Jatropha Genome Database
- JcCA0012011.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0012011.20 + phase: 0 /TE/partial
(1424 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 144 4e-34
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 97 5e-20
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 96 1e-19
IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG... 93 1e-18
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 92 2e-18
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 91 3e-18
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 90 9e-18
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 90 9e-18
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 90 9e-18
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 88 3e-17
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 84 7e-16
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 82 2e-15
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 79 2e-14
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 77 6e-14
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 76 1e-13
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 73 1e-12
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 72 2e-12
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 70 7e-12
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 68 3e-11
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 65 2e-10
IMGA|AC146568_11.1 integrase, related AC146568.11 50809-50552 H ... 64 7e-10
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 62 2e-09
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 57 7e-08
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 55 2e-07
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 51 4e-06
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 50 9e-06
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 179/404 (44%), Gaps = 33/404 (8%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F I + +RSD+ EF N+F GI ++ S TPQQNG VE K++
Sbjct: 589 FINLIHTQYHITPKVVRSDNGPEF---LLNSFYASKGIVHHKSCVETPQQNGRVERKHQH 645
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLP ++ + A+ A +I+NR + K+PY+L G P++ F +F
Sbjct: 646 ILNVGRALLFQSKLPSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQTFKVF 705
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE---- 956
G C+ ++H K A++ + +FLGY+ K Y + + T + S HV F E
Sbjct: 706 GSLCYS-TTLQSHRTKLSARARKTVFLGYAVGYKGYVLLDIHTREIHISRHVQFHEHILP 764
Query: 957 ------SDSTSRTLENDDVVDXXXXXXXXXXXXXXXXXXXXXVDNQAEPEDEHEDXNTTE 1010
+ +T+ + D VD +D H +
Sbjct: 765 YPTNPSTITTTWDYFSSDSCSASNPLPKSSTISPIIPPPFIDVDTPPS-DDNHSVSPIPQ 823
Query: 1011 SQMPETENGDSQLPKAWRFHKYHPQE---DIMDNPSERMMTRAQYKRY----FGNVAFA- 1062
+ + +Q P H Q+ + D+ S + Y Y + AFA
Sbjct: 824 PPVIRKSSRITQPPT-------HLQDYVCSVSDDTSFVQYPISHYLSYNNLSSSHCAFAL 876
Query: 1063 ---SQIEPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLD 1119
S EP +A + AMQ EL+ E WKL+ P N I +W+++ K
Sbjct: 877 SLDSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHH 936
Query: 1120 EQGNVVRNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRMLCAF 1163
G++ R K RLVA+GYNQ EG+ + +T++PVA+L +R + A
Sbjct: 937 ADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIAL 980
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 795 TIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRTLQEMVRTMLSDSKL 854
TIR D+ EF + F A GI ++ S TPQQNG VE K++ + +VR +L SKL
Sbjct: 460 TIRIDNGPEFMLKDFYA---SHGIIHHKSCVETPQQNGRVERKHQHILNVVRALLFQSKL 516
Query: 855 PKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIFGCKCFILDNKKNHL 914
P F + AV A +++NR ++PY + + P++ F +FGC C+ +NH
Sbjct: 517 PPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCLCYA-STLQNHR 575
Query: 915 AKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDES 957
K +++ + IFLGY S K Y +F+ + + S HV F E+
Sbjct: 576 TKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHET 618
