Jatropha Genome Database

JcCA0011081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0011081.10 - phase: 0 
         (214 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g029500.1 PAP fibrillin chr05_pseudomolecule_IMGAG_V3...    98   3e-21
IMGA|Medtr2g029130.1 PAP fibrillin chr02_pseudomolecule_IMGAG_V3...    70   8e-13
IMGA|Medtr2g029120.1 PAP fibrillin chr02_pseudomolecule_IMGAG_V3...    67   8e-12
IMGA|Medtr1g126270.1 PAP fibrillin chr01_pseudomolecule_IMGAG_V3...    64   5e-11

>IMGA|Medtr5g029500.1 PAP fibrillin chr05_pseudomolecule_IMGAG_V3
           12292539-12296917 F EGN_Mt090430 20090702
          Length = 355

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)

Query: 99  ITDEWGEKIEPNTESDYPKYADADPPV---RDDEWEE-------EYAAAGNGSTSQSTGV 148
           I+DEWG+K EP  E+     +     V    +DEW E        Y+ AGNG+ + ++  
Sbjct: 61  ISDEWGDKSEPVPEAKPSLSSKVSSSVPSKNEDEWGEGAKNDAGSYSDAGNGTPAFASEA 120

Query: 149 VVEK--DDNVGDLKRILVDTVYGTNFGFQASPEIRAEVLELVNQLEAMNPTQTPVDAAEV 206
            VE+  +D +  LKR LVDTVYGT  GF+A  E+RAEV E V QLEA NPT  PV+  E+
Sbjct: 121 PVEEGGNDELEGLKRALVDTVYGTELGFRAGSEVRAEVSEFVAQLEAANPTPAPVEEPEL 180

Query: 207 LDGNWVLL 214
           L+GNWVLL
Sbjct: 181 LNGNWVLL 188


>IMGA|Medtr2g029130.1 PAP fibrillin chr02_pseudomolecule_IMGAG_V3
           7677990-7675693 E EGN_Mt090430 20090702
          Length = 317

 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 127 DDEWEEEYAAAGNGSTSQSTGVVVEKDDNVGDLKRILVDTVYGTNFGFQASPEIRAEVLE 186
           DDEW  E +A    +  Q+T  V   D     LK+ LV + YGT+ G +A+ E RAE++E
Sbjct: 63  DDEWGPEPSAGVAVAEVQATEKV--SDGETEKLKKALVGSFYGTDRGLKATSETRAEIVE 120

Query: 187 LVNQLEAMNPTQTPVDAAEVLDGNWVL 213
           L+ QLEA NPT    DA  +L+G W+L
Sbjct: 121 LITQLEAKNPTPASTDALSLLNGKWIL 147


>IMGA|Medtr2g029120.1 PAP fibrillin chr02_pseudomolecule_IMGAG_V3
           7673916-7671853 E EGN_Mt090430 20090702
          Length = 316

 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 127 DDEWEEEYAAAGNGSTSQSTGVVVEKDDNVGDLKRILVDTVYGTNFGFQASPEIRAEVLE 186
           DDEW  E +A        +   V+  +     LK+ LV + YGT  G +A+ E RAE+ E
Sbjct: 66  DDEWGSEPSA------DVAVAEVIVPESETEKLKKDLVGSFYGTARGLKAASETRAEIFE 119

Query: 187 LVNQLEAMNPTQTPVDAAEVLDGNWVL 213
           L++QLEA NPT    DA  +LDG W+L
Sbjct: 120 LISQLEAKNPTPASTDALSLLDGKWIL 146


>IMGA|Medtr1g126270.1 PAP fibrillin chr01_pseudomolecule_IMGAG_V3
           28136890-28135192 E EGN_Mt090430 20090702
          Length = 198

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 127 DDEWEEEYAAAGNGSTSQSTGVVVEKDDNVGDLKRILVDTVYGTNFGFQASPEIRAEVLE 186
           DDEW  E       S   +   V+  D     LK+ LV   YGT+ G +A+ E RAE+ E
Sbjct: 10  DDEWGSE------PSADVAVAEVIVTDIETEKLKKDLVGLFYGTDHGSKAASETRAEIFE 63

Query: 187 LVNQLEAMNPTQTPVDAAEVLDGNWVL 213
           L++QLEA  PT    DA  +LDG W+L
Sbjct: 64  LISQLEAKFPTPASTDALSLLDGKWIL 90