Jatropha Genome Database
- JcCA0009561.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0009561.20 - phase: 0 /TE/partial
(1128 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 321 1e-87
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 302 8e-82
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 300 2e-81
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 298 8e-81
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 287 2e-77
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 245 1e-64
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 213 6e-55
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 173 4e-43
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 169 5e-42
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 159 7e-39
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 159 1e-38
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 154 3e-37
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 146 7e-35
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 130 5e-30
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 122 1e-27
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 120 4e-27
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 107 3e-23
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 105 1e-22
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 97 6e-20
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 91 2e-18
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 89 1e-17
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 77 4e-14
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 76 1e-13
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 71 2e-12
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 70 8e-12
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 67 3e-11
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 67 6e-11
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 60 7e-09
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 58 3e-08
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 57 5e-08
IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule... 55 2e-07
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 55 2e-07
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 55 2e-07
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 55 2e-07
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 51 3e-06
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 50 5e-06
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 50 5e-06
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 321 bits (823), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 217/749 (28%), Positives = 362/749 (48%), Gaps = 101/749 (13%)
Query: 218 VVLWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQKRL----GVIRSS 273
LWH RLGH+S R+ ++ + ++ + D C C +KQK L + +S
Sbjct: 492 AALWHFRLGHLSNQRMIKM--SHLYPSIVHNNRDVCDIC---HFSKQKHLPFSSSLSHAS 546
Query: 274 NVLELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVEN 333
EL+H DI GP I++ +G RYF++ +DD+SR+ ++ L+ KSE K++ +
Sbjct: 547 TNFELLHFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHVKNFILMIRT 606
Query: 334 QLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERR 393
Q K VRSD G E+ F GI+ Q + TP NG ER+
Sbjct: 607 QFHVTPKYVRSDNGPEFL-------------LNDFYSSHGIIHQKSCVETPQQNGRVERK 653
Query: 394 NRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSLKHL 452
++ ++++ R+++ S LP S W A+ A +L+NR+P+ + ++PY + + P ++
Sbjct: 654 HQHILNVGRALLYQSKLPPSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHKLPDIQLF 713
Query: 453 HVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDV 512
++KL + S F+GY +GY ++ ++R F +R F E++
Sbjct: 714 ---------------KSKLQPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHENI 758
Query: 513 ---------------DFGGRNKERNIVFEEEPSKDDSVL-----------IPFVVSDSVQ 546
F E + PS + L + + S +
Sbjct: 759 LPYTFTTSSTTPSWDYFSPSTTETSHSPNNTPSTPSASLPHTQSSSPSVPVSHLPRHSTR 818
Query: 547 TPVAPVTIQDPIQDNAXXXXXXXXXXXXXXXVQMPLRRS-TRERRSAIPDDYIVFLQEHE 605
++P +QD + ++ P+ + + S+ Y++ L H
Sbjct: 819 NKISPSYLQDYVCNSINS-------------TTYPISHYLSHNKLSSHHSSYVLSLHTH- 864
Query: 606 DTVDMIDDDPVSFYHAMQSSDSHK-WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWI 664
++P ++ A + H+ W +AM E ++++ W+ V LP KPIGC+W+
Sbjct: 865 -------NEPKTYAEA----NKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWV 913
Query: 665 FKTKRDSQGNVERYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRTIMALVANLDLELHQ 724
FK KR + G++ERYKARLVAKG+TQ EG+DY +TFSPV+ + R I+AL + LHQ
Sbjct: 914 FKIKRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQ 973
Query: 725 MDVKTAFLNGDIDETIFMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVS 784
+DV AFL+GD+ E ++M P + + VCKL KS+YGLKQASR+WY K +++
Sbjct: 974 LDVNNAFLHGDLQENVYMTLPPG-ISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLK 1032
Query: 785 FGFEANTVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEA 844
+ ++ ++ K +G+ + L++YVDDI+LA + K L F++KDLG+
Sbjct: 1033 HQYTQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQL 1092
Query: 845 SFVLGIQIHRDRSRDILGLSQKSYIDKVLKRFSMQNSRPLDTPIAKGDKFSNQQCPKSEL 904
F LG+++ S+ + L QK Y +L S+P TP K L
Sbjct: 1093 KFFLGLEV--AHSQLGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKD----GAL 1146
Query: 905 EIQEMQKVPYASAVGSLMYVQVCTRPDIS 933
+++ Y +G L+Y+ TRPDI+
Sbjct: 1147 PYEDIPS--YRRLIGRLLYLNT-TRPDIT 1172
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 302 bits (773), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 203/684 (29%), Positives = 316/684 (46%), Gaps = 143/684 (20%)
Query: 272 SSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEV 331
++ + EL+H DI GP+ + +YFI+ +DD+S+ + L+ KS + V K++ V
