Jatropha Genome Database

JcCA0008021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.20 + phase: 0 
         (323 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g011350.1 PGR5-like protein 1A, chloroplast precursor...   425   e-119
IMGA|Medtr2g116720.1 hypothetical protein chr02_pseudomolecule_I...    61   9e-10
IMGA|Medtr2g116720.2 hypothetical protein chr02_pseudomolecule_I...    52   6e-07

>IMGA|Medtr5g011350.1 PGR5-like protein 1A, chloroplast precursor,
           putative chr05_pseudomolecule_IMGAG_V3 3060600-3057650 E
           EGN_Mt090430 20090702
          Length = 315

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/288 (72%), Positives = 232/288 (80%), Gaps = 3/288 (1%)

Query: 39  IQFN--GRHFCVRRRIFMLPIKATAXXXX-XXXXXXXXXSKILQYCSIDRKEKRSIGEME 95
           I FN  GRH  +RR +F+L  KAT+              SKILQYCSID+KEK+S+GE+E
Sbjct: 28  IHFNAGGRHSSLRRGLFLLSPKATSDQQAGKVEEDAVVDSKILQYCSIDQKEKKSLGELE 87

Query: 96  QEFLQALQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPI 155
           Q+FLQALQ+FYYEGKA MSNEEFDNLKEELMWEGSSVVMLSS EQKFLEAS+AYVSGKP+
Sbjct: 88  QDFLQALQAFYYEGKATMSNEEFDNLKEELMWEGSSVVMLSSSEQKFLEASIAYVSGKPL 147

Query: 156 LSDQEFDELKMRLKQEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMFLLYVPATVVAXXXX 215
           +SD+EFDELK++LK EGSEIV EGPRCSLRSRKVYSDL+VDYLK  LL VPATV+A    
Sbjct: 148 MSDKEFDELKLKLKMEGSEIVAEGPRCSLRSRKVYSDLTVDYLKALLLKVPATVIALGLF 207

Query: 216 XXXXXXXXXEITYLLELPEPFSFIFTWFAAVPLIVWLAQSFTNAIVKDFLILKGPCPNCG 275
                    EI YL+ +PEPFSFI TWFAAVP I+W AQS TNAI+KDFLILKGPCPNCG
Sbjct: 208 FFLDDVTGFEINYLIAIPEPFSFILTWFAAVPFILWFAQSITNAIIKDFLILKGPCPNCG 267

Query: 276 TENLSFFGTILSVSSGGVTNMVKCSNCGTDMEYDSKTRLITLPEGSNA 323
           TEN SFFGTILS+SSG  TN VKC NCGT M YDS TRLITLPEGSNA
Sbjct: 268 TENTSFFGTILSISSGDSTNKVKCENCGTAMLYDSTTRLITLPEGSNA 315


>IMGA|Medtr2g116720.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 27286565-27289775 E
           EGN_Mt090430 20090702
          Length = 286

 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 24/194 (12%)

Query: 139 EQKFLEASMAYVSGKPILSDQEFDELKMRLKQEGSEIVVEGPRCSLRSRKVYSDLSVDYL 198
           E  + +A  AY  G+P++ D  FD ++++LK  GS+ VV+ PRCS+R +  Y+D   D  
Sbjct: 67  EALYSQARDAYYRGEPLIVDDMFDRVELKLKWYGSKSVVKYPRCSIRRQSTYADAEEDLS 126

Query: 199 KMFLLYVPATV------------------VAXXXXXXXXXXXXXEITYLLELPEPFSFIF 240
            +F L    T+                  +A             + + L  L    + +F
Sbjct: 127 MVFALASAWTLFFAFGSSAMVGPMFYSISLAYQNAFNLGLSYGSQASELSPLFMVNTILF 186

Query: 241 TWFAAV---PLIVWLAQSFTNAIVKDFLILKGPCPNCGTENLSFFGTILSVSSGGVTNMV 297
           T    V   P+     ++       D   LKG CPNCG E  +F  T  + +S    +  
Sbjct: 187 TALGFVIGYPVASASVKTLQGLWRNDLAALKGSCPNCGEEVFAFVRTDKANNS---PHRA 243

Query: 298 KCSNCGTDMEYDSK 311
           KC  C   +E+ ++
Sbjct: 244 KCHVCECLLEFRTE 257


>IMGA|Medtr2g116720.2 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 27286565-27288775 E
           EGN_Mt090430 20090702
          Length = 132

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 41/66 (62%)

Query: 139 EQKFLEASMAYVSGKPILSDQEFDELKMRLKQEGSEIVVEGPRCSLRSRKVYSDLSVDYL 198
           E  + +A  AY  G+P++ D  FD ++++LK  GS+ VV+ PRCS+R +  Y+D     +
Sbjct: 67  EALYSQARDAYYRGEPLIVDDMFDRVELKLKWYGSKSVVKYPRCSIRRQSTYADAEGRKI 126

Query: 199 KMFLLY 204
            ++ L+
Sbjct: 127 CLWFLH 132