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 1066 EPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVV 1125
EP +A + AMQ EL E W ++ P IG +W+++ K + G++
Sbjct: 738 EPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIE 797
Query: 1126 RNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRMLCAFECFH 1167
R K RLVA+GY Q EG+ + ET++PVA+L +R++ A H
Sbjct: 798 RYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIH 839
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 4/191 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F I+N+ IR+D+ EF +F A GI + S TPQQNG VE K++
Sbjct: 91 FIVMIENQFHVTPKIIRTDNGSEFLLHEFYA---SKGILHQSSCVETPQQNGRVERKHQH 147
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLP +F + A A +++NR +PY L P+I F +F
Sbjct: 148 ILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKVF 207
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDESDST 960
GC C+ + ++H+ K + ++ + +FLGY K Y +++ T + S HVVF E
Sbjct: 208 GCLCYA-SSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLP 266
Query: 961 SRTLENDDVVD 971
+++ + +D
Sbjct: 267 YKSISSSQSLD 277
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%)
Query: 1066 EPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVV 1125
EPK +A E AMQ EL E WK+I P N IG +W+++ K G +
Sbjct: 384 EPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTIE 443
Query: 1126 RNKTRLVAQGYNQ 1138
R K RLVA+GYNQ
Sbjct: 444 RYKARLVAKGYNQ 456
>IMGA|Medtr8g074430.1 integrase, related
chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
EGN_Mt090430 20090702
Length = 272
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%)
Query: 49 KTEEEYTDADWNDISINAKAINILRCALDATEYNKVSGCRSATEVXKKLRVTYEGTYRVK 108
K++ E+TD D + +++A +++ CAL E++ V C +A E+ L+ +EGT VK
Sbjct: 66 KSKTEWTDDDKKKVHPDSRAKHLISCALCNDEFSNVMYCETAREMWNTLQNIHEGTGEVK 125
Query: 109 ESRINILWREYKMFSMKEGETITELNSRFTNIVNPLRTLGKEISEDELVKKILRILPKKW 168
+RI L EY+ F MK GE I ++ RF ++VN L +LGK+I ++LV K+LR L KKW
Sbjct: 126 MARIGYLTGEYERFCMKPGENIHDMQMRFYDVVNHLASLGKKIPNEDLVSKVLRCLSKKW 185
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 4/176 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F I+N+ IR+D+ EF F A GI + S TPQQNG VE K++
Sbjct: 617 FIALIENQFHITPKIIRTDNGSEFLLHDFYA---SKGILHQRSCVETPQQNGRVERKHQH 673
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLP +F + A A +++NR ++PY+L P++ F +F
Sbjct: 674 ILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVF 733
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
GC C+ + ++H K + ++ + +FLGY S K +++ T + S HVVF E
Sbjct: 734 GCLCYA-SSLQSHRTKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISRHVVFHE 788
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%)
Query: 1059 VAFASQIEPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKL 1118
++ + EPK+ +A E AMQ EL E WK+I P N IG +W+++ K
Sbjct: 904 LSLHAHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKH 963
Query: 1119 DEQGNVVRNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRMLCAF 1163
G + R K RLVA+GYNQ EG+ + +T++PVA+ IR++ A
Sbjct: 964 HADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLAL 1008
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 785 IQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRTLQEM 844
I+N+ IR+D+ EF +F A GI + S TPQQNG VE K++ + +
Sbjct: 2 IENQFHVTPKIIRTDNGSEFLLHEFYA---SKGILHQRSCVETPQQNGRVERKHQHILNI 58
Query: 845 VRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIFGCKC 904
R +L SKLP +F + A A +++NR +PY L P+I F +FGC C
Sbjct: 59 GRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDITTFKVFGCLC 118
Query: 905 FILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE------SD 958
+ + ++H K + ++ + +FLGY K Y +++ T + S HVVF E S
Sbjct: 119 YA-SSLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPYKSI 177
Query: 959 STSRTLE 965
S+S++L+
Sbjct: 178 SSSQSLD 184
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%)
Query: 1066 EPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVV 1125
