Jatropha Genome Database

JcCA0006671.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.40 - phase: 0 
         (206 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g123130.1 hypothetical protein chr02_pseudomolecule_I...   156   8e-39
IMGA|Medtr4g008880.1 hypothetical protein chr04_pseudomolecule_I...   116   6e-27

>IMGA|Medtr2g123130.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 29729383-29730705 H
           EGN_Mt090430 20090702
          Length = 170

 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 101/134 (75%), Gaps = 1/134 (0%)

Query: 65  VYLLWPSDPNLRIVRLSLNKIHIHTLPIINIDVSLYVTIKVRNVDVYSMDLRRLDVALAY 124
           +Y+ +PSDP L+IVRL L KI +H +P I +D+S+  T++V+NVDVYSMD   +DVA++Y
Sbjct: 1   MYIFYPSDPYLKIVRLKLKKIKVHRVPHITVDISMLFTLRVQNVDVYSMDFGAVDVAVSY 60

Query: 125 RGKRLGHVKVKGKGHVSALGSSYVDTELEFSGVRILSDVVFLLEDLAKGRVPFDTVIKVS 184
           RGK LGHV  K  GHV A+GSS+VD + EFSG+ +L ++V LLEDLAKG VPFDTV +V 
Sbjct: 61  RGKPLGHVTSK-NGHVRAMGSSFVDADAEFSGIGVLPEIVLLLEDLAKGMVPFDTVSQVR 119

Query: 185 GELGFLGLEFPFKV 198
           G++G L   FP K 
Sbjct: 120 GKMGILFFYFPIKA 133


>IMGA|Medtr4g008880.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 1241076-1242581 E
           EGN_Mt090430 20090702
          Length = 197

 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 98/174 (56%), Gaps = 14/174 (8%)

Query: 27  QHDQNYIVLPFHHHPTTFRGPSKPMIITIICLLFIPALVYLLWPSDPNLRIVRLSLNKIH 86
           Q+ QNY+V+P               ++ I+ L      ++ LWP +P + +  L + +  
Sbjct: 6   QNTQNYLVIP----------RCCVFLLWIVVLALCITALFFLWPLNPEIEMESLIVKRAK 55

Query: 87  IHTLPIINIDVSLYVTIKVRNVDVYSMDLRRLDVALAYRGKRLGHVKVKGKGHVSALGSS 146
           +H LP +++DVSL VT+K+ N  +Y M+L  +DV + YRG +LGHV+ +G  HV   GS 
Sbjct: 56  VHPLPPLSVDVSLSVTVKIHNKVLYWMELAEVDVGIKYRGHKLGHVETRG-WHVKGWGSE 114

Query: 147 YVDTELEFSGVRILSDVVFLLEDLAKGRVPFDTVIKVSGELGFLGLEFP--FKV 198
           +V  ELEF G+    DV  L++DLAK RV F T + V G LG     FP  FKV
Sbjct: 115 HVFGELEFGGLPS-PDVAHLMQDLAKKRVHFHTAVGVVGNLGLFAFHFPKIFKV 167