Jatropha Genome Database

JcCA0009632.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009632.10 + phase: 2 /partial
         (132 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g100600.1 Nicotianamine synthase chr01_pseudomolecule...   139   3e-34
IMGA|Medtr2g038330.1 Nicotianamine synthase chr02_pseudomolecule...   126   2e-30

>IMGA|Medtr1g100600.1 Nicotianamine synthase
           chr01_pseudomolecule_IMGAG_V3 20946388-20947585 E
           EGN_Mt090430 20090702
          Length = 341

 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 95/133 (71%), Gaps = 25/133 (18%)

Query: 1   VFLAALVGMDKEEKVRVLDHLAKNMARGAMLLLRSANGARAFLYPVVDPCDLQGFEVLSV 60
           V+LAALVGM  EEK R+++HLAK MA GA+L+LRSA+GARAFLYPVVD  DL+GFEVLSV
Sbjct: 229 VYLAALVGMSVEEKNRIIEHLAKYMAPGALLMLRSAHGARAFLYPVVDTNDLRGFEVLSV 288

Query: 61  FHPTDEVINSVIIARKLDYGYNDHQIKPLHDLQQQGLVSNLILPTKCS--EIEAFNPL-N 117
           FHPTDEVINSV+IAR+           P+           ++LP KC   EI+A  PL N
Sbjct: 289 FHPTDEVINSVVIARRY----------PM-----------VLLPNKCCSDEIQALKPLIN 327

Query: 118 HG-NMVEELTIEE 129
           HG NM+EEL IEE
Sbjct: 328 HGNNMIEELVIEE 340


>IMGA|Medtr2g038330.1 Nicotianamine synthase
           chr02_pseudomolecule_IMGAG_V3 10711186-10710338 H
           EGN_Mt090430 20090702
          Length = 282

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 72/77 (93%), Gaps = 1/77 (1%)

Query: 1   VFLAALVGMDKEEKVRVLDHLAKNMARGAMLLLRSANGARAFLYPVVDP-CDLQGFEVLS 59
           VFLAALVGMDK+EK +V++HLAK MA GA+L+LRSA+GA+AFLY VVDP CDL+GFEVLS
Sbjct: 197 VFLAALVGMDKKEKAKVINHLAKYMAPGAILVLRSAHGAKAFLYHVVDPSCDLKGFEVLS 256

Query: 60  VFHPTDEVINSVIIARK 76
           +FHPTDEVINSVI+ARK
Sbjct: 257 IFHPTDEVINSVIVARK 273