Jatropha Genome Database

JcCA0018411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0018411.10 - phase: 0 /partial
         (302 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g093730.1 Terpenoid synthase chr08_pseudomolecule_IMG...   129   1e-30
IMGA|Medtr5g019360.1 Polyprenyl synthetase chr05_pseudomolecule_...   129   2e-30
IMGA|AC146550_1.1 Polyprenyl synthetase AC146550.40 4-1850 E EGN...    67   8e-12

>IMGA|Medtr8g093730.1 Terpenoid synthase
           chr08_pseudomolecule_IMGAG_V3 20719069-20720655 E
           EGN_Mt090430 20090702
          Length = 372

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/250 (35%), Positives = 131/250 (52%), Gaps = 20/250 (8%)

Query: 19  AGGKRMRPALVFLVSRATAEIAGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDESDMR 76
           AGGKR+RP L      A  E+ G  E        A  +EMIHT SLIHDD+  +D  D+R
Sbjct: 118 AGGKRVRPVLCL----AACELVGGTEPMAMPAACA--VEMIHTMSLIHDDLPCMDNDDLR 171

Query: 77  RGKETVHQLYGTRVAVLAGD----FMFAQSSWYLANLESIEVIKLISQVIKDFAS----- 127
           RGK T H+++G  VAVLAGD    F F   +    ++    +++ I ++ K   S     
Sbjct: 172 RGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVSTVDVSPARIVRAIGELAKSIGSEGLVA 231

Query: 128 GEIKQASSLFDCDVKLEEYLIKSYYKTASLIAASTKGAAIFSGVDSSISEQMYEYGKNLG 187
           G++   +S    DV LE       +KTA+L+  +    AI  G      E++ ++   +G
Sbjct: 232 GQVVDINSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDEDVEKLRKFATYIG 291

Query: 188 LSFQVVDDVLDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIIESEFCETGS- 246
           L FQVVDD+LD T+S+++LGK AG DL    +T P +  +EK  +  E +  +  E  S 
Sbjct: 292 LLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAEKLNRDAQEQLSG 351

Query: 247 --LDKAVELV 254
             L+K+  L+
Sbjct: 352 FDLNKSAPLI 361


>IMGA|Medtr5g019360.1 Polyprenyl synthetase
           chr05_pseudomolecule_IMGAG_V3 7203707-7202564 E
           EGN_Mt090430 20090702
          Length = 371

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 135/251 (53%), Gaps = 22/251 (8%)

Query: 19  AGGKRMRPALVFLVSRATAEIAGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDESDMR 76
           AGGKR+RP L      A   + G KE  +     A  +EMIHT SLIHDD+  +D  D+R
Sbjct: 117 AGGKRVRPVLCI----AACGLVGGKEEASIPSACA--VEMIHTMSLIHDDLPCMDNDDLR 170

Query: 77  RGKETVHQLYGTRVAVLAGD----FMFAQSSWYLANLESIEVIKLISQVIK-----DFAS 127
           RGK T H++YG  VAVLAGD    F F   +     +    +++ I+++ K        +
Sbjct: 171 RGKPTNHKVYGEDVAVLAGDALLSFAFEHVAVSTIGVPPERIVRAIAELAKAVGKEGLVA 230

Query: 128 GEIKQASSLFDCDVKLEEYLIKSYYKTASLI-AASTKGAAIFSGVDSSISEQMYEYGKNL 186
           G+I    S    +V LE        KTA+L+ AA   GA +  G +  I E++ ++ + +
Sbjct: 231 GQIVDLESEGKSNVGLETLEFIHLRKTAALLEAAVVMGAIVGGGTEDEI-EKLRKFARYI 289

Query: 187 GLSFQVVDDVLDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLRE--IIESEFCET 244
           GL FQVVDD+LD T+S+E+LGK AG DL     T P +  LEK  +  +  I ++  C  
Sbjct: 290 GLLFQVVDDILDVTKSSEELGKTAGKDLTADKATYPKLLGLEKSKEFADKLIKDAHDCLI 349

Query: 245 G-SLDKAVELV 254
           G  ++KA  LV
Sbjct: 350 GFDVEKAAPLV 360


>IMGA|AC146550_1.1 Polyprenyl synthetase AC146550.40 4-1850 E
           EGN_Mt090430 20090702
          Length = 262

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 15/187 (8%)

Query: 20  GGKRMRPALVFLVSRATAEIAGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDESDMRR 77
           G KR  P +      +  E+ G   L       A  +EM+H ASLIHDD+  +D+S  RR
Sbjct: 9   GAKRSPPVMCI----SACELFGGSRLAAFPTACA--LEMVHAASLIHDDLPCMDDSLSRR 62

Query: 78  GKETVHQLYGTRVAVLAGDFMFAQSSWYLAN------LESIEVIKLISQVIKDFASGEIK 131
           G+ + H +YG  +A+LAGD +F     ++ +      +    V+++I+++ +   S  + 
Sbjct: 63  GQPSNHTIYGVDMAILAGDALFPLGFQHIVSHTPSDLVPEPRVLRVIAEIARCVGSTGM- 121

Query: 132 QASSLFDCDVKLEEYLIKSYYKTASLIAASTKGAAIFSGVDSSISEQMYEYGKNLGLSFQ 191
            A    D         +    K   +   S     + +G +    E++  YG+ +G+ + 
Sbjct: 122 AAGQFLDLKGGPNAVGLIQDKKFGEMAECSAVCGGLLAGAEDDEIERLRRYGRAVGVLYA 181

Query: 192 VVDDVLD 198
           +VDD+L+
Sbjct: 182 IVDDILE 188