Sbjct: 16 TTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCKSNAFHVLKAFILMV 75
Query: 332 ENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSE 391
ENQ +K++RSD G E+ S E LF Q GI+ Q + P TP NGV E
Sbjct: 76 ENQFSTTVKTIRSDNGLEF-----TSNET-----TLFFQSKGIIHQKSCPYTPQQNGVVE 125
Query: 392 RRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVAKTPYELWTGRKPSLKH 451
R+++ +++ R+++ S LP W E
Sbjct: 126 RKHKFILETARALLFQSKLPVKYWSEF--------------------------------- 152
Query: 452 LHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFED 511
+ TK D KTI FVGY ++GYK N +++
Sbjct: 153 ---------------HRTKFDPKTIPHVFVGYPYATKGYKVLNLSTQKI----------- 186
Query: 512 VDFGGRNKERNIVFEEEPSKDDSVLIPFVVS-DSVQTPVAP---VTIQD-PI----QDNA 562
+ R+++F E + PF +S D P P V++ D P QD +
Sbjct: 187 ------HVSRDVIFHE-------TIFPFAMSKDPTHFPKFPFHCVSLHDYPTSYDDQDYS 233
Query: 563 XXXXXXXXXXXXXXXVQMP-------------LRRSTRERRSA---------IPDDYI-- 598
P LRRS R ++ +P +
Sbjct: 234 SKETTTSPTHITPENSTSPTHITPENSTSIPQLRRSQRLHKTPTYLTDYVHNVPSSTVSN 293
Query: 599 -------------VFLQEHEDTVDMIDDDPVSFYHAM----------QSSDSHKWIEAMN 635
+F +H + D+ D SF + ++S W +AM
Sbjct: 294 SQPPQPHSLPLNALFTLKHYVSPDVFSFDSQSFIMNISHDCEPNSYEEASMDPAWQKAMT 353
Query: 636 EEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQGNVERYKARLVAKGFTQKEGIDY 695
+E+ ++ DN W L LP+ KK +GC+W++K K + G+VERYKARLV KG+TQ GIDY
Sbjct: 354 QEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVERYKARLVVKGYTQHHGIDY 413
Query: 696 KETFSPVSSKDSFRTIMALVANLDLELHQMDVKTAFLNGDIDETIFMVQPENFVIGDPKH 755
ETFSPV + RT++ A +HQ+DV AFL+GD+ E ++M P K
Sbjct: 414 TETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPGLATPH-KD 472
Query: 756 LVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANTVENCVYHKFSGSRFIFLVLYVDDI 815
LVCKL KS+YGLKQASRQWY K + + + G+E + + +++K G+ +FL +YVDDI
Sbjct: 473 LVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVFLGVYVDDI 532
Query: 816 LLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQI-HRDRSRDILGLSQKSYIDKVLK 874
LL + E K FL F++KDLG + LG+++ ++D D + +SQ+ ++ +LK
Sbjct: 533 LLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKD---DGILVSQRKFVLDLLK 589
Query: 875 RFSMQNSRPLDTPIAKGDKFSNQQ 898
F+ + PL +P+ K + +
Sbjct: 590 EFNCDHMAPLSSPLDPNIKLRSHE 613
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 300 bits (769), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 196/629 (31%), Positives = 311/629 (49%), Gaps = 76/629 (12%)
Query: 340 KSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMD 399
K++R D G E+ K F GI+ + TP NG ER+++ +++
Sbjct: 459 KTIRIDNGPEFMLKD-------------FYASHGIIHHKSCVETPQQNGRVERKHQHILN 505
Query: 400 MVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAV-AKTPYELWTGRKPSLKHLHVWGCP 458
+VR+++ S LP + W A+ A +L+NR+ + + ++PY + + PSL V+GC
Sbjct: 506 VVRALLFQSKLPPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCL 565
Query: 459 AEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDV------ 512
A + + TKL S+ S F+GY +GY ++ TSR F +R +F E +
Sbjct: 566 CYASTLQNHRTKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHETILPYHKN 625
Query: 513 ------DFGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVTIQDPIQDNAXXXX 566
D+ ++ ++ P+ + V IP V+ D + P T
Sbjct: 626 PSSTTADWNYYPSSQSYSHDQSPNVNHQVHIPAVIDD-----ILPST-----------HV 669
Query: 567 XXXXXXXXXXXVQMPLRRSTRERRSAIP-DDYI-------VFLQEHEDTVDMIDDDPVSF 618
+ + RRS R R + + DY+ + H + I + SF
Sbjct: 670 LPPSPPYDSPPIHVSPRRSNRVRTAPLHLQDYVCNSVHSTTYPLSHYINYNNISTNHASF 729
Query: 619 YHAMQ----------SSDSHKWIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTK 668
++Q +S W +AM E +++ WD+V LP KPIGC+WI+K K
Sbjct: 730 ISSLQTTPEPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVK 789
Query: 669 RDSQGNVERYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRTIMALVANLDLELHQMDVK 728
++ G++ERYKARLVAKG+TQ EG+DY ET+SPV+ + R ++AL + + LHQ+DV
Sbjct: 790 HNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVN 849
Query: 729 TAFLNGDIDETIFMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFE 788
AFL+G++ E ++M+ P I P H VCKLKKS+YGLKQASRQWY K V++ +
Sbjct: 850 NAFLHGELQEDVYMILPPGINIAKP-HQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYI 908
Query: 789 ANTVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVL 848
+ ++ ++ K S F L++YVDDI+LA + K L F++KDLG+ + L
Sbjct: 909 QASSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFL 968
Query: 849 GIQIHRDRSRDILGLS--QKSYIDKVLKRFSMQNSRPLDTPIAKGDKF-SNQQCPKSELE 905
GI++ + LG+S Q+ Y +L S+P+ TP K + P ++
Sbjct: 969 GIEVAHSK----LGISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIP 1024
Query: 906 IQEMQKVPYASAVGSLMYVQVCTRPDISL 934
Y VG L+Y+ TRPDI+
Sbjct: 1025 -------AYRRLVGRLLYLN-NTRPDITF 1045
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 298 bits (764), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 243/863 (28%), Positives = 396/863 (45%), Gaps = 113/863 (13%)
Query: 107 VYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKS---GFHCSF 163
V + NG +V V G + ++ ++L+ + P+F NLISV+ L +S FH S
Sbjct: 415 VSLPNGTIVLVHYAG--TVSFNSKFYLNHV--LYSPNFLLNLISVAKLCESLTCFFHFSL 470
Query: 164 GDSIFTLSMNSKVLGTGCLNECDNLYM---------LDIDTSYHESLHVTTRGTKRKL-N 213
+ + K++G + D LY L++ +S + +V + K+
Sbjct: 471 DKCLIQDQQSLKMIGLA--KQMDGLYKFYPSSSSCNLELFSSPTKYCNVVLPSSCNKIPT 528
Query: 214 IDNSVVLWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQKRLGVIRSS 273
S LWH RLGH+SK R++ L +L Y + I +
Sbjct: 529 FVPSDTLWHFRLGHLSKQRLQTL-------SLLYPSIK------------------IDNK 563
Query: 274 NVLELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVEN 333
+ +L H A++ F S +D+SR+ ++ L+ K+E K++ ++N
Sbjct: 564 AICDLCH---------FAKHKHLPFTS--NDHSRFLWIILLKTKAEVSTHVKNFITMIKN 612