EPK +A E AMQ EL E WK+I P N IG +W+++ K + +
Sbjct: 291 EPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTIE 350
Query: 1126 RNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRM 1159
R K RLVA+GYNQ EG+ + +T++PVA+ IR+
Sbjct: 351 RYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRL 384
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F I+N+ + T+R+D+ EF F + GI + S TPQQNG VE K++
Sbjct: 570 FILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQTSCVETPQQNGRVERKHQH 626
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLPK F + +V A YI+NR K+PY L G P++ F +F
Sbjct: 627 ILNVARALLFQSKLPKVFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVF 686
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
GC + NH KFD+++ + +FLGY K +++ + S +V + E
Sbjct: 687 GCLSY-ASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYHE 741
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F I+N+ + T+R+D+ EF F + GI + S TPQQNG VE K++
Sbjct: 640 FILNIENQFNCKVKTVRTDNGPEF---LMPDFYSSKGIEHQTSCVETPQQNGRVERKHQH 696
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLPK F + +V A YI+NR K+PY L G P++ F +F
Sbjct: 697 ILNVARALLFQSKLPKIFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVF 756
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
GC + NH KFD+++ + +FLGY K +++ + S +V + E
Sbjct: 757 GCLSYA-STLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYHE 811
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 64/111 (57%)
Query: 1054 RYFGNVAFASQIEPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWV 1113
R F ++ +Q EPK+ +A + AMQ EL E WKL+ P N IG +W+
Sbjct: 880 RSFFVMSLHTQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWI 939
Query: 1114 FRNKLDEQGNVVRNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRMLCAFE 1164
++ K G V R K RLVA+GYNQ EG+ + +T++PVA+L +R++ A
Sbjct: 940 YKVKFHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALS 990
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F I+N IR+D+ EF + + GI + S TPQQNG VE K++
Sbjct: 606 FITMIKNHFHTTPKFIRTDNGPEF---MLSTLYSSHGIIHQKSCVETPQQNGRVERKHQH 662
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLP + A+ A +++NR + ++PY + + P+ F +F
Sbjct: 663 ILNVGRALLYQSKLPPAYWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVF 722
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
GC C+ ++H K ++ + IF+GY S K + +++ + + S HV F E
Sbjct: 723 GCLCYA-STLQSHTTKLKHRARKSIFIGYQSGYKGFTLYDLHSREIFISRHVTFHE 777
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 4/176 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F IQ + T+RSD+ EF ++F GI ++ S TPQQNG VE K++
Sbjct: 597 FINLIQTQYNITPKTVRSDNGPEF---LLHSFYASKGIVHHRSCVETPQQNGRVERKHQH 653
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLP ++ + A+ A +I+NR + K+PY+L P F +F
Sbjct: 654 ILNVGRALLYQSKLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVF 713
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
G C+ +H K A++ + +FLGY+ K Y + + T + S HV F E
Sbjct: 714 GSLCYS-TTLHSHRTKLSARARKSVFLGYTVGFKGYVLLDIHTREIHISRHVQFYE 768
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%)
Query: 1066 EPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVV 1125
EPK +A E AMQ EL E W + P N IG +WVF+ K G++
Sbjct: 866 EPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIE 925
Query: 1126 RNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRMLCAF 1163
R K RLVA+GY Q EG+ + +TF+PVA+L +R++ A
Sbjct: 926 RYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIAL 963
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 19/161 (11%)
Query: 796 IRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRTLQEMVRTMLSDSKLP 855
+RSD+ EF N F + GI + S TPQQNG VE K++ + + R +L SKLP
Sbjct: 615 VRSDNGPEF---LLNDFYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLP 671
Query: 856 KNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIFGCKCFILDNKKNHLA 915
+F + A+ A +++NR ++PY + + P+I F +
