Jatropha Genome Database

JcCA0012252.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012252.10 + phase: 2 /partial
         (270 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074500.1 GCN5-related N-acetyltransferase; Bromodoma...   432   e-121
IMGA|Medtr2g021880.1 Bromodomain chr02_pseudomolecule_IMGAG_V3 5...    57   1e-08
IMGA|Medtr5g100440.1 Bromodomain chr05_pseudomolecule_IMGAG_V3 4...    49   3e-06
IMGA|Medtr8g084150.1 Bromodomain chr08_pseudomolecule_IMGAG_V3 1...    49   3e-06
IMGA|Medtr4g109460.1 Bromodomain; Protein of unknown function GL...    49   4e-06

>IMGA|Medtr8g074500.1 GCN5-related N-acetyltransferase; Bromodomain
           chr08_pseudomolecule_IMGAG_V3 14821763-14823106 E
           EGN_Mt090430 20090702
          Length = 447

 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/287 (73%), Positives = 239/287 (83%), Gaps = 19/287 (6%)

Query: 1   QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 60
           Q+F EIAFCAI+ D QVKGYGTRLMNHLKQ+ARDVDGLTHFLTYADNNA+GYFIKQGFTK
Sbjct: 163 QRFAEIAFCAISDDRQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAIGYFIKQGFTK 222

Query: 61  EIYLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCH-IV 119
           EI+L+KDRW+GYIKDYDGG LMECK+DPK+PYTDL+TMIRRQRQA+ EKIRELSNCH IV
Sbjct: 223 EIHLEKDRWEGYIKDYDGGTLMECKLDPKIPYTDLTTMIRRQRQALFEKIRELSNCHNIV 282

Query: 120 YPGIDFQKK-EVG-IPKKIIKVEDIPGLREAGWTPDQWGYSRFNAFNTSTDSATNQKHWT 177
           Y GIDFQK+ E G IP +I  V+DIPGL+EA WTPD +G+SRF A + STD ATN KH T
Sbjct: 283 YAGIDFQKRSEDGVIPNRI--VDDIPGLKEAKWTPDMYGHSRFRALDGSTDHATNLKHLT 340

Query: 178 AFMRSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMF 237
            FMRS+LK MHDH DAWPFKEPVDA  VP YY+IIK+PMDLKTMS+R+ESEQYYVTF+MF
Sbjct: 341 EFMRSILKEMHDHPDAWPFKEPVDALSVPGYYEIIKNPMDLKTMSERLESEQYYVTFEMF 400

Query: 238 VADVKRMFANART--------------LEAHFESKVQSGFQSAAKIQ 270
           +AD +RMF NART              LEAHF+SKV +  QS  KIQ
Sbjct: 401 LADARRMFENARTYNPPKTIYYKCATRLEAHFQSKVTTLLQSGFKIQ 447


>IMGA|Medtr2g021880.1 Bromodomain chr02_pseudomolecule_IMGAG_V3
           5713810-5710451 E EGN_Mt090430 20090702
          Length = 520

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 182 SLLKSMHDHADAWPFKEPVD--ARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
           ++LK +  H  +W FK PVD  A ++PDY+ +I  PMDL T+  +++   YY + + F A
Sbjct: 85  TILKCLISHPYSWVFKTPVDPVALNIPDYFTVISHPMDLGTIKFKLDKNIYY-SKEEFAA 143

Query: 240 DVKRMFANART 250
           DV+  F+NA T
Sbjct: 144 DVRLTFSNAMT 154


>IMGA|Medtr5g100440.1 Bromodomain chr05_pseudomolecule_IMGAG_V3
           40172786-40166521 E EGN_Mt090430 20090702
          Length = 959

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 196 FKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
           + EPVD  ++PDY+D+I +PMD  T+ K++ +   Y T + F +DV  + +NA
Sbjct: 219 YAEPVDPEELPDYHDVIDNPMDFATVRKKLANGS-YTTLEQFESDVFLICSNA 270


>IMGA|Medtr8g084150.1 Bromodomain chr08_pseudomolecule_IMGAG_V3
           17305797-17296862 E EGN_Mt090430 20090702
          Length = 384

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 161 NAFNTSTDSATNQKHWTAFMRSLLK--SMHDHADAWPFKEPVDARDVP--DYYDIIKDPM 216
           +A  T T +    +       ++L+  S+  H  AWPF EPVD   +   DYY+II  PM
Sbjct: 78  DALRTETAAGKRMQELMRQFSTILRQASITQHKWAWPFLEPVDVEGLGLHDYYEIIDKPM 137

Query: 217 DLKTMSKRVESE--QYYVTFDMFVADVKRMFANA 248
           D  T+  ++E++    Y       ADV+ +F NA
Sbjct: 138 DFGTIKNKMEAKDGTGYKNVREIYADVRLIFKNA 171


>IMGA|Medtr4g109460.1 Bromodomain; Protein of unknown function GLTT
           chr04_pseudomolecule_IMGAG_V3 24516812-24519786 E
           EGN_Mt090430 20090702
          Length = 864

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 182 SLLKSMHDHADAWPFKEPVDARDVP--DYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
           SLL+ +  H  AW F  PVD   +   DY+ II +PMDL T+  R+ ++ +Y +   F  
Sbjct: 661 SLLEKLMKHQYAWVFNTPVDVDGLGLHDYFTIITNPMDLGTVKTRL-NKNWYKSPKEFAE 719

Query: 240 DVKRMFANART 250
           DV+  F NA T
Sbjct: 720 DVRLTFHNAMT 730