Jatropha Genome Database

JcCA0009532.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009532.10 - phase: 0 
         (429 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g018480.1 Homeodomain-related chr02_pseudomolecule_IM...   330   7e-91
IMGA|Medtr7g026130.1 Homeodomain-related chr07_pseudomolecule_IM...   170   2e-42
IMGA|Medtr7g103730.1 Homeodomain-related chr07_pseudomolecule_IM...    90   2e-18
IMGA|Medtr4g154980.1 Homeodomain-related chr04_pseudomolecule_IM...    76   3e-14
IMGA|Medtr5g089330.1 Homeodomain-related chr05_pseudomolecule_IM...    74   1e-13
IMGA|Medtr5g021830.1 Homeodomain-related chr05_pseudomolecule_IM...    73   3e-13
IMGA|Medtr7g067850.1 Homeodomain-related chr07_pseudomolecule_IM...    71   1e-12
IMGA|Medtr1g024140.1 Homeodomain-related chr01_pseudomolecule_IM...    70   2e-12
IMGA|Medtr7g025190.1 Homeodomain-related chr07_pseudomolecule_IM...    64   1e-10
IMGA|Medtr4g145020.1 Homeodomain-related chr04_pseudomolecule_IM...    52   7e-07
IMGA|Medtr4g144750.1 Homeodomain-related chr04_pseudomolecule_IM...    52   7e-07

>IMGA|Medtr2g018480.1 Homeodomain-related
           chr02_pseudomolecule_IMGAG_V3 4887838-4892746 E
           EGN_Mt090430 20090702
          Length = 464

 Score =  330 bits (847), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 204/415 (49%), Positives = 239/415 (57%), Gaps = 52/415 (12%)

Query: 1   MASSNRHWPSMFKSKPCTSHHHQWQHEINSSSLVSSGCHKSPYTSVPGCEERSPEPKPRW 60
           MASSNRHWPSMFKSKPC +HH QWQH+INSS L+SS CH++PY+S  GCEERSPEPKPRW
Sbjct: 1   MASSNRHWPSMFKSKPCNTHH-QWQHDINSS-LISSACHRTPYSS--GCEERSPEPKPRW 56

Query: 61  NPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 120
           NPKPEQIRILEAIFNSGMVNPPR+EIR+IRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR
Sbjct: 57  NPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 116

Query: 121 HLQNSKQQTYQNP-------------SVXXXXXXXXXXXXXXXXXXXXXPKGSRRTLSLT 167
           HLQN  +   QN              S+                          +  SL 
Sbjct: 117 HLQNQNKNQNQNQNQNQDQPPQQNPNSLSQISATVPSSSSSSSEKSPPKELIPAKVFSLG 176

Query: 168 SPNVVDVS-NSPTGSVNQ--TYFQAHNEFMTEPXXXXXXXXXXXX--------------X 210
            PN+ DV  NSPT SVNQ  TYFQ  N     P                           
Sbjct: 177 FPNINDVVPNSPTASVNQNQTYFQTQNVTTLLPPPQVTAPTTETFFFPVQHHGQGIVLPN 236

Query: 211 XXXXXXXCFSDLSNVAQVQD-----NTVGPCTXXXXXXXXXXXXXXDHENKNIKMQPNLS 265
                  CFS+LSN+   Q      +  G CT              +   K+ +   ++ 
Sbjct: 237 NVTSQGFCFSELSNMVPAQSHGQQHHNTGNCTTSFLLSEIMNNHGVNSSKKDQEQDKSVK 296

Query: 266 YPVTAPITHTIGLSPP-------FPLNPNSVTVPS-TVNQIQGVGESSPAGSSVAARSTV 317
                P    I L P         P   +++TVPS  ++Q+QG+GE       VAA+S V
Sbjct: 297 IMHQIPPHLNICLPPATTTTTVLHPTTSSTITVPSPIISQVQGIGE-----PGVAAKSVV 351

Query: 318 FINDVAIEVGVGPFNLREAFGDDFLLIHSSGQPVLTNEWGLTLHSLQHGASYYLV 372
           FINDVA EV  GPFN+R AFGDD +L+H +GQPVLTN++G+TLHSLQHGA YYLV
Sbjct: 352 FINDVAFEVASGPFNVRAAFGDDAVLVHQTGQPVLTNQYGVTLHSLQHGALYYLV 406


>IMGA|Medtr7g026130.1 Homeodomain-related
           chr07_pseudomolecule_IMGAG_V3 6630806-6633529 H
           EGN_Mt090430 20090702
          Length = 432

 Score =  170 bits (430), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 99/132 (75%), Gaps = 12/132 (9%)

Query: 1   MASSNRHWPSMFKSKPCTSHHHQWQHEINSSSLVSSGCHKSPYTSVPGCEERSPEPKPRW 60
           M SSN+HWPSMFK    T+  +Q   +  +SSL++ G            EER+PEPKPRW
Sbjct: 1   MTSSNKHWPSMFKK--STNASNQRNSQGLNSSLLTGG----------DGEERTPEPKPRW 48

Query: 61  NPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 120
           NPKP+QIRILEAIFNSGMVNPPR+EI +IR QLQE+GQVGDANVFYWFQNRKSRSK K R
Sbjct: 49  NPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSKQKKR 108

Query: 121 HLQNSKQQTYQN 132
            + N K++T QN
Sbjct: 109 FIHNKKRETQQN 120



 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 5/86 (5%)