Query: 334 QLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERR 393
K +R+D G E+ + GI+ Q + TP NG ER+
Sbjct: 613 HFHTTPKFIRTDNGPEFM-------------LSTLYSSHGIIHQKSCVETPQQNGRVERK 659
Query: 394 NRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSLKHL 452
++ ++++ R+++ S LP + W A++ A +L+NR+P+ + ++PY + + P
Sbjct: 660 HQHILNVGRALLYQSKLPPAYWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLF 719
Query: 453 HVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDV 512
V+GC A + + TKL + S F+GY +G+ Y+ SR F +R TF E+
Sbjct: 720 KVFGCLCYASTLQSHTTKLKHRARKSIFIGYQSGYKGFTLYDLHSREIFISRHVTFHEN- 778
Query: 513 DFGGRNKERNIVFEEEPSKDDSVLIPF-VVSDSVQTPVAPVTIQDPIQDNAXXXXXXXXX 571
F P S + S TPVAP PI D+
Sbjct: 779 ------------FLPYPHTSSSTSPDWQYFSYFHPTPVAPNLPSPPIIDDIIAPDHPSPD 826
Query: 572 XXXXXXVQMPL--RRSTRERRS-AIPDDYI-------VFLQEHEDTVDMIDDDPVSFYHA 621
+P+ R STR + + DYI + H + + + F +
Sbjct: 827 PTPPTSPILPIVPRHSTRNVTAPSYLQDYICNNIHAFTYPITHSLSHHHLSNSRSFFVMS 886
Query: 622 MQSSDSHK----------WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDS 671
+ + K W AM E ++++ W LV LP KPIGC+WI+K K +
Sbjct: 887 LHTQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHA 946
Query: 672 QGNVERYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRTIMALVANLDLELHQMDVKTAF 731
G VERYKARLVAKG+ Q EG+DY +T+SPV+ + R ++AL + + LHQ+DV AF
Sbjct: 947 DGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAF 1006
Query: 732 LNGDIDETIFMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANT 791
L+GD+ E ++M+ P + + VCKL KS+YGLKQASR+WY K V+ + T
Sbjct: 1007 LHGDLQEDVYMMVPPG-IKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQAT 1065
Query: 792 VENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQ 851
+ ++ K + + F L++YVDDI+LA N K L F++KDLG+ + LGI+
Sbjct: 1066 SDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIE 1125
Query: 852 IHRDRSRDILGLSQKSYIDKVLKRFSMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQK 911
+ S+ + L Q+ Y +L S+P+ TP K E ++ ++
Sbjct: 1126 V--AHSKLGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFE-DVPACRR 1182
Query: 912 VPYASAVGSLMYVQVCTRPDISL 934
+ VG L+Y+ TRPDI+
Sbjct: 1183 L-----VGRLLYLNN-TRPDITF 1199
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 240/867 (27%), Positives = 381/867 (43%), Gaps = 132/867 (15%)
Query: 110 GNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHC--SFGDSI 167
G LVE HF T +F + D PSF NLIS+ F S HC SF D
Sbjct: 414 GTSVLVEYAGTIHF-----TPHFY-IEDVLYSPSFTLNLISI-FKVCSSLHCYASFHD-- 464
Query: 168 FTLSMNSKVLGTGCLNECDNLYMLDIDTSYHESLHVTTRGTKRKLNIDNSVVLWHRRLGH 227
+C ++ D+ + L RG LGH
Sbjct: 465 ---------------KKC---FLQDLHSQKMIGLGEQVRGL----------------LGH 490
Query: 228 VSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQK-RLGVIRSSNVLELIHTDICGP 286
VS R+ + + TL +C C KQ K V +S+ EL+H DI GP
Sbjct: 491 VSNKRLNHM--SHLYPTLTVDNHATCDICQFAKQKKLSFPTSVSVASSKFELLHFDIWGP 548
Query: 287 FHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDR 346
+ + + RYF++ +DDYS + ++ L+ K E K++ + Q K VRSD
Sbjct: 549 LAVTSIHNHRYFLTILDDYSIFFWIVLLKSKYEVSQHVKNFINLIHTQYHITPKVVRSDN 608
Query: 347 GGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMIS 406
G E+ F GIV + TP NG ER+++ ++++ R+++
Sbjct: 609 GPEFL-------------LNSFYASKGIVHHKSCVETPQQNGRVERKHQHILNVGRALLF 655
Query: 407 HSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCPAEARPYK 465
S LP S W AL A +++NR+ S + K+PY+L G P ++ V+G + +
Sbjct: 656 QSKLPSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQ 715
Query: 466 PNETKLDSKTISSYF----VGYS------------ERSRGYKFYN-----PTSRTFFETR 504
+ TKL ++ + F VGY SR +F+ PT+ + T
Sbjct: 716 SHRTKLSARARKTVFLGYAVGYKGYVLLDIHTREIHISRHVQFHEHILPYPTNPSTITTT 775
Query: 505 IATFFEDVDFGGRNKERNIV-----------FEEEPSKDDSVLIPF----VVSDSVQTPV 549
F D ++ + PS D+ + P V+ S +
Sbjct: 776 WDYFSSDSCSASNPLPKSSTISPIIPPPFIDVDTPPSDDNHSVSPIPQPPVIRKSSRITQ 835
Query: 550 APVTIQDPIQDNAXXXXXXXXXXXXXXXVQMPLRRS-TRERRSAIPDDYIVFLQEHEDTV 608
P +QD + VQ P+ + S+ + + L H +
Sbjct: 836 PPTHLQDYV----------CSVSDDTSFVQYPISHYLSYNNLSSSHCAFALSLDSHTE-- 883
Query: 609 DMIDDDPVSFYHAMQSSDSHKWIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTK 668
P ++ ++S W +AM E ++++ W LV LP KPI C+WI+K K
Sbjct: 884 ------PTTY---AEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIK 934
Query: 669 RDSQGNVERYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRTIMALVANLDLELHQMDVK 728
+ G++ERYKARLVAKG+ Q EG+DY +T+SPV+ + RTI+AL + +HQ+DV
Sbjct: 935 HHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVN 994
Query: 729 TAFLNGDIDETIFMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFE 788
AFL+GD+ E ++M+ P+ + + VCKL KS+YGLKQASR+WY K ++V +
Sbjct: 995 NAFLHGDLQEDVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYL 1053
Query: 789 ANTVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVL 848
+T ++ ++ K + + F L++YVDD+++ + K L E+KDLG+ + L
Sbjct: 1054 QSTSDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFL 1113
Query: 849 GIQIHRDRSRDILGLSQKSYIDKVLKRFSMQNSRPLDTPIAKGDKFSNQQCPKSELEIQE 908
G+++ S + L Q+ Y +L ++P TP K P
Sbjct: 1114 GLEV--AHSSQGISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGP-------P 1164
Query: 909 MQKVP-YASAVGSLMYVQVCTRPDISL 934
+P Y +G L+Y+ TRP I+
Sbjct: 1165 FSDIPSYRRLIGRLIYL-TNTRPYITF 1190
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 191/707 (27%), Positives = 321/707 (45%), Gaps = 96/707 (13%)
Query: 107 VYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFG-- 164
V + NG + V G+ +L L P F+ NLISVS + S CS
Sbjct: 379 VTLPNGTSIYVHYAGNVHFTP----YLHLTHVLYSPEFKVNLISVSKICDS-LSCSVNFV 433
Query: 165 --DSIFTLSMNSKVLGTGCLNECDNLYMLDID-TSYHESLHVTTRGTKRKL-----NIDN 216
+ + +++G G ++ D LY L + + LH + + K+ NI
Sbjct: 434 SNKCVIQDVTSQRMIGLG--DKSDGLYKLSMHFVNQQLQLHNSFKPLPNKVAHSACNIST 491
