Jatropha Genome Database

JcCA0012121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012121.10 + phase: 0 /pseudo/partial
         (736 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g017000.1 DNA-directed DNA polymerase B chr05_pseudom...   865   0.0  
IMGA|Medtr3g143080.1 DNA-directed DNA polymerase B chr03_pseudom...   128   1e-29
IMGA|Medtr5g016990.1 DNA-directed DNA polymerase B chr05_pseudom...   122   5e-28
IMGA|Medtr7g139140.1 DNA-directed DNA polymerase B chr07_pseudom...    91   3e-18
IMGA|Medtr5g016980.1 hypothetical protein chr05_pseudomolecule_I...    80   4e-15

>IMGA|Medtr5g017000.1 DNA-directed DNA polymerase B
            chr05_pseudomolecule_IMGAG_V3 6066040-6054333 E
            EGN_Mt090430 20090702
          Length = 1410

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/586 (72%), Positives = 469/586 (80%), Gaps = 5/586 (0%)

Query: 28   SFQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVKETKMTKRRINHGGEERNAEELXXXXX 87
            + QGARAQRVEYLLLH FH KKYIVPDK S+Y KETK+TKRR+ HG ++ N ++      
Sbjct: 814  TLQGARAQRVEYLLLHEFHKKKYIVPDKFSNYAKETKLTKRRVTHGVDDGNFDDADINDA 873

Query: 88   XXXXXXXXXXRXXXXXXPAYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTV 147
                              +YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV
Sbjct: 874  NYHNDASESDHKKNKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 933

Query: 148  EKSTDGLVPRLPSGKKTGVLPELLKNLVERRRMVKSWMKNASGLKIQQLDIQQQALKLTA 207
            E+S+D   PRLPS K TGVLPELLK LV+ RR  K+WMK ASGLK QQLDI+QQALKLTA
Sbjct: 934  ERSSDDSFPRLPSSKTTGVLPELLKKLVKLRREKKTWMKTASGLKRQQLDIEQQALKLTA 993

Query: 208  NSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGL 267
            NSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGL
Sbjct: 994  NSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGL 1053

Query: 268  DDITKAKAIAGKVIQEVNKKYRCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGTPYEVIE 327
            DDI KA +I+ KVIQEVNKKYRCLEIDLDG                  QFKDGTPYEVIE
Sbjct: 1054 DDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIE 1113

Query: 328  RKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEDMRNGQVELEKY 387
            RKGLD+VRRDWSLL+K+LGDFCL QILSGGSCEDVVESIHNSLMKVQE+MRNGQV LEKY
Sbjct: 1114 RKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKY 1173

Query: 388  VITKSLTKPPEAYPDAKNQPHVLVALRLKQMGYTTGCSAGDTVPYIICSEQEASSGSMTG 447
            VITK+LTKPPEAYPDAKNQPHVLVA RLKQ GYT+GCS GDT+PY+IC EQ  SSGS TG
Sbjct: 1174 VITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYVICCEQGGSSGSATG 1233

Query: 448  IAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKF 507
            IA RARHPDELK++ G W+IDIDYYLSQQIHPV+SRLCASIQGTSPERLADCLGLD+SKF
Sbjct: 1234 IALRARHPDELKQEQGTWLIDIDYYLSQQIHPVISRLCASIQGTSPERLADCLGLDTSKF 1293

Query: 508  KNKXXXXXXXXXXXXLLFAVNDEERYRSCEPLILSCPSCSNTFECPAIFSSIGLIIGEKP 567
            ++K            LLFA +DEERYR CE L+LSCPSCS+ F+CP +F SI ++  EKP
Sbjct: 1294 QHK-SSEASDDPTSSLLFAGDDEERYRGCESLVLSCPSCSSVFDCPPVFKSICMLGNEKP 1352

Query: 568  IKPRVKESMSNFWRTMRCPRCPEEGDMGIISSAIIANQVKRQVEGF 613
                  ES  NFWR + CP+C E G  G IS+A+IANQ+    EGF
Sbjct: 1353 TSSGTDESDYNFWRKLCCPKCFENG-AGRISAAMIANQL---YEGF 1394


>IMGA|Medtr3g143080.1 DNA-directed DNA polymerase B
           chr03_pseudomolecule_IMGAG_V3 36816794-36819651 E
           EGN_Mt090430 20090702
          Length = 337

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 168/336 (50%), Gaps = 31/336 (9%)

Query: 106 AYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTV---EKSTDGLVP-----R 157
           ++    VLE + G Y+K +  LDF SLYPSI+  YN+C+ T+   E +    +P     +
Sbjct: 6   SFGESYVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARMLNIPLESMNK 65

Query: 158 LPSGK-------KTGVLPELLKNLVERRRMVKSWMKNASG-LKIQQLDIQQQALKLTANS 209
            PSG+       + G+LPE+L+ L+  R+  K+ +K A   L+   LD +Q ALK++ANS
Sbjct: 66  TPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANS 125

Query: 210 MYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 261
           +YG  G S  +     ++  +T  GR++++ T  LV+           N EVIYGDTDS+
Sbjct: 126 VYGFTGASIGQLPCLEISSSVTSYGRQMIEHTKKLVEEKFTRLNGYDNNAEVIYGDTDSV 185