Sbjct: 672 PSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHKLPDIQLFK----------------S 715
Query: 916 KFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
K ++ + +FLGY S K Y +F+ T + S HV+F E
Sbjct: 716 KLQPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHE 756
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F I+N+ IR+D+ EF F A GI + S TPQQNG VE K++
Sbjct: 617 FIALIENQFHITPKIIRTDNGSEFLLHDFYA---SKGILHQRSCVETPQQNGRVERKHQH 673
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLP +F + A A +++NR ++PY+L P++ F +F
Sbjct: 674 ILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVF 733
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGY 929
GC C+ + ++H K + ++ + +FLGY
Sbjct: 734 GCLCYA-SSLQSHRTKLETRARKSVFLGY 761
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%)
Query: 1066 EPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVV 1125
EP + E+A D + AM +E N W L + PK+ +G +WV++ K G+V
Sbjct: 335 EPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVE 394
Query: 1126 RNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRMLCA 1162
R K RLV +GY Q GI + ETF+PV ++ +R L
Sbjct: 395 RYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIV 431
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 74/184 (40%), Gaps = 52/184 (28%)
Query: 774 HITCLFIFARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGV 833
H+ FI ++N+ + TIRSD+ EF + + F GI + S P TPQQNGV
Sbjct: 66 HVLKAFILM--VENQFSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTPQQNGV 123
Query: 834 VECKNRTLQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPN 893
VE K++ + E R +L SKLP + +E
Sbjct: 124 VERKHKFILETARALLFQSKLPVKYWSEF------------------------------- 152
Query: 894 IGYFHIFGCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVV 953
H KFD K+ +F+GY +K YKV N T + S V+
Sbjct: 153 -------------------HRTKFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRDVI 193
Query: 954 FDES 957
F E+
Sbjct: 194 FHET 197
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F ++ + I IRSD+ EF F ++ GI + S TPQQNG VE +++
Sbjct: 642 FVSMVERQFERKIKMIRSDNGPEF---MLREFYDKKGIIHQRSCVYTPQQNGRVERRHQH 698
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R ++ SKLPKNF + AV A Y++NR + K+ YE+ P++ +F
Sbjct: 699 ILNISRALMFQSKLPKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVF 758
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSS 931
GC + N KFD K+ + FLG+ S
Sbjct: 759 GCLSYASTLPVNRY-KFDPKARKCAFLGFKS 788
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 1083 MQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVVRNKTRLVAQGYNQEEGI 1142
MQ E+ E WK++ P IG +W+F+ K + G++ R K RLVA+GYNQ EG+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 1143 HFDETFAPVARLVAIRMLCAF 1163
+ +T++PVA+L +R + A
Sbjct: 61 DYFDTYSPVAKLTTVRFIIAL 81
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 796 IRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRTLQEMVRTMLSDSKLP 855
IRSD+ EF +F A GI + S TPQQNG VE K++ + + R +L SKLP
Sbjct: 643 IRSDNGPEFLIPEFYA---SKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSKLP 699
Query: 856 KNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIFGCKCF 905
F + AV A +++N+ +K+PY+L P+I F +FGC CF
Sbjct: 700 NFFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCF 749
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 47/79 (59%)
Query: 827 TPQQNGVVECKNRTLQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYEL 886
TPQ NGV E N+TL E R MLS+ L + F AEAVNT CY++NR S KT YEL
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYEL 64
Query: 887 YKGRKPNIGYFHIFGCKCF 905
+ G+ + +FGC +
Sbjct: 65 WPGKSVDYSNLRVFGCTVY 83
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 70.1 bits (170), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 1083 MQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVVRNKTRLVAQGYNQEEGI 1142
MQ E+ E WKL+ P N IG +W+++ K G++ R K RLV +GYNQ EG
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 1143 HFDETFAPVARLVAIRML 1160
