Jatropha Genome Database

JcCA0013701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0013701.10 + phase: 0 /pseudo/partial
         (274 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g024850.1 AT-rich interaction region; Heat shock prot...   103   8e-23
IMGA|Medtr3g159760.1 AT-rich interaction region; Heat shock prot...   102   2e-22
IMGA|CU179634_8.1 HSP20-like chaperone CU179634.6 36832-30192 H ...    62   3e-10

>IMGA|Medtr5g024850.1 AT-rich interaction region; Heat shock protein
           Hsp20 chr05_pseudomolecule_IMGAG_V3 9945418-9937499 E
           EGN_Mt090430 20090702
          Length = 604

 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 51/64 (79%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEPVR 60
           VTS KLWR VGESF PPKTCTTVSWTFR FYEKALL+YE+H ++ GEL  P  S  EPV 
Sbjct: 359 VTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPEPVN 418

Query: 61  VENQ 64
           VENQ
Sbjct: 419 VENQ 422


>IMGA|Medtr3g159760.1 AT-rich interaction region; Heat shock protein
           Hsp20 chr03_pseudomolecule_IMGAG_V3 41910304-41916235 E
           EGN_Mt090430 20090702
          Length = 379

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 54/69 (78%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEPVR 60
           VT+ KLWR VGESF+PPKTCTTVSWTFR FYEKALLEYEKHK   GEL  P GSL +P  
Sbjct: 118 VTASKLWRSVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSLHQPSS 177

Query: 61  VENQLHCRL 69
           VE +L+  L
Sbjct: 178 VEKELYTYL 186


>IMGA|CU179634_8.1 HSP20-like chaperone CU179634.6 36832-30192 H
          EGN_Mt090430 20090702
          Length = 342

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 1/46 (2%)

Query: 19 TCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEPVRVENQ 64
          TCTTVSWTFR FYEKALLEYE+HK++ G+L  P  +L E   V+N+
Sbjct: 40 TCTTVSWTFRIFYEKALLEYERHKMQSGKLQLPIAALPE-AGVDNE 84