Query: 217 SV----------------VLWHRRLGHVSKSRIERL--VFDGILDTLDYTGLDSCIECIK 258
S LWH RLGH+S R+ + ++ I+ +D+ C
Sbjct: 492 SSLSKSSTVFYSSRIPESALWHFRLGHLSNQRLSTMSRLYPSII-------VDNKAACDI 544
Query: 259 GKQTKQKRLGVIRSSN----VLELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLI 314
+ K+L SS+ +L+H DI GP I +G +YF++ +DD++R+ ++ L+
Sbjct: 545 CHFARHKKLPFPHSSSHANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILL 604
Query: 315 HEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGI 374
K+E K++ A +ENQ K +R+D G E+ F GI
Sbjct: 605 KSKAEVPIHIKNFIALIENQFHITPKIIRTDNGSEFL-------------LHDFYASKGI 651
Query: 375 VPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAV 434
+ Q + TP NG ER+++ ++++ R+++ S LP S W A A +L+NR+P+ +
Sbjct: 652 LHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVL 711
Query: 435 A-KTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFY 493
++PY+L P + V+GC A + + TKL+++ S F+GY +G Y
Sbjct: 712 QNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKSGFKGSVLY 771
Query: 494 NPTSRTFFETRIATFFEDV-DFGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPV 552
+ +R F +R F E V + + ++ +E S + +P S + +P + +
Sbjct: 772 DLHTREIFISRHVVFHECVLPYKSNSSPQSHDWEYFTSFSTPLDLP---SGTDTSPHSAI 828
Query: 553 TIQDPIQDNAXXXXXXXXXXXXXXXVQMPLRRSTRERRSAIPDDYIV-FLQEHEDTVDMI 611
T P +P R S+R + P Y+ F+ ++ + +
Sbjct: 829 TDIVPYTSPTPTSTSSIIDIPP----PLPTRHSSRNK---TPPSYLKDFICANKSSASVN 881
Query: 612 DDDPVS---FYHAMQSSDSH---------------------KWIEAMNEEYKSMQDNQVW 647
+S YH + +S SH W +AM E ++++ W
Sbjct: 882 SLHSISNFVSYHNISNSHSHFILSLHAHTEPKSYTEANKFECWRQAMQVELTALENTGTW 941
Query: 648 DLVQLPEGKKPIGCKWIFKTKRDSQGNVERYKARLVAKGFTQKEGIDYKETFSPVSSKDS 707
++ LP KPIGC+WI+K K + G +ERYKARLVAKG+ Q EG+DY +T+SPV+ +
Sbjct: 942 KIIDLPSNAKPIGCRWIYKVKHHADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTT 1001
Query: 708 FRTIMALVANLDLELHQMDVKTAFLNGDIDETIFMVQPENFVIGDPK 754
R ++AL + + LHQ+DV AFL+GD+ E ++M P P
Sbjct: 1002 IRLVLALASLNNWHLHQLDVNNAFLHGDLQEDVYMDIPPGVSTNKPN 1048
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 213 bits (541), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 174/301 (57%), Gaps = 12/301 (3%)
Query: 634 MNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQGNVERYKARLVAKGFTQKEGI 693
M E +++ W +V LP KPIGC+WIFK K + G++ERYKARLVAKG+ Q EG+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 694 DYKETFSPVSSKDSFRTIMALVANLDLELHQMDVKTAFLNGDIDETIFMVQPENFVIGDP 753
DY +T+SPV+ + R I+AL + LHQ DV AFL+G++ E ++M+ P V
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSH 119
Query: 754 KHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANTVENCVYHKFSGSRFIFLVLYVD 813
+ VCKL KS+YGL+QAS +WY K +++S G++ + ++ K + S F L++YVD
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 814 DILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDRSRDILGLSQKSYIDKVL 873
D++LA + + K L F++KD+G+ + LG+++ +S + L Q+ Y +L
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSG--ISLCQRKYCLDLL 237
Query: 874 KRFSMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVP-YASAVGSLMYVQVCTRPDI 932
+ + S+P++TP K N P +P Y +G L+Y+ TRPDI
Sbjct: 238 EDSGLTGSKPMNTPSDPSIKLHNDSAP-------SFPDIPAYRRLIGRLLYLNT-TRPDI 289
Query: 933 S 933
+
Sbjct: 290 T 290
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 157/630 (24%), Positives = 263/630 (41%), Gaps = 117/630 (18%)
Query: 331 VENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVS 390
+ENQ K +R+D G E+ F GI+ Q + TP NG
Sbjct: 2 IENQFHVTPKIIRTDNGSEFL-------------LHEFYASKGILHQRSCVETPQQNGRV 48
Query: 391 ERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVAK-TPYELWTGRKPSL 449
ER+++ ++++ R+++ S LP S W A A +L+NRIP+ + +PY L P +
Sbjct: 49 ERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDI 108
Query: 450 KHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFF 509
V+GC A + + TKL+++ S F+GY +GY Y+ +R F +R F
Sbjct: 109 TTFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFH 168
Query: 510 EDV-DFGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVTIQDPIQDNAXXXXXX 568
E V + + +++ +E S ++IP VSD +P +
Sbjct: 169 ECVLPYKSISSSQSLDWEYFTSISSLLIIP-SVSDISHSPSTTKYVPHTQPTTTTTPTND 227
Query: 569 XXXXXXXXXVQMPLRRSTRERRS-AIPDDYIVFLQEHEDTVDMIDDDPVSFYHAMQSSDS 627
P+R S+R + S + DYI + ++ YH + + S
Sbjct: 228 PSRPP-------PIRCSSRNKISPSYLKDYICPHKSSTSVNNLYSISNYVSYHNISNPHS 280
Query: 628 H---------------------KWIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFK 666
H W +AM E ++++ W ++ P KPIGC+WI+K
Sbjct: 281 HFILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYK 340
Query: 667 TKRDSQGNVERYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRTIMALVANLDLE-LHQM 725
K ++ +ERYKARLVAKG+ Q EG+DY +T+SPV+ + R L + E L +
Sbjct: 341 IKHNADDTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIR----LASRKWYEKLASL 396
Query: 726 DVKTAFLNGDIDETIFMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSF 785
V + D ++F +K ++ Q F ++V
Sbjct: 397 LVNHGYKQASADHSLF-------------------------IKHSTTQ----FTALLV-- 425
Query: 786 GFEANTVENCVYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEAS 845
V++ + S F F+ K +LH + F++KDLG+
Sbjct: 426 -----YVDDIILAGNSLDEFTFI-------------KNILHNS-------FKIKDLGQLK 460
Query: 846 FVLGIQIHRDRSRDILGLSQKSYIDKVLKRFSMQNSRPLDTPIAKGDKFSNQQCPKSELE 905
+ LG+++ S+ + L Q+ Y +L + +S+P+ TP K + P
Sbjct: 461 YFLGLEV--AHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSPL---- 514
Query: 906 IQEMQKVP-YASAVGSLMYVQVCTRPDISL 934
+P Y VG L+Y+ TRPDI+
Sbjct: 515 ---YTDIPAYRRLVGRLLYLNA-TRPDITF 540
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/438 (27%), Positives = 199/438 (45%), Gaps = 45/438 (10%)
Query: 276 LELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQL 335