+ +T++PVA+L R++
Sbjct: 61 DYFDTYSPVAKLTTARLV 78
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F + +Q + IRSD+ EF +F LGI + S TPQQNG VE K+
Sbjct: 573 FIKMVQTQFHVTPKCIRSDNGPEF---LILSFYESLGILHQKSCVETPQQNGRVERKHHH 629
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+ + R +L SKLP ++ + A+ A +++NR K TP L +G+ P H F
Sbjct: 630 ILNVGRALLYQSKLPASYWSYALLHAVFLINR-------KPTP--LLEGQSPYYALHHKF 680
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
+D KN + ++ + +FLGY S K + + + + + S HVVF E
Sbjct: 681 P----DIDTFKNQAS---TRARKTVFLGYKSGYKGFILLDIHSREIFVSRHVVFHE 729
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 844 MVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIFGCK 903
MVR+ML + K+P F AVNTA YILNR + K P E++ RKP+I +FG
Sbjct: 1 MVRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSI 60
Query: 904 CF--ILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFN--KKTLAVEESIHVVFDE 956
+ + D+++ K + K+ I +GY N+ AY++ + K +++ + V+ +E
Sbjct: 61 FYKHVPDSRRK---KLEDKTEAMILVGY-HNTGAYRLLDLHSKKISITRDVKVLEEE 113
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 1093 NQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVVRNKTRLVAQGYNQEEGIHFDET 1147
NQ W+LI I KWVF+ KL+ +G +V++K RLVA+ + ++EG + E
Sbjct: 210 NQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGFDYTEV 264
>IMGA|AC146568_11.1 integrase, related AC146568.11 50809-50552 H
EGN_Mt090430 20090702
Length = 85
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 97 LRVTYEGTYRVKESRINILWREYKMFSMKEGETITELNSRFTNIVNPLRTLGKEISEDEL 156
L +EG VK+S IN L ++Y++F M+EG +I+ + RFT+IVN L+ LG +I +
Sbjct: 5 LETLHEGMNNVKQSMINTLVQQYELFRMEEGGSISSVQMRFTHIVNKLQILGNDIPNQDF 64
Query: 157 VKKILRILPKKW 168
KILR + + W
Sbjct: 65 TYKILRCMTRDW 76
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F IQN IR+D+ EF F A GI + S TPQQNG VE K++
Sbjct: 565 FITMIQNHFHTTPKFIRTDNGPEFMLPSFYA---SHGIIHQKSCVETPQQNGRVERKHQH 621
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYF 897
+ + R +L SKLP +F + A++ A +++NR ++PY L + P+I F
Sbjct: 622 ILNVGRALLYQSKLPPSFWSYAIHHAVFLINRVPTPLLHNQSPYFLLHHKLPDIALF 678
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 40/172 (23%)
Query: 785 IQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRTLQEM 844
++N+ G + ++ D+ EF +FN FC GI + TPQQN V + N+TL E
Sbjct: 18 LENQFGKKVKRLQIDNGLEFCWSEFNEFCKTEGISRHHMVRNTPQQNSVAKRMNQTLLER 77
Query: 845 VRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIFGCKC 904
R MLS++ L + F E FGC
Sbjct: 78 ARCMLSNAGLTRTFWGETG------------------------------------FGCTV 101
Query: 905 FILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDE 956
+ N+ K ++++ + +F+GY K Y++++ V S +VVFDE
Sbjct: 102 YYRVNE----GKLESRAKKRVFVGYGDGVKEYRIWSPSENRVILSRNVVFDE 149
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1058 NVAFASQIEPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFR 1115
+A +S IEP + + AQ+D LAM EL+ E W + P N S IG+KW+FR
Sbjct: 144 TLAISSDIEPSSFKQAQSDPRWQLAMSPELSALEATGTWIFVDPPPNISPIGSKWIFR 201
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 39/177 (22%)
Query: 781 FARKIQNEKGYNISTIRSDHRGEFENQKFNAFCNELGIFYNFSAPRTPQQNGVVECKNRT 840
F IQN+ IRSD+ F +AF GI + S TPQ N
Sbjct: 550 FIYLIQNKHKVTPKIIRSDNGHVF---LLSAFYASQGIIHQRSCVETPQHN--------- 597
Query: 841 LQEMVRTMLSDSKLPKNFXAEAVNTACYILNRALVRSKLKKTPYELYKGRKPNIGYFHIF 900
+++NR K+PY++ P+I F +F
Sbjct: 598 --------------------------VFLINRVPTLVLENKSPYQVLYKTLPDINSFKVF 631
Query: 901 GCKCFILDNKKNHLAKFDAKSYEGIFLGYSSNSKAYKVFNKKTLAVEESIHVVFDES 957
GC C+ ++H K +++ + +FLGY S K +++ T + S +V F ES
Sbjct: 632 GCLCYA-STLQSHRTKLQSRARKSVFLGYKSGYKGSFLYDLNTKEIFMSRNVTFHES 687
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 1083 MQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKLDEQGNVVRNKTRLVAQGYNQEEGI 1142
M +L W L + K+ VIG KW +R K G + R KT L+ + Y ++EG+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 1143 HFDETFAPVARLVAIRML 1160
+ +TF+ VA++ + +L
Sbjct: 61 NSLDTFSLVAKITIVCLL 78