Sbjct: 223 SGARFSGPTIHFVDEHYDTGRILAQRVVPVLTNDTPEELAARVLREEHQLYVEVVEALCE 282

Query: 131 ERIIWREDGVPLIRSRENPNQ 151
           +RI+WR+DGVPLI+ +ENPN+
Sbjct: 283 DRIVWRKDGVPLIQRKENPNE 303


>IMGA|Medtr5g012910.1 Formyl transferase, N-terminal
           chr05_pseudomolecule_IMGAG_V3 3803565-3810509 E
           EGN_Mt090430 20090702
          Length = 349

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 18  EVDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIASGARYSG 77
           + DF++LA Y K+I +  +++Y K I+NIH  LLP+F G   +     K    +G +  G
Sbjct: 228 DTDFLVLARYTKIISSTFLRSYGKDIINIHHCLLPSFRGANPF-----KQAFDAGVKIIG 282

Query: 78  PTIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCEERII 134
            T HFV E  D G II Q V  V   D                      + CE R++
Sbjct: 283 ATSHFVTEGRDAGPIIEQMVERVSHKDDLQRFVQKSENIEKQCLSMAIRSYCELRVL 339


>IMGA|Medtr7g014920.1 Formyl transferase, N-terminal
           chr07_pseudomolecule_IMGAG_V3 3641123-3636544 F
           EGN_Mt090430 20090702
          Length = 324

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 18  EVDFILLAGYLKLIPAELVQAYPKRILNIHPALLPAFGGKGYYGMKVHKAVIASGARYSG 77
             DF++LA Y++++    +++Y   I+NIH  LLP+F G G+      K    +G +  G
Sbjct: 203 NTDFLVLARYMQILSGNFIRSYGNDIINIHHGLLPSFKG-GHPS----KQAFEAGVKLIG 257

Query: 78  PTIHFVDEHYDTGLIIAQRVVPVLANDTXXXXXXXXXXXXXXXYVEVTAALCEERII 134
            T HFV E  D+G II Q V  V   D                  +   + CE R++
Sbjct: 258 ATSHFVSEELDSGPIIEQMVERVSHRDDLQSFVQKSENLEKQCLSKAIRSYCELRVL 314