+L+H DI GP I + +G +YF++ +DD++R+ ++ L+ K+E K++ +ENQ
Sbjct: 40 FQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLWIILLKTKAEVPMHIKNFIVMIENQF 99
Query: 336 GKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNR 395
K +R+D G E+ F GI+ Q + TP NG ER+++
Sbjct: 100 HVTPKIIRTDNGSEFL-------------LHEFYASKGILHQSSCVETPQQNGRVERKHQ 146
Query: 396 TLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVAK-TPYELWTGRKPSLKHLHV 454
++++ R+++ S LP S W A A +L+NRI + + +PY L P + V
Sbjct: 147 HILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKV 206
Query: 455 WGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDV-D 513
+GC A + + TKL+++ S F+GY +GY Y+ +R F +R F E V
Sbjct: 207 FGCLCYASSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLP 266
Query: 514 FGGRNKERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVTIQDPIQDNAXXXXXXXXXXX 573
+ + +++ +E + S I VSD +P I+
Sbjct: 267 YKSISSSQSLDWEYF-TSISSPPIIPSVSDISHSP-------STIESVPHTQPTTTTTPT 318
Query: 574 XXXXVQMPLRRSTRERRS-AIPDDYIVFLQEHEDTVDMIDDDPVSFYHAMQSSDSH---- 628
P+R S+R + S + DYI + ++ YH + + SH
Sbjct: 319 NDPSPPPPIRCSSRNKISPSYLKDYICPHKSSTSVNNLYSISNYVSYHNISNPHSHFILS 378
Query: 629 -----------------KWIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDS 671
W +AM E ++++ W ++ P KPIGC+WI+K K +
Sbjct: 379 LHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHA 438
Query: 672 QGNVERYKARLVAKGFTQ 689
G +ERYKARLVAKG+ Q
Sbjct: 439 DGTIERYKARLVAKGYNQ 456
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 159 bits (402), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 199/423 (47%), Gaps = 44/423 (10%)
Query: 106 YVYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFGD 165
++ + NG++ AI F ++ L + + F+ NL+SV L C +
Sbjct: 419 HIKLPNGNM----AIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKL------CMDNN 468
Query: 166 SIFTLS---------MNSKVLGTGCLNECDNLYMLDIDTSY-----HESLHVTTRGTKRK 211
I T N K+ G G L E LY L++ + H+ + ++ +
Sbjct: 469 CIVTFDNDKCFIQDKSNLKMTGLGELIE--GLYFLNLGSQVFSQFNHQPVIALSQSSSST 526
Query: 212 LNIDNSVVLWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQK-RLGVI 270
+ LWH RLGH+S R+ R+ +D + C C + K +L +
Sbjct: 527 TFLPQEA-LWHFRLGHLSNDRLLRMQQHFPCIKVDSNSV--CDICHYSRHKKLPFKLSMN 583
Query: 271 RSSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAE 330
++S+ ELIH DI GP + +G +YFI+ +DDYSR+ ++ L KSE +++
Sbjct: 584 KASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILN 643
Query: 331 VENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVS 390
+ENQ K+K+VR+D G E+ F GI Q + TP NG
Sbjct: 644 IENQFNCKVKTVRTDNGPEFL-------------MPDFYSSKGIEHQTSCVETPQQNGRV 690
Query: 391 ERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSL 449
ER+++ ++++ R+++ S LP+ W ++ A Y++NRIP+ + K+PY L G P L
Sbjct: 691 ERKHQHILNVARALLFQSKLPKIFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDL 750
Query: 450 KHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFF 509
+ V+GC + A + TK DS+ F+GY + +G Y+ +T F +R T+
Sbjct: 751 NNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYH 810
Query: 510 EDV 512
E +
Sbjct: 811 EHI 813
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 152/296 (51%), Gaps = 17/296 (5%)
Query: 219 VLWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQK-RLGVIRSSNVLE 277
LWH RLGH+S R+ R+ +D + C C + K +L + ++S+ E
Sbjct: 463 ALWHFRLGHLSNDRLLRMQQHFPCIKVDSNSV--CDICHYSRHKKLPFKLSMNKASHCYE 520
Query: 278 LIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLGK 337
LIH DI GP + +G +YFI+ +DDYSR+ ++ L KSE +++ +ENQ
Sbjct: 521 LIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNC 580
Query: 338 KIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTL 397
K+K+VR+D G E+ F GI Q + TP NG ER+++ +
Sbjct: 581 KVKTVRTDNGPEFL-------------MPDFYSSKGIEHQTSCVETPQQNGRVERKHQHI 627
Query: 398 MDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWG 456
+++ R+++ S LP+ W ++ A Y++NRIP+ + K+PY L G P L + V+G
Sbjct: 628 LNVARALLFQSKLPKVFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFG 687
Query: 457 CPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDV 512
C + A + TK DS+ F+GY + +G Y+ +T F +R T+ E +
Sbjct: 688 CLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYHEHI 743
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 182/383 (47%), Gaps = 28/383 (7%)
Query: 107 VYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKS-GFHCSFGD 165
V + NG ++E IG +L L + + +P F NLISVS L + F
Sbjct: 426 VNLPNGSVIEACYIGQVKLSKD----LSIDNVLYLPKFAVNLISVSKLCREQNCKLEFEA 481
Query: 166 SIFTLSMNSKVLGTGCLNECDNLYMLDIDTSYHESLHVTTRGTKRKLNIDNSVVLWHRRL 225
I + + + G E LY L+ D S+ + + VLWH RL
Sbjct: 482 DICIIQEKNTLRKIGLAKEKHGLYYLETDERNKVSVSNISAQVELHQKHVPDGVLWHLRL 541
Query: 226 GHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQKRLGVIRSS----NVLELIHT 281
GH+S R+ + + + + + +C C + +QK L SS +L+H
Sbjct: 542 GHLSHDRM--ICMNKMYSYVPVSPHTACDVC---QMCRQKILPFPISSRNAKTAFDLVHF 596
Query: 282 DICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKS 341
DI GPF + +G +YF++ +DD +R+ ++ ++ KSE+ K++ + VE Q +KIK
Sbjct: 597 DIWGPFSTTSVHGHKYFLTILDDCTRHVWIVMLKNKSEASYQVKNFVSMVERQFERKIKM 656
Query: 342 VRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMV 401
+RSD G E+ F + GI+ Q + TP NG ERR++ ++++
Sbjct: 657 IRSDNGPEFM-------------LREFYDKKGIIHQRSCVYTPQQNGRVERRHQHILNIS 703
Query: 402 RSMISHSTLPESLWGEALKTAAYLLNRIPSKAV-AKTPYELWTGRKPSLKHLHVWGCPAE 460
R+++ S LP++ W A+ A YL+NRIP+K + K+ YE+ P L L V+GC +
Sbjct: 704 RALMFQSKLPKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSY 763
Query: 461 ARPYKPNETKLDSKTISSYFVGY 483
A N K D K F+G+
Sbjct: 764 ASTLPVNRYKFDPKARKCAFLGF 786
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 149/598 (24%), Positives = 244/598 (40%), Gaps = 103/598 (17%)
