Jatropha Genome Database

JcCA0007981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0007981.20 - phase: 0 
         (287 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g041100.1 Origin recognition complex subunit 6 chr05_...   407   e-114
IMGA|Medtr5g043720.1 Origin recognition complex subunit 6 chr05_...   404   e-113

>IMGA|Medtr5g041100.1 Origin recognition complex subunit 6
           chr05_pseudomolecule_IMGAG_V3 17590856-17596514 E
           EGN_Mt090430 20090702
          Length = 287

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/287 (67%), Positives = 227/287 (79%)

Query: 1   MDLSEIAKKLGLSESKNLIRKAAELRRLCDVQFDSSIIGVGEVSKAIICLEIAATRFQVI 60
           MD+SEIAKKL LS+SK LIRKAAELRRLCDV FDSSIIGVGEV+KAIIC+EIAAT+  V+
Sbjct: 1   MDISEIAKKLKLSDSKLLIRKAAELRRLCDVHFDSSIIGVGEVAKAIICMEIAATKLGVL 60

Query: 61  FDRQAAIRLSGLSEKAYTRSFNSLQNSLGVKTKLDIRELGIQFGCIRLIPLVKKGLSLYK 120
           FDR +A++LSG+S++ Y RS+NSL N++GVK KLD+REL IQFGC+R+IP V+ GL LYK
Sbjct: 61  FDRSSAVKLSGMSDRGYIRSYNSLHNTIGVKLKLDVRELAIQFGCVRIIPFVRDGLKLYK 120

Query: 121 ERFLASLPATRRASADFTRPVFTAVAFYLCAXXXXXXXXXXXXXEVCGTSESEFKSVSTS 180
           ERFL+SLPA RRASADFTRPVF AVAFYLCA             E+CGTSESEF SVST+
Sbjct: 121 ERFLSSLPAARRASADFTRPVFMAVAFYLCAKKHKLKVDKIKLIELCGTSESEFSSVSTT 180

Query: 181 MNDLCYDVFGISKEKKDPREVKGNRELLDVLPEKRKFEDGGYLSDDGAELSSYKKRKTAE 240
           M DLC+DVFG++KEKKDP+EVK NR+LLDVLP KRK EDGGYLSDDGAE+SSYKKRK  E
Sbjct: 181 MKDLCHDVFGVAKEKKDPKEVKTNRDLLDVLPSKRKAEDGGYLSDDGAEVSSYKKRKQME 240

Query: 241 KVAYQEWXXXXXXXXXXXXXXGPCKQTRQTRLNFFKEVPETAGLEAL 287
              Y++W               P K+ +QTRLNF KE PET  LEA+
Sbjct: 241 TKDYEKWKSSVLTSNKQDKKEVPSKKPKQTRLNFVKEAPETQKLEAM 287


>IMGA|Medtr5g043720.1 Origin recognition complex subunit 6
           chr05_pseudomolecule_IMGAG_V3 18082312-18087350 E
           EGN_Mt090430 20090702
          Length = 287

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/287 (67%), Positives = 226/287 (78%)

Query: 1   MDLSEIAKKLGLSESKNLIRKAAELRRLCDVQFDSSIIGVGEVSKAIICLEIAATRFQVI 60
           MD+SEIAKKL LS+SK LIRKAAELRRLCDV FDSSIIGVGEV+KAIIC+EIAAT+  V+
Sbjct: 1   MDISEIAKKLKLSDSKLLIRKAAELRRLCDVHFDSSIIGVGEVAKAIICMEIAATKLGVL 60

Query: 61  FDRQAAIRLSGLSEKAYTRSFNSLQNSLGVKTKLDIRELGIQFGCIRLIPLVKKGLSLYK 120
           FDR +A++LSG+S++ Y RS+NSL N++GVK KLD+REL IQFGC+R+IP V+ GL LYK
Sbjct: 61  FDRSSAVKLSGMSDRGYIRSYNSLHNTIGVKLKLDVRELAIQFGCVRIIPFVRDGLKLYK 120

Query: 121 ERFLASLPATRRASADFTRPVFTAVAFYLCAXXXXXXXXXXXXXEVCGTSESEFKSVSTS 180
           ERFL+SLPA RRASADFTRPVF AVAFYLCA             E+CGTSESEF SVST+
Sbjct: 121 ERFLSSLPAARRASADFTRPVFMAVAFYLCAKKHKLKVDKIKLIELCGTSESEFSSVSTT 180

Query: 181 MNDLCYDVFGISKEKKDPREVKGNRELLDVLPEKRKFEDGGYLSDDGAELSSYKKRKTAE 240
           M DLC+DVFG++KEKKDP+EVK NR+LLDVLP KRK EDGGYLSDDG E+SSYKKRK  E
Sbjct: 181 MKDLCHDVFGVAKEKKDPKEVKTNRDLLDVLPSKRKAEDGGYLSDDGEEVSSYKKRKQME 240

Query: 241 KVAYQEWXXXXXXXXXXXXXXGPCKQTRQTRLNFFKEVPETAGLEAL 287
              Y++W               P K+ +QTRLNF KE PET  LEA+
Sbjct: 241 TKDYEKWKSSVLTSNKQDKKEVPSKKPKQTRLNFVKEAPETQKLEAM 287