Jatropha Genome Database

JcCA0006671.80
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.80 + phase: 0 
         (134 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g009100.1 Haem peroxidase, plant/fungal/bacterial chr...    54   2e-08

>IMGA|Medtr4g009100.1 Haem peroxidase, plant/fungal/bacterial
           chr04_pseudomolecule_IMGAG_V3 1378271-1380972 E
           EGN_Mt090430 20090702
          Length = 375

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 29/54 (53%)

Query: 74  LEYDFYRDSCPQXXXXXXXXXXXXCKTQSNVAPALLRLAFHDCFIEVMNHCFFF 127
           LEYDFYRDSCP              KT   + PAL+RL FHDCFI+  +   F 
Sbjct: 77  LEYDFYRDSCPHAEHIVRSTLHLLYKTNPALVPALIRLVFHDCFIQGCDASIFL 130