Query: 105 RYVYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFG 164
R V + NG V VE G R + ++L+ + PSF NLIS+ F S +C
Sbjct: 405 RPVNLPNGSSVLVEYAGTIRF--TPQFYLE--NVLYSPSFTLNLISI-FKVCSSLNC--- 456
Query: 165 DSIFTLSMNSKVLGTGCLNECDNLYMLDIDTSYHESLHVTTRGTKRKLNIDNSVVLWHRR 224
+ + N + L L + + M+ + + G + LWH R
Sbjct: 457 ---YAIFHNKQCL----LQDLHSQKMIGLGEQF---------GVYYSYS-----ALWHFR 495
Query: 225 LGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQKRLGVIRSSNV-LELIHTDI 283
LGHVS R+ + + TL +C C KQ K I +++ EL+H DI
Sbjct: 496 LGHVSPKRLIHM--SQLYPTLTVDVHATCDICHFAKQKKLPFSNSISVASIKFELLHFDI 553
Query: 284 CGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVR 343
GP I + + RYF++ +DDYSRY ++ L+ KSE K++ ++ Q K+VR
Sbjct: 554 WGPLSITSIHNHRYFLTILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVR 613
Query: 344 SDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRS 403
SD G E+ F GIV + TP NG ER+++ ++++ R+
Sbjct: 614 SDNGPEFL-------------LHSFYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRA 660
Query: 404 MISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCPAEAR 462
++ S LP S W AL A +++NR+ S + K+PY+L P+ V+G +
Sbjct: 661 LLYQSKLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVFGSLCYST 720
Query: 463 PYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDV-DFGGRNKER 521
+ TKL ++ S F+GY+ +GY + +R +R F+E + + +
Sbjct: 721 TLHSHRTKLSARARKSVFLGYTVGFKGYVLLDIHTREIHISRHVQFYEHILPYPATSSSI 780
Query: 522 NIVFE---------EEPSKDDSVLIPFVVSDSVQTPVAPVTIQDPIQDNAXXXXXXXXXX 572
+E P+ D + +P +P + + P D+
Sbjct: 781 TTAWEYFSSDTCSSSNPNSDTPITLP-------SSPPPFIDVDIPPTDHEHPISSIPSPS 833
Query: 573 XXXXXVQMPLRRSTRERRSAIP-DDYIVFLQEHEDTVDMIDDD-----PVSFYHAMQ--- 623
R+S R DY+ + T ++ D+ P+S Y++
Sbjct: 834 PPII------RKSIRNTHPPTHLQDYVC----NTSTASVLSDNSFVHHPISHYYSYNNLS 883
Query: 624 --------SSDSHK-------------WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIG 660
S DSH W +AM E ++++ W LV LP KPIG
Sbjct: 884 SSHCAFAMSLDSHTEPTTYAEASKFDCWNQAMKVELSALENTGTWRLVDLPPNVKPIG 941
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 187/410 (45%), Gaps = 60/410 (14%)
Query: 107 VYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSFG-- 164
V + NG + V G+ T Y L L P F+ NLISVS + S CS
Sbjct: 379 VTLPNGTSIYVHYAGNVHF---TPY-LHLTHVLYSPEFKVNLISVSKICDS-LSCSVNFV 433
Query: 165 --DSIFTLSMNSKVLGTGCLNECDNLYMLDID-TSYHESLHVTTRGTKRKL-----NIDN 216
+ + +++G G ++ D LY L + + LH + + K+ NI
Sbjct: 434 SNKCVIQDVTSQRMIGLG--DKSDGLYKLSMHFVNQQLQLHNSFKPLPNKVAHSACNIST 491
Query: 217 SV----------------VLWHRRLGHVSKSRIERL--VFDGILDTLDYTGLDSCIECIK 258
S LWH RLGH+S R+ + ++ I+ +D+ C
Sbjct: 492 SSLSKSSTVFYSSRIPESALWHFRLGHLSNQRLSTMSRLYPSII-------VDNKAACDI 544
Query: 259 GKQTKQKRLGVIRSSN----VLELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLI 314
+ K+L SS+ +L+H DI GP I +G +YF++ +DD++R+ ++ L+
Sbjct: 545 CHFARHKKLPFPHSSSHANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILL 604
Query: 315 HEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGI 374
K+E K++ A +ENQ K +R+D G E+ F GI
Sbjct: 605 KSKAEVPIHIKNFIALIENQFHITPKIIRTDNGSEFL-------------LHDFYASKGI 651
Query: 375 VPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAV 434
+ Q + TP NG ER+++ ++++ R+++ S LP S W A A +L+NR+P+ +
Sbjct: 652 LHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVL 711
Query: 435 A-KTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGY 483
++PY+L P + V+GC A + + TKL+++ S F+GY
Sbjct: 712 QNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKSVFLGY 761
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 142/308 (46%), Gaps = 53/308 (17%)
Query: 400 MVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSLKHLHVWGCP 458
MVRSM+ +P WG A+ TA Y+LNR P+K + K P E+W+ RKPS+ +L V+G
Sbjct: 1 MVRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSI 60
Query: 459 AEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDVDFGGRN 518
KL+ KT + VGY + Y+ + S+ TR E+ + +
Sbjct: 61 FYKHVPDSRRKKLEDKTEAMILVGY-HNTGAYRLLDLHSKKISITRDVKVLEEEYWDWNS 119
Query: 519 K-----ERNIVFEEEPSKDDSVLIPFVVSDSVQTPVAPVTIQDPIQDNAXXXXXXXXXXX 573
E+N++ E + D+ + V+S+ V P TI P ++
Sbjct: 120 NECSVYEKNVIIENKKESDELLTNEEVISEEVSYE-EPTTIARPQRNK------------ 166
Query: 574 XXXXVQMPLRRSTRERRSAIPDDYIVFLQEHEDTVD---MIDDDPVSFYHAMQSSDSHKW 630
QM LRR LQ+ + T D D + V F + + +K
Sbjct: 167 -----QM-LRR----------------LQDCQVTGDDEIGSDGELVHFAMLVDTKPLYK- 203
Query: 631 IEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQGNVERYKARLVAKGFTQK 690
KS NQ W+L++L +GKK I KW+FK K + +G + ++KARLVA+ F +K
Sbjct: 204 -------LKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKK 256
Query: 691 EGIDYKET 698
EG DY E
Sbjct: 257 EGFDYTEV 264
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 155/356 (43%), Gaps = 51/356 (14%)
Query: 142 PSFRRNLISVSFLDKS-GFHCSFGDSIFTLS--MNSKVLGTGCLNECDNLYMLDIDTSYH 198
PSF+ LISVS + +S +H F + + + K++G G N CD LY L
Sbjct: 448 PSFKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLG--NLCDGLYRLHPFAPAS 505
Query: 199 ESLHVTTRGTK-------------RKLNIDNSVVLWHRRLGHVSKSRIERLVFDGILDTL 245
H + ++ S +WH RLGH+S R+
Sbjct: 506 PQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQRL------------ 553
Query: 246 DYTGLDSCIECIKGKQTKQKRLGVIRSSNVLELIHTDICGPFHIAARNGQRYFISFIDDY 305
S + + T + I SS EL+H DI GP + + +G +YF++ +DD+
Sbjct: 554 ------SMMHSLYSSITIDNKAYSIASSK-FELLHFDIWGPLSVTSVHGHKYFLTIVDDF 606
Query: 306 SRYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPF 365
SR+ ++ L+ KSE + K++ + K +RSD G E+
Sbjct: 607 SRFLWVILLKNKSEVSNHVKNFVVLIHTHYQITPKYIRSDNGPEFL-------------I 653
Query: 366 ALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYL 425
F GI+ Q + TP NG ER+++ ++++ R+++ S LP W A+ A +L
Sbjct: 654 PEFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSKLPNFFWSYAVIHAVFL 713
