Jatropha Genome Database

JcCA0006671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.20 - phase: 0 
         (236 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g038310.1 Pectinesterase inhibitor chr02_pseudomolecu...    51   5e-07

>IMGA|Medtr2g038310.1 Pectinesterase inhibitor
           chr02_pseudomolecule_IMGAG_V3 10708022-10708876 H
           EGN_Mt090430 20090702
          Length = 284

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 65  VTSPNSPSLTVKVDP-KIKRICAATESPEKCISLITPYLEGSVN--PVSTLKAIIKMLQV 121
           +T P  P  ++K     I +IC  T+ P+ C++ I P +  ++N   +  L A IK+  +
Sbjct: 121 MTMPQHPFESIKQSTLGIDQICMHTDYPDICLATIQPLISINLNFELIDVLGAAIKVCTL 180

Query: 122 TVEDT-SKIAKDVRADVSTSSAIKGALDANLDLYDRAIDNLAEASSAFSAGDFPKVKDML 180
            V+ T SK+A     +   +SA+    +     Y+ A+DNL +A+ A ++ D   +  ML
Sbjct: 181 QVKLTISKVAAHAAKNPEVASAVADCKEQ----YNSALDNLQKAADAIASRDLGTITVML 236

Query: 181 GAAISNLGYCNDAF 194
            A ++++  C  AF
Sbjct: 237 SAVMADVSTCESAF 250