Jatropha Genome Database

JcCA0012121.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012121.20 - phase: 0 /partial
         (177 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g016960.1 Nicotinate phosphoribosyltransferase relate...   317   2e-87

>IMGA|Medtr5g016960.1 Nicotinate phosphoribosyltransferase related
           chr05_pseudomolecule_IMGAG_V3 6044602-6051115 E
           EGN_Mt090430 20090702
          Length = 556

 Score =  317 bits (811), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/177 (87%), Positives = 160/177 (90%)

Query: 1   GHEVDAFGVGTNLVTCFAQAALGCVFKLVEINNQPRIKLSEDVSKVSIPCKKRSYRLYGK 60
           GHEVDA+G+GT LVTC+AQAALG VFKLVEI+N PRIKLSEDVSKVSIPCKKR YRLYGK
Sbjct: 380 GHEVDAYGIGTYLVTCYAQAALGVVFKLVEIDNHPRIKLSEDVSKVSIPCKKRIYRLYGK 439

Query: 61  EGYPLVDIMTGENEPSPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSLGKAREE 120
           E YPLVDIMT ENEP PKVG+RILCRHPF ESKRAYVVPQ VEELLKCY  GS GK  E 
Sbjct: 440 ETYPLVDIMTRENEPPPKVGQRILCRHPFQESKRAYVVPQHVEELLKCYCDGSSGKKSET 499

Query: 121 LPPLKDIRDRCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 177
           LPPLKDIR+RCIKQLEQMR DHMRRLNPTPYKVSVSAKLYDFIH LWLNEAPVGELQ
Sbjct: 500 LPPLKDIRERCIKQLEQMRCDHMRRLNPTPYKVSVSAKLYDFIHHLWLNEAPVGELQ 556