Query: 262 MIYSGLDDITKAKAIAGKVIQEVNKKYRCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGT 321
           M+  G+  +  A  +  +  + ++  +    I L+                    +    
Sbjct: 186 MVQFGVSTVKDAMDLGKEAAEHISGTF-TKPIKLEFEKVYCPYLLISKKRYAGLFWTKED 244

Query: 322 PYEVIERKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEDMRNGQ 381
            ++ ++ KG++ VRRD  LL K L + CL +IL   +    V+ + N++     D+   +
Sbjct: 245 SHDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIEKNIPAAVQHVKNAI----SDLLMNR 300

Query: 382 VELEKYVITKSLTKPPEAYPDAKNQPHVLVALRLKQ 417
           ++L   VITK LTK  + Y       HV +A R+++
Sbjct: 301 MDLSLLVITKGLTKTGDDYE--VKTAHVELAERMRK 334


>IMGA|Medtr5g016990.1 DNA-directed DNA polymerase B
           chr05_pseudomolecule_IMGAG_V3 6054326-6053728 E
           EGN_Mt090430 20090702
          Length = 76

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 66/74 (89%)

Query: 616 VYYKGLMMCDDETCKYTTRSLNLRLVGDAEKGTVCANYPRCNGRLVRKYKEADLYKQLSY 675
           +YY+GL+MCDDETCK+TTRS++ RLVGD+E+GTVC NYPRCNG L RKY EADLYKQLSY
Sbjct: 1   MYYRGLLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSY 60

Query: 676 FCYLLDTVYCIEKM 689
           FC++ DTV  IEK+
Sbjct: 61  FCHVFDTVCYIEKV 74


>IMGA|Medtr7g139140.1 DNA-directed DNA polymerase B
           chr07_pseudomolecule_IMGAG_V3 33209886-33202421 H
           EGN_Mt090430 20090702
          Length = 1012

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 173/443 (39%), Gaps = 96/443 (21%)

Query: 111 LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT-----VEKSTDGL-----VPR--- 157
           LV+EP+ G Y   V++LDF SLYPS+I  YN+CF T     V   T+ L     VP    
Sbjct: 450 LVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVPSKTNTLGVSPFVPEQHI 509

Query: 158 -----------------LPSGKKTGVLPELLKNLVERRRMVKSWMKNAS----------- 189
                            +PS  + GVLP LL+ ++  R MVK  MK  S           
Sbjct: 510 LQDLKDQILLTPNGVMFVPSKIRRGVLPRLLEEILSTRIMVKQAMKKLSPSEQVLQRVLL 569

Query: 190 -------GLKIQQLDIQQQALKLTANSMYG--CLGFSNSRFYAKPLAELITLQGREILQS 240
                         + +Q ALKL +N  YG    GFS  R     LA+ I   GR  L+ 
Sbjct: 570 LFMDSIASAMFSIFNARQLALKLISNVTYGYTAAGFSG-RMPCAELADSIVQCGRCTLEK 628

Query: 241 TVDLV--QNNLNLEVIYGDTDSIMIYSGLDDITKAKAIAGKVIQEVNKKYRCLEIDLDGX 298
            +  V      N +VIYGDTDS+ +        +A  I  ++   +        + L   
Sbjct: 629 AISFVNLHEKWNAKVIYGDTDSMFVLLKGRTAKEAFQIGSEIASAITAMNPS-PVTLKME 687

Query: 299 XXXXXXXXXXXXXXXXXQFKDGTPYE-VIERKGLDMVRRDWSLLSKELGDFCLAQILSGG 357
                             +++    E V + KG++ VRRD                    
Sbjct: 688 KVYHPCFLITKKRYVGYSYENPNQIEPVFDAKGIETVRRD-------------------- 727

Query: 358 SCEDVVESI---------HNSLMKVQEDMR-------NGQVELEKYVITKSLTKPPEAYP 401
           +CE V + +         H SL++V+  ++       +G+V L+ ++  K +     +  
Sbjct: 728 TCEAVAKIMEQSLRLFFEHQSLLEVKTYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSAR 787

Query: 402 DAKNQPHVLVALRLKQMGYTTGCSAGDTVPYIICSEQEASSGSMTGIAQRARHPDELKKD 461
            +   P  +VA +  ++         + +PY++   +  +      +      P E+   
Sbjct: 788 ISSLPPAAIVATKAMRVDRRAEPRYAERIPYVVIHGEPGAR-----LVDMVVDPLEVLAI 842

Query: 462 DGKWMIDIDYYLSQQIHPVVSRL 484
           D  + I+  YY+++QI P + R+
Sbjct: 843 DSPFRINDLYYINKQIIPALQRV 865


>IMGA|Medtr5g016980.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 6053726-6053277 E
           EGN_Mt090430 20090702
          Length = 54

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 46/54 (85%)

Query: 683 VYCIEKMDANTRIPLEKELSKIRPIVDLALSTVKKIRDRCAYGWVQLNDLAVTV 736
           ++ + +M+A +RIP+EKEL KIRPIVDLA ST++KIRDRCA+GWV+L DL V +
Sbjct: 1   MFLLLQMEAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVAI 54