Query: 426 LNRIPSKAV-AKTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYF 480
+N++P+ K+PY+L P + V+GC A +KL S+ S F
Sbjct: 714 INKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQRSKLQSRARKSIF 769
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 117/469 (24%), Positives = 192/469 (40%), Gaps = 108/469 (23%)
Query: 107 VYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLISVSFLDKSGFHCSF--- 163
V + +G +V V G+ S ++L + SFR NL+SV + +S C+F
Sbjct: 390 VTLPDGSIVTVTHAGYINF--SPQFYL--TNVLYSSSFRLNLMSVHKVCES-LSCTFQFL 444
Query: 164 -GDSIFTLSMNSKVLGTGCLNECDNLYMLDIDTSYHESLHVTTRGTKRKLNIDNSVVLWH 222
I S + K++G N+ D LY
Sbjct: 445 PNQCIIQDSTSLKMIGLA--NQQDGLY--------------------------------- 469
Query: 223 RRLGHVSKSRIERL--VFDGILDTLDYTGLDSCIECIKGKQTKQKRL----GVIRSSNVL 276
+LGH+S R+ + ++ I+ + D C KQK L +++
Sbjct: 470 -KLGHLSHQRMNMMSSLYSNIVSDNKNSVCDIC------HFAKQKHLPFSISTSHATSNF 522
Query: 277 ELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLG 336
EL+H DI GP I++ +G +YF++ +DD+SR+ ++ + KS KS+ V+ Q
Sbjct: 523 ELLHLDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFH 582
Query: 337 KKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRT 396
K +RSD G E+ F + GI+ Q + TP NG ER++
Sbjct: 583 VTPKCIRSDNGPEFL-------------ILSFYESLGILHQKSCVETPQQNGRVERKHHH 629
Query: 397 LMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAV-AKTPYELWTGRKPSLKHLHVW 455
++++ R+++ S LP S W AL A +L+NR P+ + ++PY + P +
Sbjct: 630 ILNVGRALLYQSKLPASYWSYALLHAVFLINRKPTPLLEGQSPYYALHHKFPDID----- 684
Query: 456 GCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFFEDVDFG 515
+K + KT+ F+GY +G+ + SR F +R F E
Sbjct: 685 -------TFKNQASTRARKTV---FLGYKSGYKGFILLDIHSREIFVSRHVVFHE----- 729
Query: 516 GRNKERNIVFEEEPSKDDSVL--------IPFVVSDSVQTPVAPVTIQD 556
F PS +S+ I VV+ SV TP P+ I D
Sbjct: 730 --------YFLPYPSNSESITSQWEYFSPIQAVVTKSVDTP-PPIPIID 769
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 28/148 (18%)
Query: 634 MNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQGNVERYKARLVAKGFTQKEGI 693
M E ++++ W LV LP KPIGC+WI+K K + G+++RYKARLV KG+ Q EG
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 694 DYKETFSP----------------------------VSSKDSFRTIMALVANLDLELHQM 725
DY +T+SP V+ + RT++AL + +H++
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 726 DVKTAFLNGDIDETIFMVQPENFVIGDP 753
D +AFL+GD+ E ++M+ P+ P
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGITTSKP 148
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 62/303 (20%)
Query: 217 SVVLWHRRLGHVSKSRIERL--VFDGILDTLDYTGLDSCIECIKGKQTKQKRLGVIRSSN 274
S LWH RLGH+S R+ ++ ++ I +D+ C KQ++L S++
Sbjct: 441 STALWHFRLGHLSNQRLSQMHHLYPDI-------HVDNKFICDICHFAKQRKLPYNSSTS 493
Query: 275 V----LELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAE 330
+ EL++ DI GP + +GQRYF++ +DD+SR+ + L KSE + +
Sbjct: 494 IASSNFELLYLDIWGPLAKVSIHGQRYFLTIVDDHSRFLWTILFKNKSEVPSHIQHFIYL 553
Query: 331 VENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVS 390
++N+ K +RSD G + + F GI+ Q + TP N
Sbjct: 554 IQNKHKVTPKIIRSDNGHVFL-------------LSAFYASQGIIHQRSCVETPQHN--- 597
Query: 391 ERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSL 449
+L+NR+P+ + K+PY++ P +
Sbjct: 598 --------------------------------VFLINRVPTLVLENKSPYQVLYKTLPDI 625
Query: 450 KHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFYNPTSRTFFETRIATFF 509
V+GC A + + TKL S+ S F+GY +G Y+ ++ F +R TF
Sbjct: 626 NSFKVFGCLCYASTLQSHRTKLQSRARKSVFLGYKSGYKGSFLYDLNTKEIFMSRNVTFH 685
Query: 510 EDV 512
E +
Sbjct: 686 ESI 688
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 15/179 (8%)
Query: 272 SSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEV 331
S NV+ I I GP +A+ +G RYF++ +DD++R+ ++ L+ K+E K++ +
Sbjct: 511 SCNVVS-ISNYIWGPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMI 569
Query: 332 ENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSE 391
+N K +R+D G E+ F GI+ Q + TP NG E
Sbjct: 570 QNHFHTTPKFIRTDNGPEFM-------------LPSFYASHGIIHQKSCVETPQQNGRVE 616
Query: 392 RRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAV-AKTPYELWTGRKPSL 449
R+++ ++++ R+++ S LP S W A+ A +L+NR+P+ + ++PY L + P +
Sbjct: 617 RKHQHILNVGRALLYQSKLPPSFWSYAIHHAVFLINRVPTPLLHNQSPYFLLHHKLPDI 675
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 12/135 (8%)
Query: 252 SCIECIKGKQTKQ--KRLGVIRSSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSRYG 309
SC C+ GK ++ K +R+ +VL ++H+DI GP + +G RYFI+F+D+YS+
Sbjct: 14 SCNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDEYSKML 73
Query: 310 YLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFL 369
+LYLI KS++L+VFK +K E Q G K+K + + GGEY K F +
Sbjct: 74 WLYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSK----------DFESYC 123
Query: 370 QECGIVPQYTMPGTP 384
GI+ + T P TP
Sbjct: 124 TNQGIIHEVTTPYTP 138
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 64/99 (64%)
Query: 756 LVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANTVENCVYHKFSGSRFIFLVLYVDDI 815
+V L+KS+YGLKQASR WY K +Q ++ +GF+ + ++ ++ S F+ +++YVDD+
Sbjct: 1 MVYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDL 60
Query: 816 LLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHR 854
++A N + K +L + F MKDLG + LG+++ R
Sbjct: 61 VIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELAR 99
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 383 TPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAV-AKTPYEL 441
TP NGV+ER N+TL++ R M+S+ L + W EA+ T YL+NR P ++ KT YEL
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYEL 64
Query: 442 WTGRKPSLKHLHVWGCPAEARPYKPNETKLDSK 474
W G+ +L V+GC Y NE KL+ +
Sbjct: 65 WPGKSVDYSNLRVFGCTVY---YHVNEWKLERR 94
