Jatropha Genome Database

JcCA0008021.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.30 - phase: 0 
         (157 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233100_3.1 Sin3 associated polypeptide p18 AC233100.6 162...   182   8e-47

>IMGA|AC233100_3.1 Sin3 associated polypeptide p18 AC233100.6
           16242-12510 E EGN_Mt090430 20090702
          Length = 151

 Score =  182 bits (461), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 102/121 (84%), Gaps = 1/121 (0%)

Query: 38  EPIDREKTCPLLLRVFTKIGSHHKMEDFAVGGKEPKDEVQIYTWKDATLHELTDLVKEVV 97
           EP+DREKTCPLLLRVFTKIGSHH M+DF+V GKEPKDEVQIYTWKDATL ELTDLVKEV 
Sbjct: 31  EPVDREKTCPLLLRVFTKIGSHHSMDDFSVRGKEPKDEVQIYTWKDATLRELTDLVKEVA 90

Query: 98  PEARRQSARLSFAFVYPDIHGRFMLRVVGVTHS-NARRPYDAKALGELSFQIGDYLDVAI 156
           P ARR++A+LSFAFV+PD +GRF ++ VG T S    R  D KAL +L F+IGDYLDVAI
Sbjct: 91  PAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGTGRLDDGKALADLGFEIGDYLDVAI 150

Query: 157 L 157
           L
Sbjct: 151 L 151