Query: 286 PNSVTVPSTVNQIQGVGESSPAGSSVAARSTVFINDVAIEVGVGPFNLREAFGDDFLLIH 345
           P++V  P   ++ QG G    A      +  V   D A +V  GPFN+R +FGD  +L  
Sbjct: 324 PDAVPFPIIDHRHQGFGVEDEA-----EKCMVITKDAAFKVDAGPFNVRASFGDRAVLFD 378

Query: 346 SSGQPVLTNEWGLTLHSLQHGASYYL 371
           SSG PVLT+EWG+TL SL HGA YYL
Sbjct: 379 SSGTPVLTDEWGVTLDSLHHGAEYYL 404


>IMGA|Medtr7g103730.1 Homeodomain-related
           chr07_pseudomolecule_IMGAG_V3 23346512-23350383 F
           EGN_Mt090430 20090702
          Length = 272

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 47/58 (81%)

Query: 51  ERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWF 108
           E++   + RW PKPEQI ILE+IFNSGMVNPP++E  +IR  L+++G VGDANVFYWF
Sbjct: 20  EKTEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWF 77



 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 46/66 (69%)

Query: 307 AGSSVAARSTVFINDVAIEVGVGPFNLREAFGDDFLLIHSSGQPVLTNEWGLTLHSLQHG 366
             S+V   +TVFIN +A E+  GP +++  FG+D +L+HSSG PV TNE G+ + SL HG
Sbjct: 201 GASTVTGLATVFINGIATEIQAGPLDIKTVFGEDVMLVHSSGVPVPTNEHGILIQSLHHG 260

Query: 367 ASYYLV 372
            SY+LV
Sbjct: 261 ESYFLV 266


>IMGA|Medtr4g154980.1 Homeodomain-related
           chr04_pseudomolecule_IMGAG_V3 38154459-38158037 E
           EGN_Mt090430 20090702
          Length = 358

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 59  RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
           RWNP PEQ+R LE ++  G   P  ++I++I AQL+++G++   NVFYWFQN K+R + K
Sbjct: 96  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQK 155

Query: 119 LR 120
            R
Sbjct: 156 RR 157


>IMGA|Medtr5g089330.1 Homeodomain-related
           chr05_pseudomolecule_IMGAG_V3 34708019-34707101 E
           EGN_Mt090430 20090702
          Length = 184

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 43/64 (67%)

Query: 59  RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
           RWNP  EQ+++L  +F +G+  P  D+I++I  QL  YG++   NVFYWFQN K+R + K
Sbjct: 33  RWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQK 92

Query: 119 LRHL 122
            R +
Sbjct: 93  RRKV 96


>IMGA|Medtr5g021830.1 Homeodomain-related
           chr05_pseudomolecule_IMGAG_V3 8417044-8413413 E
           EGN_Mt090430 20090702
          Length = 297

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 53  SPEPKPRWNPKPEQIRILEAIF-NSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNR 111
           S +   RW P  +QIRIL+ ++ N+G+ +P  ++I+RI A+L++YG++   NVFYWFQN 
Sbjct: 24  SRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNH 83

Query: 112 KSRSKHKLR 120
           K+R + K R
Sbjct: 84  KARERQKKR 92


>IMGA|Medtr7g067850.1 Homeodomain-related
           chr07_pseudomolecule_IMGAG_V3 13783283-13781124 E
           EGN_Mt090430 20090702
          Length = 206

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%)

Query: 53  SPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRK 112
           SP    RW+P  EQ+ ILE ++ SG+  P   +I++I   L  YG++   NVFYWFQN K
Sbjct: 2   SPPGSSRWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQNHK 61

Query: 113 SRSKHKLRHLQN 124
           +R + KLR   N
Sbjct: 62  ARDRQKLRRKLN 73


>IMGA|Medtr1g024140.1 Homeodomain-related
           chr01_pseudomolecule_IMGAG_V3 5610984-5612540 F
           EGN_Mt090430 20090702
          Length = 236

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 39/60 (65%)

Query: 59  RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
           RWNP  EQI ILE ++  GM  P   +I +I  QL +YG++   NVFYWFQN K+R + K
Sbjct: 90  RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQK 149


>IMGA|Medtr7g025190.1 Homeodomain-related
           chr07_pseudomolecule_IMGAG_V3 6124099-6123360 H
           EGN_Mt090430 20090702
          Length = 183

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 43/66 (65%)

Query: 53  SPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRK 112
           S   + RW P P Q++ LE IF +    P +++I+ I A L ++GQ+ + +V+ WFQNR+
Sbjct: 62  STRLRQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQNRR 121

Query: 113 SRSKHK 118
           +RSK K
Sbjct: 122 ARSKGK 127


>IMGA|Medtr4g145020.1 Homeodomain-related
           chr04_pseudomolecule_IMGAG_V3 36683694-36679206 E
           EGN_Mt090430 20090702
          Length = 165

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 70  LEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 120
           +E ++  G   P  ++I++I AQL++ G++   NVFYWFQN K+R + K R
Sbjct: 93  VEELYRRGTRTPSAEQIQQITAQLRKIGKIEGKNVFYWFQNHKARERQKRR 143


>IMGA|Medtr4g144750.1 Homeodomain-related
           chr04_pseudomolecule_IMGAG_V3 36530438-36525950 E
           EGN_Mt090430 20090702
          Length = 165

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 70  LEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 120
           +E ++  G   P  ++I++I AQL++ G++   NVFYWFQN K+R + K R
Sbjct: 93  VEELYRRGTRTPSAEQIQQITAQLRKIGKIEGKNVFYWFQNHKARERQKRR 143