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 294 GQRYFISFIDDYSRYGYLYLIHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGK 353
G RYF+ FIDDYS + ++Y+I + E ++ ++ ++ Q K IK R D EY
Sbjct: 3 GARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEY--- 59
Query: 354 YDGSGEQRPGPFALFLQECGIVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLP 411
R FL E G +++ P T G +ER++R ++D V +M+ ++ P
Sbjct: 60 -------RDSKLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISASCP 110
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 48/201 (23%)
Query: 314 IHEKSESLDVFKSYKAEVENQLGKKIKSVRSDRGGEYYGKYDGSGEQRPGPFALFLQECG 373
+ +S++ FK A +ENQ GKK+K ++ D G E+ F F + G
Sbjct: 1 MKHRSDASKNFKQLNALLENQFGKKVKRLQIDNGLEFCW----------SEFNEFCKTEG 50
Query: 374 IVPQYTMPGTPSMNGVSERRNRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKA 433
I + + TP N V++R N+TL++ R M+S++ L + WGE
Sbjct: 51 ISRHHMVRNTPQQNSVAKRMNQTLLERARCMLSNAGLTRTFWGE---------------- 94
Query: 434 VAKTPYELWTGRKPSLKHLHVWGCPAEARPYKPNETKLDSKTISSYFVGYSERSRGYKFY 493
TG +GC Y+ NE KL+S+ FVGY + + Y+ +
Sbjct: 95 ---------TG----------FGCTVY---YRVNEGKLESRAKKRVFVGYGDGVKEYRIW 132
Query: 494 NPTSRTFFETRIATFFEDVDF 514
+P+ +R F E V F
Sbjct: 133 SPSENRVILSRNVVFDEIVMF 153
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 693 IDYKETFSPVSSKDSFRTIMALVANLDLELHQMDVKTAFLNGDIDETIFMVQPENFVIGD 752
+D SP+ SK FR D FL+GD+ E ++M P+
Sbjct: 185 VDPPPNISPIGSKWIFRL--------------NDANNTFLHGDLQEDVYMHPPQGVSPPR 230
Query: 753 PKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANTVENCVYHKFSGSRFIFLVLYV 812
P VCKL KS+YGLKQASR+W+ K ++++ GF + ++ + S + F L++YV
Sbjct: 231 PGQ-VCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASADHSFLIRASPTSFTALLIYV 289
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 796 VYHKFSGSRFIFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRD 855
++ K + S F L++YVDDI+LA N K L F++KDLG+ +VLG+++
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEV--A 58
Query: 856 RSRDILGLSQKSYIDKVLKRFSMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVP-Y 914
S+ + L Q+ Y +L NS+P+ T K N P E +P Y
Sbjct: 59 HSKQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYE-------DIPSY 111
Query: 915 ASAVGSLMYVQVCTRPDISL 934
+G L+Y+ TRPDI+
Sbjct: 112 RRLIGRLLYLNS-TRPDITF 130
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 50/93 (53%)
Query: 634 MNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQGNVERYKARLVAKGFTQKEGI 693
M + +++ W L L + K IGCKW ++ K G +ER+K L+ K +T++EG+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 694 DYKETFSPVSSKDSFRTIMALVANLDLELHQMD 726
+ +TFS V+ ++++V L Q+D
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 657 KPIGCKWIFKTKRDSQGNVERYKARLVAKGFTQKEGIDY 695
K +GC+W++K K + G +E+YKARLVAKG+TQ EG D+
Sbjct: 12 KIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 742 MVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANTVENCVYHKFS 801
M QP FV + VCKL+KS+YGLKQA + W+ + ++ + F+ + ++
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 802 GSRFIFLVLYVDDILL 817
+ F + ++YVDDI L
Sbjct: 61 ANTFAYFLVYVDDIPL 76
>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
EGN_Mt090430 20090702
Length = 532
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 90 QRRGCLNYRKPTDGERYVYVGNGDLVEVEAIGHFRLCLSTGYFLDLIDTFVIPSFRRNLI 149
+R +Y D E VY+G+ V G L L++G L L D +P+ R NLI
Sbjct: 325 KREAFTSYISVGDDEDQVYLGDSRTTAVNGKGKVILKLTSGKTLALSDVLNVPTIRTNLI 384
Query: 150 SVSFLDKSGFHCSFGDSIFTLSMNSKVLGTG-C----------LNECDNLY 189
SV+ L+K G SF +S N+ +G G C NE D LY
Sbjct: 385 SVALLNKVGVKVSFESDKMVMSKNNVFVGNGYCDQGLFVLSSFANEPDELY 435
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 203 VTTRGTKRKLNIDNSVV--LWHRRLGHVSKSRIERLVFDGIL--DTLDYTGLDSCIECIK 258
+T G ID + LWH RLGH+S+ ++ L D +L + GL
Sbjct: 84 LTDYGVVASFEIDQEDMTKLWHMRLGHMSERGMQILAKDNLLYGHKIKDPGLSEHYAF-- 141
Query: 259 GKQTKQKRLGVI-RSSNVLELIHTDICGPFHIAARNGQRYFISFIDDYSR 307
GK+ + K L VI R+ L+ IH D P + + G +YF+S IDDYSR
Sbjct: 142 GKRHRNKFLKVIHRTKGTLDYIHDDCWEPSRVESLGGHKYFLSLIDDYSR 191
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 218 VVLWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQK-RLGVIRSSNVL 276
V LWH+RL H+ + + +L +L + L C CI K++K + +L
Sbjct: 8 VELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPTIL 67
Query: 277 ELIHTDICGPFHIAARNGQRYFISFIDDY 305
+L+H + GP G YF+SFIDD+
Sbjct: 68 DLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 218 VVLWHRRLGHVSKSRIERLVFDGILDTLDYTGLDSCIECIKGKQTKQK-RLGVIRSSNVL 276
V LWH+RL H+ + + +L +L + L C CI K++K + +L
Sbjct: 8 VELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPTIL 67
Query: 277 ELIHTDICGPFHIAARNGQRYFISFIDDY 305
+L+H + GP G YF+SFIDD+
Sbjct: 68 DLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 725 MDVKTAFLNGDIDETIFMVQPENFVIGDPKHLVCKLKKSIYGLKQASRQWYFK 777
MDV AFL+GD+ E ++M P F + LVCKL+KS Y LK A + W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSR-LVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 832 LSKHFEMKDLGEASFVLGIQIHRDRSRDILGLSQKSYIDKVLKRFSMQNSRPLDTPIAKG 891
+ + FEM DLG S+ LGI+ HR RSRD+L + Q+ Y K+LK+F ++ TP
Sbjct: 30 MMRQFEMTDLGHISYFLGIEFHR-RSRDLL-MHQRRYAIKILKKFDIEYRNHAVTPAKTI 87
Query: 892 DKFSNQQCPKSELEIQEMQKVPYASAVGSLMYVQVCTRPD 931
+ S E ++ Q Y +GS +++ V + D
Sbjct: 88 FQLSKNN---DESDVDPTQ---YGRLIGSQVFIAVTLKID 121
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 808 LVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDRSRDILGLSQKS 867
+++YV D+++ N LL + L+ F +KDLG + LGI++ + +S L ++Q
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEV-KPQSNGSLLITQSK 59
Query: 868 YIDKVLKRFSMQNSRPLDTPIAKGDKFS-NQQCPKSELEIQE--MQKVPYASAVGSLMYV 924
Y+ +L + MQ ++ L +P+ K S + P S+ + ++ + YA+ +G L V
Sbjct: 60 YVRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGPLSNV 119